Multiple platform build/check report for BioC 3.9

Results for malbec2

This page was generated on 2019-04-09 13:39:49 -0400 (Tue, 09 Apr 2019).

Package propagation status is indicated by one of the following LEDs
	YES: Package was propagated because it didn't previously exist or version was bumped
	NO: Package was not propagated because of a problem (impossible dependencies, or version lower than what is already propagated)
	UNNEEDED: Package was not propagated because it is already in the repository with this version. A version bump is required in order to propagate it

A ~~crossed-out~~ package name indicates the package is deprecated

SUMMARY

OS / Arch

INSTALL

BUILD

CHECK

BUILD BIN

[malbec2]

Linux (Ubuntu 18.04.2 LTS) / x86_64

1683

1632

219

1366

tokay2

Windows Server 2012 R2 Standard / x64

1654

1580

338

1170

1577

celaya2

OS X 10.11.6 El Capitan / x86_64

1675

1619

238

1335

1619

merida2

OS X 10.11.6 El Capitan / x86_64

1681

1631

238

1355

1631

a4 1.31.0

Tobias Verbeke

a4Base 1.31.0

Tobias Verbeke

a4Classif 1.31.0

Tobias Verbeke

a4Core 1.31.0

Tobias Verbeke

a4Preproc 1.31.0

Tobias Verbeke

a4Reporting 1.31.0

Tobias Verbeke , Willem Ligtenberg

ABAEnrichment 1.13.1

Steffi Grote

ABarray 1.51.0

Yongming Andrew Sun

abseqR 1.1.0

JiaHong Fong

ABSSeq 1.37.0

Wentao Yang

acde 1.13.0

Juan Pablo Acosta

ACE 1.1.1

Jos B Poell

aCGH 1.61.0

Peter Dimitrov

ACME 2.39.0

Sean Davis

WARNINGS

ADaCGH2 2.23.0

Ramon Diaz-Uriarte

ADAM 0.99.66

Jose Luiz Rybarczyk Filho

adaptest 1.3.0

Weixin Cai

adductomicsR 0.99.79

Josie Hayes

ERROR

skipped

adSplit 1.53.0

Claudio Lottaz

WARNINGS

AffiXcan 1.1.3

Alessandro Lussana

affxparser 1.55.0

Kasper Daniel Hansen

WARNINGS

affy 1.61.0

Rafael A. Irizarry

WARNINGS

affycomp 1.59.0

Rafael A. Irizarry

AffyCompatible 1.43.0

Martin Morgan

affyContam 1.41.0

V. Carey

affycoretools 1.55.0

James W. MacDonald

AffyExpress 1.49.0

Xuejun Arthur Li

affyILM 1.35.0

Myriam Kroll and Fabrice Berger

affyio 1.53.0

Ben Bolstad

affylmGUI 1.57.0

Gordon Smyth

affyPara 1.43.0

Markus Schmidberger

affypdnn 1.57.0

Laurent Gautier

affyPLM 1.59.0

Ben Bolstad

affyQCReport 1.61.0

Craig Parman

AffyRNADegradation 1.29.0

Mario Fasold

AGDEX 1.31.0

Cuilan lani Gao

agilp 3.15.0

Benny Chain

AgiMicroRna 2.33.0

Pedro Lopez-Romero

AIMS 1.15.1

Eric R Paquet

ALDEx2 1.15.4

Greg Gloor

alevinQC 0.99.4

Charlotte Soneson

AllelicImbalance 1.21.2

Jesper R Gadin

alpine 1.9.0

Michael Love

alsace 1.19.0

Ron Wehrens

altcdfenvs 2.45.1

Laurent Gautier

AMARETTO 0.99.20

Olivier Gevaert

AMOUNTAIN 1.9.0

Dong Li

amplican 1.5.6

Eivind Valen

AnalysisPageServer 1.17.0

Brad Friedman

anamiR 1.11.0

Ti-Tai Wang

Anaquin 2.7.1

Ted Wong

AneuFinder 1.11.2

Aaron Taudt

ANF 1.5.0

Tianle Ma

annaffy 1.55.0

Colin A. Smith

annmap 1.25.0

Chris Wirth

WARNINGS

annotate 1.61.1

Bioconductor Package Maintainer

AnnotationDbi 1.45.1

Bioconductor Package Maintainer

AnnotationFilter 1.7.0

Bioconductor Package Maintainer

AnnotationForge 1.25.0

Bioconductor Package Maintainer

AnnotationFuncs 1.33.0

Stefan McKinnon Edwards

AnnotationHub 2.15.12

Bioconductor Package Maintainer

WARNINGS

AnnotationHubData 1.13.10

Bioconductor Package Maintainer

annotationTools 1.57.0

Alexandre Kuhn

annotatr 1.9.0

Raymond G. Cavalcante

anota 1.31.0

Ola Larsson

anota2seq 1.5.3

Christian Oertlin , Julie Lorent

antiProfiles 1.23.0

Hector Corrada Bravo

apComplex 2.49.1

Denise Scholtens

apeglm 1.5.4

Anqi Zhu

appreci8R 1.1.0

Sarah Sandmann

ERROR

skipped

aroma.light 3.13.0

Henrik Bengtsson

ArrayExpress 1.43.0

Suhaib Mohammed

ArrayExpressHTS 1.33.1

Angela Goncalves , Andrew Tikhonov

ERROR

skipped

arrayMvout 1.41.0

V. Carey

arrayQuality 1.61.0

Agnes Paquet

WARNINGS

arrayQualityMetrics 3.39.1

Mike Smith

ArrayTools 1.43.0

Arthur Li

ArrayTV 1.21.0

Eitan Halper-Stromberg

ARRmNormalization 1.23.0

Jean-Philippe Fortin

artMS 1.1.12

David Jimenez-Morales

ASAFE 1.9.0

Qian Zhang

ASEB 1.27.0

Likun Wang

ASGSCA 1.17.0

Hela Romdhani

ASICS 1.3.0

Gaëlle Lefort

ASpli 1.9.1

Estefania Mancini

AssessORF 1.1.6

Deepank Korandla

ASSET 2.1.0

Samsiddhi Bhattacharjee

WARNINGS

ASSIGN 1.19.1

Ying Shen , W. Evan Johnson

ATACseqQC 1.7.8

Jianhong Ou

atSNP 0.99.21

Sunyoung Shin

ERROR

skipped

attract 1.35.1

Samuel Zimmerman

AUCell 1.5.5

Sara Aibar

BaalChIP 1.9.1

Ines de Santiago

WARNINGS

BAC 1.43.0

Raphael Gottardo

bacon 1.11.1

Maarten van Iterson

BADER 1.21.1

Andreas Neudecker

BadRegionFinder 1.11.0

Sarah Sandmann

BAGS 2.23.0

Alejandro Quiroz-Zarate

ballgown 2.15.1

Jack Fu

bamsignals 1.15.0

Alessandro Mammana

banocc 1.7.1

George Weingart

basecallQC 1.7.0

Thomas Carroll

BaseSpaceR 1.27.0

Jared O'Connell

Basic4Cseq 1.19.1

Carolin Walter

BASiCS 1.5.26

Catalina Vallejos

BasicSTARRseq 1.11.0

Annika Buerger

batchelor 0.99.7

Aaron Lun

BatchQC 1.11.3

Solaiappan Manimaran

BayesKnockdown 1.9.0

William Chad Young

BayesPeak 1.35.0

Jonathan Cairns

bayNorm 1.1.7

Wenhao Tang

baySeq 2.17.0

Thomas J. Hardcastle

BBCAnalyzer 1.13.0

Sarah Sandmann

BCRANK 1.45.0

Adam Ameur

bcSeq 1.5.1

Jiaxing Lin

ERROR

skipped

BDMMAcorrect 1.1.1

ZHENWEI DAI

beachmat 1.99.8

Aaron Lun

beadarray 2.33.2

Mark Dunning

beadarraySNP 1.49.0

Jan Oosting

BeadDataPackR 1.35.0

Mike Smith

BEARscc 1.3.1

Benjamin Schuster-Boeckler

WARNINGS

BEAT 1.21.1

Kemal Akman

BEclear 1.99.2

David Rasp

ERROR

skipped

bgafun 1.45.0

Iain Wallace

BgeeDB 2.9.0

Julien Wollbrett , Julien Roux , Andrea Komljenovic , Frederic Bastian

BGmix 1.43.0

Alex Lewin

WARNINGS

bgx 1.49.4

Ernest Turro

ERROR

skipped

BHC 1.35.0

Rich Savage

BicARE 1.41.0

Pierre Gestraud

BiFET 1.3.1

Ahrim Youn

BiGGR 1.19.0

Anand K. Gavai

ERROR

skipped

bigmelon 1.9.0

Tyler J. Gorrie-Stone

bigmemoryExtras 1.31.0

Peter M. Haverty

WARNINGS

bigPint 0.99.8

Lindsay Rutter

bioassayR 1.21.1

Tyler Backman

Biobase 2.43.1

Bioconductor Package Maintainer

WARNINGS

biobroom 1.15.0

John D. Storey and Andrew J. Bass

bioCancer 1.11.0

Karim Mezhoud

BiocCaseStudies 1.45.0

Bioconductor Package Maintainer

BiocCheck 1.19.33

Bioconductor Package Maintainer

BiocFileCache 1.7.7

Lori Shepherd

ERROR

BiocGenerics 0.29.2

Bioconductor Package Maintainer

WARNINGS

biocGraph 1.45.0

Florian Hahne

BiocNeighbors 1.1.12

Aaron Lun

BiocOncoTK 1.3.6

VJ Carey

BioCor 1.7.0

Lluís Revilla Sancho

BiocParallel 1.17.18

Bioconductor Package Maintainer

BiocPkgTools 1.1.8

Sean Davis

BiocSingular 0.99.14

Aaron Lun

BiocSklearn 1.5.2

VJ Carey

BiocStyle 2.11.0

Bioconductor Package Maintainer

BiocVersion 3.9.0

Bioconductor Package Maintainer

WARNINGS

biocViews 1.51.15

Bioconductor Package Maintainer

WARNINGS

BiocWorkflowTools 1.9.3

Mike Smith

WARNINGS

bioDist 1.55.0

Bioconductor Package Maintainer

biomaRt 2.39.2

Mike Smith

ERROR

biomformat 1.11.1

Paul J. McMurdie

BioMM 0.99.11

Junfang Chen

BioMVCClass 1.51.0

Elizabeth Whalen

biomvRCNS 1.23.0

Yang Du

BioNet 1.43.0

Marcus Dittrich

BioNetStat 1.3.2

Vinicius Jardim

BioQC 1.11.1

Jitao David Zhang

WARNINGS

BioSeqClass 1.41.0

Li Hong

biosigner 1.11.26

Philippe Rinaudo , Etienne Thevenot

Biostrings 2.51.5

H. Pagès

WARNINGS

biosvd 2.19.0

Anneleen Daemen , Matthew Brauer

biotmle 1.7.2

Nima Hejazi

biovizBase 1.31.1

Michael Lawrence

WARNINGS

BiRewire 3.15.0

Andrea Gobbi

WARNINGS

birta 1.27.0

Benedikt Zacher

birte 1.19.0

Holger Froehlich

ERROR

skipped

BiSeq 1.23.0

Katja Hebestreit

BitSeq 1.27.2

Antti Honkela , Panagiotis Papastamoulis

WARNINGS

blima 1.17.0

Vojtěch Kulvait

WARNINGS

BLMA 1.7.0

Tin Nguyen

bnbc 1.5.0

Kipper Fletez-Brant

BPRMeth 1.9.4

Chantriolnt-Andreas Kapourani

BRAIN 1.29.1

Piotr Dittwald

WARNINGS

brainImageR 1.1.1

Sara B Linker

ERROR

skipped

BrainStars 1.27.0

Itoshi NIKAIDO

branchpointer 1.9.0

Beth Signal

breakpointR 1.1.2

David Porubsky

bridge 1.47.0

Raphael Gottardo

WARNINGS

BridgeDbR 1.17.5

Egon Willighagen

BrowserViz 2.5.13

Paul Shannon

BSgenome 1.51.0

H. Pagès

WARNINGS

bsseq 1.19.3

Kasper Daniel Hansen

ERROR

BubbleTree 2.13.3

Todd Creasy , Wei Zhu

BufferedMatrix 1.47.0

Ben Bolstad

BufferedMatrixMethods 1.47.0

Ben Bolstad

BUMHMM 1.7.1

Alina Selega

bumphunter 1.25.4

Rafael A. Irizarry

BUS 1.39.0

Yuanhua Liu

BUScorrect 1.1.0

Xiangyu Luo

CAFE 1.19.0

Sander Bollen

WARNINGS

CAGEfightR 1.3.0

Malte Thodberg

CAGEr 1.25.1

Vanja Haberle , Charles Plessy

CALIB 1.49.0

Hui Zhao

WARNINGS

CAMERA 1.39.2

Steffen Neumann

CAMTHC 1.1.3

Lulu Chen

canceR 1.17.1

Karim Mezhoud

WARNINGS

cancerclass 1.27.0

Daniel Kosztyla

CancerInSilico 2.3.1

Thomas D. Sherman

WARNINGS

CancerMutationAnalysis 1.25.0

Simina M. Boca

CancerSubtypes 1.9.0

Taosheng Xu

CAnD 1.15.0

Caitlin McHugh

caOmicsV 1.13.1

Henry Zhang

Cardinal 2.1.6

Kylie A. Bemis

ERROR

skipped

casper 2.17.1

David Rossell

WARNINGS

CATALYST 1.7.7

Helena L. Crowell

ERROR

Category 2.49.1

Bioconductor Package Maintainer

categoryCompare 1.27.0

Robert M. Flight

CausalR 1.15.1

Glyn Bradley , Steven Barrett

cbaf 1.5.3

Arman Shahrisa

ccfindR 1.3.0

Jun Woo

ccmap 1.9.0

Alex Pickering

CCPROMISE 1.9.0

Xueyuan Cao

WARNINGS

ccrepe 1.19.1

Emma Schwager ,Craig Bielski, George Weingart

celaref 1.1.5

Sarah Williams

cellbaseR 1.7.2

Mohammed OE Abdallah

CellBench 0.99.10

Shian Su

cellGrowth 1.27.1

Julien Gagneur

cellHTS2 2.47.1

Joseph Barry

WARNINGS

cellity 1.11.1

Tomislav Ilicic

CellMapper 1.9.0

Brad Nelms

WARNINGS

CellNOptR 1.29.0

A.Gabor

WARNINGS

cellscape 1.7.0

Maia Smith

WARNINGS

CellScore 1.3.0

Nancy Mah

CellTrails 1.1.1

Daniel Ellwanger

cellTree 1.13.1

David duVerle

CEMiTool 1.7.7

Helder Nakaya

CexoR 1.21.0

Pedro Madrigal

CFAssay 1.17.1

Herbert Braselmann

CGEN 3.19.1

William Wheeler

CGHbase 1.43.0

Mark van de Wiel

CGHcall 2.45.0

Mark van de Wiel

cghMCR 1.41.0

J. Zhang

WARNINGS

CGHnormaliter 1.37.0

Bart P.P. van Houte

CGHregions 1.41.0

Sjoerd Vosse

ChAMP 2.13.5

Yuan Tian

WARNINGS

CHARGE 1.3.0

Benjamin Mayne

charm 2.29.0

Peter Murakami

ERROR

skipped

ChemmineOB 1.21.0

Thomas Girke

ChemmineR 3.35.6

Thomas Girke

CHETAH 0.99.4

Jurrian de Kanter

ChIC 1.3.33

Carmen Maria Livi

Chicago 1.11.1

Mikhail Spivakov

chimera 1.25.0

Raffaele A Calogero

chimeraviz 1.9.5

Stian Lågstad

ChIPanalyser 1.4.1

Patrick C.N. Martin

ChIPComp 1.13.0

Li Chen

chipenrich 2.7.1

Raymond G. Cavalcante

ChIPexoQual 1.7.0

Rene Welch

ChIPpeakAnno 3.17.2

Lihua Julie Zhu

ChIPQC 1.19.2

Tom Carroll , Rory Stark

WARNINGS

ChIPseeker 1.19.1

Guangchuang Yu

chipseq 1.33.3

Bioconductor Package Maintainer

WARNINGS

ChIPseqR 1.37.0

Peter Humburg

WARNINGS

ChIPSeqSpike 1.3.1

Nicolas Descostes

ChIPsim 1.37.0

Peter Humburg

ChIPXpress 1.27.0

George Wu

chopsticks 1.49.0

Hin-Tak Leung

WARNINGS

chroGPS 2.1.1

Oscar Reina

chromDraw 2.13.0

Jan Janecka

WARNINGS

ChromHeatMap 1.37.0

Tim F. Rayner

chromPlot 1.11.0

Karen Y. Orostica

chromstaR 1.9.2

Aaron Taudt

chromswitch 1.5.1

Selin Jessa

chromVAR 1.5.0

Alicia Schep

CHRONOS 1.11.1

Panos Balomenos

cicero 1.1.4

Hannah Pliner

ERROR

CINdex 1.11.0

Yuriy Gusev

cisPath 1.23.0

Likun Wang

ClassifyR 2.3.6

Dario Strbenac

cleanUpdTSeq 1.21.0

Sarah Sheppard ; Jianhong Ou

ERROR

skipped

cleaver 1.21.4

Sebastian Gibb

clippda 1.33.0

Stephen Nyangoma

WARNINGS

clipper 1.23.0

Paolo Martini

ERROR

Clomial 1.19.2

Habil Zare

Clonality 1.31.0

Irina Ostrovnaya

clonotypeR 1.21.0

Charles Plessy

clst 1.31.0

Noah Hoffman

WARNINGS

clstutils 1.31.0

Noah Hoffman

WARNINGS

CluMSID 0.99.13

Tobias Depke

clustComp 1.11.0

Aurora Torrente

clusterExperiment 2.3.1

Elizabeth Purdom

ERROR

ClusterJudge 1.5.0

Adrian Pasculescu

clusterProfiler 3.11.1

Guangchuang Yu

clusterSeq 1.7.0

Thomas J. Hardcastle

ClusterSignificance 1.11.0

Jason T Serviss

clusterStab 1.55.0

James W. MacDonald

CMA 1.41.0

Christoph Bernau

ERROR

cn.farms 1.31.0

Andreas Mitterecker

cn.mops 1.29.0

Guenter Klambauer

CNAnorm 1.29.0

Stefano Berri

CNEr 1.19.1

Ge Tan

CNORdt 1.25.1

A. MacNamara

CNORfeeder 1.23.1

F.Eduati

CNORfuzzy 1.25.0

T. Cokelaer

CNORode 1.25.1

David Henriques

CNPBayes 1.13.5

Jacob Carey

ERROR

skipped

CNTools 1.39.0

J. Zhang

cnvGSA 1.27.0

Joseph Lugo

CNVPanelizer 1.15.0

Thomas Wolf

ERROR

CNVRanger 0.99.26

Ludwig Geistlinger

CNVrd2 1.21.0

Hoang Tan Nguyen

CNVtools 1.77.0

Chris Barnes

cobindR 1.21.0

Manuela Benary

WARNINGS

CoCiteStats 1.55.0

Bioconductor Package Maintainer

COCOA 1.1.2

John Lawson

codelink 1.51.0

Diego Diez

CODEX 1.15.1

Yuchao Jiang

coexnet 1.5.1

Juan David Henao

CoGAPS 3.3.40

Elana J. Fertig

cogena 1.17.0

Zhilong Jia

WARNINGS

coGPS 1.27.0

Yingying Wei

COHCAP 1.29.3

Charles Warden

cola 0.99.14

Zuguang Gu

WARNINGS

coMET 1.15.2

Tiphaine Martin

compartmap 1.1.1

Benjamin Johnson

WARNINGS

COMPASS 1.21.7

Greg Finak

compcodeR 1.19.3

Charlotte Soneson

compEpiTools 1.17.0

Kamal Kishore

CompGO 1.19.0

Ashley J. Waardenberg

ComplexHeatmap 1.99.7

Zuguang Gu

condcomp 1.1.1

Diogo P. P. Branco

CONFESS 1.11.2

Diana LOW

WARNINGS

consensus 1.1.2

Tim Peters

ConsensusClusterPlus 1.47.0

Matt Wilkerson

consensusDE 1.1.4

Ashley J. Waardenberg

consensusOV 1.5.1

Benjamin Haibe-Kains

consensusSeekeR 1.11.0

Astrid Deschenes

contiBAIT 1.11.1

Kieran O'Neill

conumee 1.17.0

Volker Hovestadt

convert 1.59.0

Yee Hwa (Jean) Yang

copa 1.51.0

James W. MacDonald

copynumber 1.23.0

Gro Nilsen

CopywriteR 2.15.2

Oscar Krijgsman

coRdon 1.1.3

Anamaria Elek

CoRegFlux 0.99.22

Pauline Trébulle and Mohamed Elati

CoRegNet 1.21.0

Remy Nicolle

WARNINGS

Cormotif 1.29.0

Yingying Wei

CorMut 1.25.0

Zhenpeng Li

CORREP 1.49.0

Dongxiao Zhu

coseq 1.7.2

Andrea Rau

ERROR

skipped

cosmiq 1.17.1

David Fischer , Christian Panse

COSNet 1.17.0

Marco Frasca

CountClust 1.11.1

Kushal Dey

countsimQC 1.1.2

Charlotte Soneson

covEB 1.9.1

C. Pacini

CoverageView 1.21.1

Ernesto Lowy

covRNA 1.9.0

Lara Urban

cpvSNP 1.15.0

Caitlin McHugh

cqn 1.29.1

Kasper Daniel Hansen

CRImage 1.31.0

Henrik Failmezger , Yinyin Yuan

CRISPRseek 1.23.4

Lihua Julie Zhu

crisprseekplus 1.9.0

Alper Kucukural

CrispRVariants 1.11.1

Helen Lindsay

WARNINGS

crlmm 1.41.0

Benilton S Carvalho

crossmeta 1.9.0

Alex Pickering

WARNINGS

CSAR 1.35.0

Jose M Muino

csaw 1.17.8

Aaron Lun

CSSP 1.21.0

Chandler Zuo

ctc 1.57.0

Antoine Lucas

CTDquerier 1.3.0

Carles Hernandez-Ferrer

TIMEOUT

cTRAP 1.1.3

Nuno Saraiva-Agostinho

ERROR

skipped

ctsGE 1.9.1

Michal Sharabi-Schwager

cummeRbund 2.25.0

Loyal A. Goff

customProDB 1.23.1

Xiaojing Wang

CVE 1.9.0

Andreas Mock

WARNINGS

cycle 1.37.0

Matthias Futschik

cydar 1.7.3

Aaron Lun

CytoDx 1.3.1

Zicheng Hu

cytofast 0.99.14

K.A. Stam

cytolib 1.5.2

Mike Jiang

CytoML 1.9.6

Mike Jiang

dada2 1.11.3

Benjamin Callahan

dagLogo 1.21.1

Jianhong Ou

ERROR

skipped

daMA 1.55.0

Jobst Landgrebe

DaMiRseq 1.7.3

Mattia Chiesa

DAPAR 1.15.12

Samuel Wieczorek

DART 1.31.0

Charles Shijie Zheng

DBChIP 1.27.0

Kun Liang

dcGSA 1.11.1

Jiehuan sun

WARNINGS

DChIPRep 1.13.0

Bernd Klaus

ddCt 1.39.0

Jitao David Zhang

ddPCRclust 1.3.0

Benedikt G. Brink

debrowser 1.11.9

Alper Kucukural

DECIPHER 2.11.2

Erik Wright

deco 0.99.56

Francisco Jose Campos Laborie

DEComplexDisease 1.3.0

Guofeng Meng

decompTumor2Sig 1.99.1

Rosario M. Piro

DeconRNASeq 1.25.0

Ting Gong

decontam 1.3.1

Benjamin Callahan

DEDS 1.57.0

Yuanyuan Xiao

DeepBlueR 1.9.0

Felipe Albrecht , Markus List

ERROR

skipped

deepSNV 1.29.1

Moritz Gerstung

DEFormats 1.11.1

Andrzej Oleś

DEGraph 1.35.0

Laurent Jacob

DEGreport 1.19.1

Lorena Pantano

DEGseq 1.37.1

Likun Wang

DelayedArray 0.9.9

Hervé Pagès

WARNINGS

DelayedDataFrame 0.99.9

Qian Liu

ERROR

DelayedMatrixStats 1.5.2

Peter Hickey

deltaGseg 1.23.0

Diana Low

DeMAND 1.13.0

Jung Hoon Woo , Mariano Alvarez

DeMixT 0.99.9

Zeya Wang , Fan Gao

DEP 1.5.3

Arne Smits

DepecheR 0.99.31

Jakob Theorell

DEqMS 1.1.7

Yafeng Zhu

derfinder 1.17.1

Leonardo Collado-Torres

ERROR

derfinderHelper 1.17.1

Leonardo Collado-Torres

ERROR

derfinderPlot 1.17.1

Leonardo Collado-Torres

DEScan2 1.3.2

Dario Righelli

DESeq 1.35.1

Simon Anders

DESeq2 1.23.9

Michael Love

DEsingle 1.3.1

Zhun Miao

destiny 2.13.0

Philipp Angerer

ERROR

DEsubs 1.9.1

Aristidis G. Vrahatis , Panos Balomenos

DEXSeq 1.29.10

Alejandro Reyes

dexus 1.23.1

Guenter Klambauer

DFP 1.41.0

Rodrigo Alvarez-Glez

DiffBind 2.11.1

Rory Stark

diffcoexp 1.3.1

Wenbin Wei

diffcyt 1.3.24

Lukas M. Weber

diffGeneAnalysis 1.65.0

Choudary Jagarlamudi

diffHic 1.15.2

Aaron Lun

DiffLogo 2.7.0

Hendrik Treutler

diffloop 1.11.0

Caleb Lareau

diffuStats 1.3.1

Sergio Picart-Armada

diggit 1.15.0

Mariano J Alvarez

ERROR

skipped

Director 1.9.0

Katherine Icay

DirichletMultinomial 1.25.1

Martin Morgan

discordant 1.7.1

Charlotte Siska

WARNINGS

divergence 0.99.07

Wikum Dinalankara , Luigi Marchionni

dks 1.29.0

Jeffrey T. Leek

DMCHMM 1.5.0

Farhad Shokoohi

WARNINGS

DMRcaller 1.15.2

Nicolae Radu Zabet

DMRcate 1.19.0

Tim Peters

DMRforPairs 1.19.0

Martin Rijlaarsdam

DMRScan 1.9.0

Christian M Page

dmrseq 1.3.11

Keegan Korthauer

DNABarcodeCompatibility 0.99.9

Céline Trébeau

DNABarcodes 1.13.0

Tilo Buschmann

DNAcopy 1.57.0

Venkatraman E. Seshan

DNAshapeR 1.11.0

Tsu-Pei Chiu

DominoEffect 1.3.1

Marija Buljan

doppelgangR 1.11.1

Levi Waldron

DOQTL 1.19.0

Daniel Gatti

ERROR

Doscheda 1.5.1

Bruno Contrino

DOSE 3.9.4

Guangchuang Yu

doseR 0.99.15

ake.vastermark

drawProteins 1.3.0

Paul Brennan

DRIMSeq 1.11.2

Malgorzata Nowicka

DriverNet 1.23.0

Jiarui Ding

DropletUtils 1.3.13

Aaron Lun

DrugVsDisease 2.25.2

j. Saez-Rodriguez

dSimer 1.9.0

Peng Ni

ERROR

skipped

DSS 2.31.2

Hao Wu

DTA 2.29.0

Bjoern Schwalb

dualKS 1.43.0

Eric J. Kort

DupChecker 1.21.0

"Quanhu SHENG"

dupRadar 1.13.1

Sergi Sayols , Holger Klein

dyebias 1.43.0

Philip Lijnzaad

DynDoc 1.61.0

Bioconductor Package Maintainer

EasyqpcR 1.25.0

Le Pape Sylvain

easyRNASeq 2.19.2

Nicolas Delhomme

ERROR

skipped

EBarrays 2.47.0

Ming Yuan

EBcoexpress 1.27.0

John A. Dawson

WARNINGS

EBImage 4.25.0

Andrzej Oleś

EBSEA 1.11.0

Arfa Mehmood

EBSeq 1.23.1

Ning Leng

EBSeqHMM 1.17.1

Ning Leng

ecolitk 1.55.0

Laurent Gautier

WARNINGS

EDASeq 2.17.4

Davide Risso

EDDA 1.21.1

Chia Kuan Hui Burton , Niranjan Nagarajan

WARNINGS

edge 2.15.0

John D. Storey , Andrew J. Bass

edgeR 3.25.3

Yunshun Chen , Aaron Lun , Mark Robinson , Davis McCarthy , Gordon Smyth

eegc 1.9.0

Xiaoyuan Zhou

WARNINGS

EGAD 1.11.0

Sara Ballouz

EGSEA 1.11.1

Monther Alhamdoosh

eiR 1.23.0

Thomas Girke

eisa 1.35.0

Gabor Csardi

ELBOW 1.19.1

Graham Alvare , Xiangli Zhang

ELMER 2.7.5

Tiago Chedraoui Silva

ERROR

EMDomics 2.13.0

Sadhika Malladi and Daniel Schmolze

EmpiricalBrownsMethod 1.11.0

David Gibbs

ENCODExplorer 2.9.0

Charles Joly Beauparlant

EnhancedVolcano 1.1.3

Kevin Blighe

ENmix 1.19.2

Zongli Xu

EnrichedHeatmap 1.13.2

Zuguang Gu

EnrichmentBrowser 2.13.2

Ludwig Geistlinger

enrichplot 1.3.2

Guangchuang Yu

ensembldb 2.7.12

Johannes Rainer

ensemblVEP 1.25.0

Bioconductor Package Maintainer

ERROR

skipped

ENVISIONQuery 1.31.0

Alex Lisovich , Roger Day

EpiDISH 1.99.6

Shijie Charles Zheng

epigenomix 1.23.0

Hans-Ulrich Klein

epihet 0.99.8

Xiaowen Chen

epiNEM 1.7.0

Martin Pirkl

epivizr 2.13.0

Hector Corrada Bravo

epivizrChart 1.5.0

Hector Corrada Bravo

epivizrData 1.11.0

Hector Corrada Bravo

epivizrServer 1.11.0

Hector Corrada Bravo

epivizrStandalone 1.11.0

Hector Corrada Bravo

erccdashboard 1.17.1

Sarah Munro

erma 0.99.0

VJ Carey

ERSSA 1.1.1

Zixuan Shao

esATAC 1.5.4

Zheng Wei

esetVis 1.9.0

Laure Cougnaud

eudysbiome 1.13.1

Xiaoyuan Zhou

evaluomeR 0.99.84

José Antonio Bernabé-Díaz

EventPointer 2.1.4

Juan Pablo Romero

ERROR

skipped

ExCluster 1.1.1

R. Matthew Tanner

ExiMiR 2.25.0

Sylvain Gubian

exomeCopy 1.29.0

Michael Love

exomePeak 2.17.0

Lin Zhang , Lian Liu , Jia Meng

ERROR

ExperimentHub 1.9.3

Bioconductor Package Maintainer

ExperimentHubData 1.9.1

Bioconductor Package Maintainer

explorase 1.47.0

Michael Lawrence

ExpressionAtlas 1.11.0

Suhaib Mohammed

ERROR

ExpressionView 1.35.0

Gabor Csardi

fabia 2.29.1

Andreas Mitterecker

factDesign 1.59.0

Denise Scholtens

FamAgg 1.11.5

Johannes Rainer

farms 1.35.0

Djork-Arne Clevert

fastLiquidAssociation 1.19.0

Tina Gunderson

WARNINGS

FastqCleaner 1.1.0

Leandro Roser

fastseg 1.29.0

Guenter Klambauer

FCBF 1.1.1

Tiago Lubiana

fCCAC 1.9.0

Pedro Madrigal

fCI 1.13.0

Shaojun Tang

fdrame 1.55.0

Effi Kenigsberg

FELLA 1.3.1

Sergio Picart-Armada

ERROR

skipped

FEM 3.11.0

Zhen Yang

WARNINGS

ffpe 1.27.0

Levi Waldron

FGNet 3.17.0

Sara Aibar

fgsea 1.9.5

Alexey Sergushichev

FindMyFriends 1.13.0

Thomas Lin Pedersen

ERROR

FISHalyseR 1.17.0

Karesh Arunakirinathan

WARNINGS

fishpond 0.99.31

Michael Love

FitHiC 1.9.0

Ruyu Tan

flagme 1.39.1

Mark Robinson , Riccardo Romoli

WARNINGS

flipflop 1.21.0

Elsa Bernard

ERROR

skipped

flowAI 1.13.7

Gianni Monaco

flowBeads 1.21.1

Nikolas Pontikos

flowBin 1.19.1

Kieran O'Neill

flowcatchR 1.17.0

Federico Marini

flowCHIC 1.17.1

Author: Joachim Schumann

flowCL 1.21.1

Justin Meskas

flowClean 1.21.0

Kipper Fletez-Brant

WARNINGS

flowClust 3.21.3

Greg Finak , Mike Jiang

flowCore 1.49.10

Mike Jiang

flowCyBar 1.19.1

Joachim Schumann

flowDensity 1.17.2

Mehrnoush Malek

WARNINGS

flowFit 1.21.1

Davide Rambaldi

flowFP 1.41.1

Herb Holyst

flowMap 1.21.1

Chiaowen Joyce Hsiao

WARNINGS

flowMatch 1.19.1

Ariful Azad

flowMeans 1.43.1

Nima Aghaeepour

flowMerge 2.31.2

Greg Finak

flowPeaks 1.29.1

Yongchao Ge

flowPloidy 1.9.0

Tyler Smith

flowPlots 1.31.1

N. Hawkins

~~flowQ~~ 1.43.2

Mike Jiang

ERROR

skipped

flowQB 2.11.1

Josef Spidlen

ERROR

FlowRepositoryR 1.15.1

Josef Spidlen

FlowSOM 1.15.1

Sofie Van Gassen

flowStats 3.41.3

Greg Finak and Mike Jiang

flowTime 1.7.0

R. Clay Wright

flowTrans 1.35.1

Greg Finak

flowType 2.21.1

Nima Aghaeepour

flowUtils 1.47.1

Josef Spidlen

flowViz 1.47.4

Mike Jiang

flowVS 1.15.1

Ariful Azad

flowWorkspace 3.31.15

Greg Finak ,Mike Jiang

fmcsR 1.25.0

Thomas Girke

focalCall 1.17.0

Oscar Krijgsman

FoldGO 1.1.1

Daniil Wiebe

FourCSeq 1.17.0

Felix A. Klein

WARNINGS

FRGEpistasis 1.19.0

Futao Zhang

frma 1.35.0

Matthew N. McCall

frmaTools 1.35.0

Matthew N. McCall

FunChIP 1.9.0

Alice Parodi

WARNINGS

FunciSNP 1.27.0

Simon G. Coetzee

funtooNorm 1.7.0

Kathleen Klein

GA4GHclient 1.7.0

Welliton Souza

GA4GHshiny 1.5.0

Welliton Souza

gaga 2.29.1

David Rossell

gage 2.33.1

Weijun Luo

WARNINGS

gaggle 1.51.0

Christopher Bare

gaia 2.27.0

S. Morganella

GAPGOM 0.99.36

Casper Peters

ERROR

skipped

GAprediction 1.9.1

Jon Bohlin

garfield 1.11.0

Valentina Iotchkova

GARS 1.3.0

Mattia Chiesa

GateFinder 1.3.2

Nima Aghaeepour

gcapc 1.7.0

Mingxiang Teng

gcatest 1.13.0

Wei Hao , John D. Storey

gCMAP 1.27.0

Thomas Sandmann

gCMAPWeb 1.23.0

Thomas Sandmann

~~gCrisprTools~~ 1.11.2

Peter Haverty

ERROR

gcrma 2.55.0

Z. Wu

GDCRNATools 1.3.2

Ruidong Li

GDSArray 1.3.0

Qian Liu

gdsfmt 1.19.10

Xiuwen Zheng

geecc 1.17.1

Markus Boenn

GEM 1.9.0

Hong Pan

genArise 1.59.0

IFC Development Team

WARNINGS

genbankr 1.11.0

Gabriel Becker

GeneAccord 1.1.0

Ariane L. Moore

GeneAnswers 2.25.0

Lei Huang and Gang Feng

WARNINGS

geneAttribution 1.9.0

Arthur Wuster

GeneBreak 1.13.0

Evert van den Broek

geneClassifiers 1.7.0

R Kuiper

GeneExpressionSignature 1.29.0

Yang Cao , Fei Li

genefilter 1.65.0

Bioconductor Package Maintainer

WARNINGS

genefu 2.15.0

Benjamin Haibe-Kains

GeneGA 1.33.0

Zhenpeng Li

GeneGeneInteR 1.9.0

Mathieu Emily , Magalie Houee-Bigot

GeneMeta 1.55.0

Bioconductor Package Maintainer

GeneNetworkBuilder 1.25.0

Jianhong Ou

GeneOverlap 1.19.0

Li Shen, Mount Sinai

geneplast 1.9.0

Mauro Castro

geneplotter 1.61.0

Bioconductor Package Maintainer

geneRecommender 1.55.0

Greg Hather

GeneRegionScan 1.39.0

Lasse Folkersen

geneRxCluster 1.19.0

Charles Berry

GeneSelectMMD 2.27.0

Weiliang Qiu

WARNINGS

GENESIS 2.13.9

Stephanie M. Gogarten

GeneStructureTools 1.3.1

Beth Signal

geNetClassifier 1.23.0

Sara Aibar

GeneticsDesign 1.51.0

The R Genetics Project

GeneticsPed 1.45.0

David Henderson

geneXtendeR 1.9.0

Bohdan Khomtchouk

GENIE3 1.5.4

Van Anh Huynh-Thu

genoCN 1.35.0

Wei Sun

GenoGAM 2.1.9

Georg Stricker

WARNINGS

genomation 1.15.0

Altuna Akalin , Vedran Franke

GenomeGraphs 1.43.0

Steffen Durinck

GenomeInfoDb 1.19.3

Bioconductor Package Maintainer

genomeIntervals 1.39.0

Julien Gagneur

genomes 3.13.0

Chris Stubben

GenomicAlignments 1.19.1

Bioconductor Package Maintainer

WARNINGS

GenomicDataCommons 1.7.3

Sean Davis

WARNINGS

GenomicFeatures 1.35.9

Bioconductor Package Maintainer

ERROR

GenomicFiles 1.19.0

Bioconductor Package Maintainer

GenomicInteractions 1.17.0

Liz Ing-Simmons

GenomicRanges 1.35.1

Bioconductor Package Maintainer

WARNINGS

GenomicScores 1.7.0

Robert Castelo

WARNINGS

GenomicTuples 1.17.0

Peter Hickey

Genominator 1.37.0

James Bullard

genoset 1.39.0

Peter M. Haverty

WARNINGS

genotypeeval 1.15.0

Jennifer Tom

genphen 1.11.23

Simo Kitanovski

GenRank 1.11.0

Chakravarthi Kanduri

GenVisR 1.15.3

Zachary Skidmore

ERROR

GEOmetadb 1.45.0

Jack Zhu

GEOquery 2.51.5

Sean Davis

GEOsubmission 1.35.0

Alexandre Kuhn

gep2pep 1.3.1

Francesco Napolitano

gespeR 1.15.1

Fabian Schmich

WARNINGS

GEWIST 1.27.0

Wei Q. Deng

GGBase 3.45.0

VJ Carey

ggbio 1.31.2

Michael Lawrence

WARNINGS

ggcyto 1.11.4

Mike Jiang

GGtools 5.19.0

VJ Carey

ggtree 1.15.6

Guangchuang Yu

GIGSEA 1.1.0

Shijia Zhu

girafe 1.35.0

J. Toedling

GISPA 1.7.0

Bhakti Dwivedi

GLAD 2.47.0

Philippe Hupe

Glimma 1.11.1

Shian Su

glmSparseNet 1.1.0

André Veríssimo

ERROR

skipped

GlobalAncova 4.1.0

Manuela Hummel

globalSeq 1.11.2

Armin Rauschenberger

globaltest 5.37.1

Jelle Goeman

gmapR 1.25.3

Michael Lawrence

WARNINGS

GMRP 1.11.1

Yuan-De Tan

WARNINGS

GNET2 0.99.12

Chen Chen

GOexpress 1.17.1

Kevin Rue-Albrecht

GOfuncR 1.3.3

Steffi Grote

GOFunction 1.31.0

Jing Wang

GOpro 1.9.0

Lidia Chrabaszcz

WARNINGS

goProfiles 1.45.0

Alex Sanchez

GOSemSim 2.9.1

Guangchuang Yu

goseq 1.35.1

Nadia Davidson , Anthony Hawkins

GOSim 1.21.0

Holger Froehlich

goSTAG 1.7.1

Brian D. Bennett

GOstats 2.49.0

Bioconductor Package Maintainer

GOsummaries 2.19.0

Raivo Kolde

~~GOTHiC~~ 1.19.2

Borbala Mifsud

ERROR

goTools 1.57.0

Agnes Paquet

gpart 1.1.3

Sun Ah Kim

WARNINGS

gpls 1.55.0

Bioconductor Package Maintainer

WARNINGS

gprege 1.27.0

Alfredo Kalaitzis

gQTLBase 1.15.0

VJ Carey

gQTLstats 1.15.1

VJ Carey

graper 0.99.3

Britta Velten

graph 1.61.1

Bioconductor Package Maintainer

GraphAlignment 1.47.0

Joern P. Meier

GraphAT 1.55.0

Thomas LaFramboise

graphite 1.29.2

Gabriele Sales

GraphPAC 1.25.0

Gregory Ryslik

GRENITS 1.35.0

Edward Morrissey

GreyListChIP 1.15.0

Gordon Brown

GRmetrics 1.9.1

Nicholas Clark , Mario Medvedovic

groHMM 1.17.0

Anusha Nagari , Tulip Nandu , W. Lee Kraus

GRridge 1.7.4

Mark A. van de Wiel

WARNINGS

GSALightning 1.11.0

Billy Heung Wing Chang

GSAR 1.17.1

Yasir Rahmatallah , Galina Glazko

GSCA 2.13.0

Zhicheng Ji

GSEABase 1.45.0

Bioconductor Package Maintainer

GSEABenchmarkeR 1.3.2

Ludwig Geistlinger

GSEAlm 1.43.0

Assaf Oron

gsean 1.3.0

Dongmin Jung

GSReg 1.17.0

Bahman Afsari , Elana J. Fertig

WARNINGS

GSRI 2.31.0

Julian Gehring

GSVA 1.31.0

Justin Guinney

gtrellis 1.15.2

Zuguang Gu

GUIDEseq 1.13.1

Lihua Julie Zhu

Guitar 1.21.1

Jia Meng

ERROR

Gviz 1.27.6

Robert Ivanek

gwascat 2.15.1

VJ Carey

GWASTools 1.29.1

Stephanie M. Gogarten

gwasurvivr 1.1.0

Abbas Rizvi

h5vc 2.17.1

Paul Theodor Pyl

hapFabia 1.25.1

Andreas Mitterecker

Harman 1.11.0

Jason Ross

ERROR

skipped

Harshlight 1.55.0

Maurizio Pellegrino

HDF5Array 1.11.11

Hervé Pagès

WARNINGS

HDTD 1.17.0

Anestis Touloumis

heatmaps 1.7.0

Malcolm Perry

Heatplus 2.29.0

Alexander Ploner

HelloRanges 1.9.0

Michael Lawrence

HELP 1.41.0

Reid F. Thompson

HEM 1.55.0

HyungJun Cho

hiAnnotator 1.17.0

Nirav V Malani

HIBAG 1.19.2

Xiuwen Zheng

HiCBricks 1.1.21

Koustav Pal

HiCcompare 1.5.3

John Stansfield

hicrep 1.7.0

Tao Yang

hierGWAS 1.13.0

Laura Buzdugan

hierinf 1.1.1

Claude Renaux

HilbertCurve 1.13.2

Zuguang Gu

HilbertVis 1.41.0

Simon Anders

HilbertVisGUI 1.41.0

Simon Anders

hipathia 1.5.0

Marta R. Hidalgo

hiReadsProcessor 1.19.0

Nirav V Malani

HIREewas 1.1.2

Xiangyu Luo

HiTC 1.27.0

Nicolas Servant

hmdbQuery 1.3.0

VJ Carey

HMMcopy 1.25.0

Daniel Lai , Sohrab Shah

hopach 2.43.0

Katherine S. Pollard

HPAanalyze 1.1.1

Anh Nhat Tran

hpar 1.25.1

Laurent Gatto

HTqPCR 1.37.0

Heidi Dvinge

HTSanalyzeR 2.35.1

Xin Wang

WARNINGS

HTSeqGenie 4.13.0

Jens Reeder

~~htSeqTools~~ 1.31.1

Oscar Reina

ERROR

skipped

HTSFilter 1.23.1

Andrea Rau

HybridMTest 1.27.0

Demba Fofana

hypeR 1.00.0

Anthony Federico

hyperdraw 1.35.0

Paul Murrell

hypergraph 1.55.0

Bioconductor Package Maintainer

iASeq 1.27.1

Yingying Wei

iasva 1.1.1

Donghyung Lee , Anthony Cheng

iBBiG 1.27.0

Aedin Culhane

ibh 1.31.0

Kircicegi Korkmaz

iBMQ 1.23.0

Greg Imholte

iCARE 1.11.6

Bill Wheeler

WARNINGS

Icens 1.55.0

Bioconductor Package Maintainer

icetea 1.1.1

Vivek Bhardwaj

ERROR

iCheck 1.13.0

Weiliang Qiu

iChip 1.37.0

Qianxing Mo

iClusterPlus 1.19.0

Qianxing Mo , Ronglai Shen

iCNV 1.3.1

Zilu Zhou

WARNINGS

iCOBRA 1.11.1

Charlotte Soneson

ideal 1.7.4

Federico Marini

IdeoViz 1.19.0

Shraddha Pai

WARNINGS

idiogram 1.59.0

Karl J. Dykema

IdMappingAnalysis 1.27.0

Alex Lisovich , Roger Day

IdMappingRetrieval 1.31.0

Alex Lisovich , Roger Day

iGC 1.13.0

Liang-Bo Wang

igvR 1.3.6

Paul Shannon

IHW 1.11.1

Nikos Ignatiadis

illuminaio 0.25.0

Kasper Daniel Hansen

imageHTS 1.33.1

Joseph Barry

IMAS 1.7.1

Seonggyun Han

Imetagene 1.13.0

Audrey Lemacon

IMMAN 1.3.02

Minoo Ashtiani

ImmuneSpaceR 1.11.5

ImmuneSpace Package Maintainer

immunoClust 1.15.1

Till Soerensen

IMPCdata 1.19.0

Jeremy Mason

ImpulseDE 1.9.0

Jil Sander , Nir Yosef

ImpulseDE2 1.7.1

David S Fischer

impute 1.57.0

Balasubramanian Narasimhan

INDEED 1.1.1

Zhenzhi Li

InPAS 1.15.1

Jianhong Ou

ERROR

skipped

INPower 1.19.0

Bill Wheeler

INSPEcT 1.13.15

Stefano de Pretis

InTAD 1.3.0

Konstantin Okonechnikov

intansv 1.23.0

Wen Yao

InteractionSet 1.11.2

Aaron Lun

interactiveDisplay 1.21.0

Shawn Balcome

WARNINGS

interactiveDisplayBase 1.21.0

Shawn Balcome

WARNINGS

IntEREst 1.7.3

Ali Oghabian , Mikko Frilander

InterMineR 1.5.2

InterMine Team

IntramiRExploreR 1.5.0

Surajit Bhattacharya

inveRsion 1.31.0

Alejandro Caceres

WARNINGS

IONiseR 2.7.0

Mike Smith

iPAC 1.27.0

Gregory Ryslik

ipdDb 1.1.0

Steffen Klasberg

IPO 1.9.1

Thomas Riebenbauer

IPPD 1.31.0

Martin Slawski

IRanges 2.17.4

Bioconductor Package Maintainer

WARNINGS

iSEE 1.3.8

Charlotte Soneson

ERROR

iSeq 1.35.0

Qianxing Mo

isobar 1.29.1

Florian P Breitwieser

WARNINGS

IsoCorrectoR 1.1.4

Christian Kohler

IsoCorrectoRGUI 0.99.7

Christian Kohler

IsoformSwitchAnalyzeR 1.5.6

Kristoffer Vitting-Seerup

WARNINGS

IsoGeneGUI 2.19.0

Setia Pramana

ISoLDE 1.11.1

Christelle Reynès

WARNINGS

isomiRs 1.11.1

Lorena Pantano

ITALICS 2.43.0

Guillem Rigaill

iterativeBMA 1.41.0

Ka Yee Yeung

iterativeBMAsurv 1.41.0

Ka Yee Yeung

iterClust 1.5.0

Hongxu Ding

iteremoval 1.3.0

Jiacheng Chuan

IVAS 2.3.1

Seonggyun Han

WARNINGS

ivygapSE 1.5.1

VJ Carey

IWTomics 1.7.0

Marzia A Cremona

WARNINGS

joda 1.31.0

Ewa Szczurek

JunctionSeq 1.13.1

Stephen Hartley

karyoploteR 1.9.15

Bernat Gel

KCsmart 2.41.0

Jorma de Ronde

WARNINGS

kebabs 1.17.0

Ulrich Bodenhofer

WARNINGS

KEGGgraph 1.43.3

Jitao David Zhang

ERROR

skipped

KEGGlincs 1.9.1

Shana White , Mario Medvedovic

keggorthology 2.35.0

VJ Carey

KEGGprofile 1.25.1

Shilin Zhao

KEGGREST 1.23.0

Bioconductor Package Maintainer

kimod 1.11.0

M L Zingaretti

KinSwingR 1.1.3

Ashley J. Waardenberg

kissDE 1.3.0

Aurélie Siberchicot

lapmix 1.49.0

Yann Ruffieux

LBE 1.51.0

Cyril Dalmasso

ldblock 1.13.2

VJ Carey

LEA 2.5.0

Eric Frichot , Olivier Francois

LedPred 1.17.0

Aitor Gonzalez

les 1.33.0

Julian Gehring

levi 1.1.0

Jose Luiz Rybarczyk Filho

lfa 1.13.0

Wei Hao , John D. Storey

WARNINGS

limma 3.39.14

Gordon Smyth

limmaGUI 1.59.0

Gordon Smyth

LINC 1.11.0

Manuel Goepferich

LineagePulse 1.3.1

David S Fischer

WARNINGS

Linnorm 2.7.2

Ken Shun Hang Yip

WARNINGS

LiquidAssociation 1.37.0

Yen-Yi Ho

lmdme 1.25.0

Cristobal Fresno

LMGene 2.39.0

Blythe Durbin-Johnson

LOBSTAHS 1.9.1

James Collins

WARNINGS

loci2path 1.3.0

Tianlei Xu

logicFS 2.3.0

Holger Schwender

logitT 1.41.0

Tobias Guennel

Logolas 1.7.0

Kushal Dey

lol 1.31.0

Yinyin Yuan

LOLA 1.13.0

Nathan Sheffield

LoomExperiment 1.1.7

Bioconductor Package Maintainer

LowMACA 1.13.1

Stefano de Pretis , Giorgio Melloni

ERROR

skipped

LPE 1.57.0

Nitin Jain

LPEadj 1.43.0

Carl Murie

lpNet 2.15.0

Lars Kaderali

lpsymphony 1.11.0

Vladislav Kim

WARNINGS

LRBaseDbi 1.1.0

Koki Tsuyuzaki

lumi 2.35.0

Pan Du , Lei Huang , Gang Feng

WARNINGS

LVSmiRNA 1.33.0

Stefano Calza

WARNINGS

LymphoSeq 1.11.0

David Coffey

M3C 1.5.85

Christopher John

M3D 1.17.0

Tom Mayo

M3Drop 1.9.4

Tallulah Andrews

maanova 1.53.0

Keith Sheppard

macat 1.57.0

Joern Toedling

WARNINGS

maCorrPlot 1.53.0

Alexander Ploner

MACPET 1.3.3

Ioannis Vardaxis

made4 1.57.0

Aedin Culhane

WARNINGS

MADSEQ 1.9.0

Yu Kong

maftools 1.9.30

Anand Mayakonda

MAGeCKFlute 1.3.1

Wubing Zhang

maigesPack 1.47.0

Gustavo H. Esteves

MAIT 1.17.3

Pol Sola-Santos

makecdfenv 1.59.0

James W. MacDonald

MANOR 1.55.0

Pierre Neuvial

manta 1.29.1

Chris Berthiaume , Adrian Marchetti

MantelCorr 1.53.0

Brian Steinmeyer

mAPKL 1.13.0

Argiris Sakellariou

ERROR

maPredictDSC 1.21.0

Adi Laurentiu Tarca

mapscape 1.7.0

Maia Smith

WARNINGS

marray 1.61.0

Yee Hwa (Jean) Yang

martini 1.3.1

Hector Climente-Gonzalez

WARNINGS

maser 1.1.0

Diogo F.T. Veiga

maSigPro 1.55.0

Maria Jose Nueda

maskBAD 1.27.0

Michael Dannemann

MassArray 1.35.1

Reid F. Thompson

massiR 1.19.0

Sam Buckberry

MassSpecWavelet 1.49.1

Pan Du

MAST 1.9.2

Andrew McDavid

matchBox 1.25.0

Luigi Marchionni , Anuj Gupta

MatrixRider 1.15.0

Elena Grassi

matter 1.9.10

Kylie A. Bemis

MaxContrastProjection 1.7.1

Jan Sauer

MBAmethyl 1.17.0

Tao Wang

MBASED 1.17.0

Oleg Mayba

MBCB 1.37.0

Jeff Allen

mBPCR 1.37.0

P.M.V. Rancoita

MBttest 1.11.0

Yuan-De Tan

mcaGUI 1.31.0

Wade K. Copeland

WARNINGS

MCbiclust 1.7.1

Robert Bentham

ERROR

MCRestimate 2.39.0

Marc Johannes

mCSEA 1.3.4

Jordi Martorell-Marugán

mdgsa 1.15.0

David Montaner

mdp 1.3.0

Helder Nakaya

mdqc 1.45.0

Gabriela Cohen-Freue

MDTS 1.3.0

Jack M.. Fu

MEAL 1.13.0

Carlos Ruiz-Arenas

WARNINGS

MeasurementError.cor 1.55.0

Beiying Ding

MEDIPS 1.35.0

Lukas Chavez

MEDME 1.43.0

Mattia Pelizzola

WARNINGS

MEIGOR 1.17.0

Jose Egea

WARNINGS

Melissa 0.99.9

C. A. Kapourani

MergeMaid 2.55.0

Xiaogang Zhong

WARNINGS

Mergeomics 1.11.0

Zeyneb Kurt

MeSHDbi 1.19.0

Koki Tsuyuzaki

meshes 1.9.1

Guangchuang Yu

meshr 1.19.0

Koki Tsuyuzaki

messina 1.19.0

Mark Pinese

metaArray 1.61.0

Hyungwon Choi

Metab 1.17.1

Raphael Aggio

metabomxtr 1.17.1

Michael Nodzenski

MetaboSignal 1.13.0

Andrea Rodriguez-Martinez

metaCCA 1.11.0

Anna Cichonska

MetaCyto 1.5.1

Zicheng Hu

metagene 2.15.1

Charles Joly Beauparlant

metagenomeFeatures 2.3.4

Nathan D. Olson

metagenomeSeq 1.25.3

Joseph N. Paulson

ERROR

skipped

metahdep 1.41.0

John R. Stevens

WARNINGS

metaMS 1.19.1

Ron Wehrens

MetaNeighbor 1.3.1

Manthan Shah

ERROR

skipped

metaSeq 1.23.1

Koki Tsuyuzaki

metaseqR 1.23.1

Panagiotis Moulos

ERROR

metavizr 1.7.1

Hector Corrada Bravo

MetCirc 1.13.2

Thomas Naake

methimpute 1.5.1

Aaron Taudt

methInheritSim 1.5.1

Pascal Belleau

MethPed 1.11.1

Helena Carén

MethTargetedNGS 1.15.0

Muhammad Ahmer Jamil

methVisual 1.35.0

Arie Zackay

WARNINGS

methyAnalysis 1.25.0

Pan Du , Lei Huang , Gang Feng

WARNINGS

MethylAid 1.17.0

M. van Iterson

methylGSA 1.1.4

Xu Ren

methylInheritance 1.7.2

Astrid Deschenes

methylKit 1.9.3

Altuna Akalin , Alexander Gosdschan

MethylMix 2.13.0

Olivier Gevaert

methylMnM 1.21.0

Yan Zhou

methylPipe 1.17.1

Kamal Kishore

WARNINGS

MethylSeekR 1.23.0

Lukas Burger

methylumi 2.29.0

Sean Davis

WARNINGS

methyvim 1.5.0

Nima Hejazi

MetID 1.1.0

Zhenzhi Li

MetNet 1.1.1

Thomas Naake

mfa 1.5.1

Kieran Campbell

Mfuzz 2.43.0

Matthias Futschik

MGFM 1.17.0

Khadija El Amrani

MGFR 1.9.2

Khadija El Amrani

ERROR

skipped

mgsa 1.31.0

Sebastian Bauer

MiChip 1.37.0

Jonathon Blake

microbiome 1.5.31

Leo Lahti

WARNINGS

microRNA 1.41.0

"James F. Reid"

MIGSA 1.7.2

Juan C. Rodriguez

mimager 1.7.0

Aaron Wolen

MIMOSA 1.21.1

Greg Finak

WARNINGS

MineICA 1.23.0

Anne Biton

minet 3.41.0

Patrick E. Meyer

minfi 1.29.4

Kasper Daniel Hansen

MinimumDistance 1.27.0

Robert B Scharpf

ERROR

skipped

MiPP 1.55.0

Sukwoo Kim

MIRA 1.5.1

John Lawson

MiRaGE 1.25.1

Y-h. Taguchi

miRBaseConverter 1.7.0

Taosheng Xu

miRcomp 1.13.0

Matthew N. McCall

WARNINGS

mirIntegrator 1.13.0

Diana Diaz

miRLAB 1.13.0

Thuc Duy Le

miRmine 1.5.0

Dusan Randjelovic

miRNAmeConverter 1.11.0

Stefan J. Haunsberger

WARNINGS

miRNApath 1.43.0

James M. Ward

miRNAtap 1.17.0

T. Ian Simpson

miRSM 1.1.3

Junpeng Zhang

miRsponge 1.9.3

Junpeng Zhang

miRspongeR 1.9.3

Junpeng Zhang

Mirsynergy 1.19.0

Yue Li

missMethyl 1.17.1

Belinda Phipson

missRows 1.3.0

Gonzalez Ignacio

mitoODE 1.21.1

Gregoire Pau

mixOmics 6.7.1

Kim-Anh Le Cao

ERROR

skipped

MLInterfaces 1.63.2

V. Carey

mlm4omics 1.1.1

Irene SL Zeng

MLP 1.31.0

Tobias Verbeke

MLSeq 2.1.1

Gokmen Zararsiz

MMDiff2 1.11.0

Gabriele Schweikert

MmPalateMiRNA 1.33.0

Guy Brock

MODA 1.9.0

Dong Li

Modstrings 0.99.23

Felix G.M. Ernst

MOFA 0.99.14

Britta Velten

ERROR

skipped

mogsa 1.17.5

Chen Meng

monocle 2.11.1

Cole Trapnell

MoonlightR 1.9.0

Antonio Colaprico

ERROR

skipped

MoPS 1.17.0

Philipp Eser

mosaics 2.21.0

Dongjun Chung

motifbreakR 1.13.0

Simon Gert Coetzee

ERROR

skipped

motifcounter 1.7.0

Wolfgang Kopp

MotifDb 1.25.0

Paul Shannon

motifmatchr 1.5.0

Alicia Schep

motifRG 1.27.0

Zizhen Yao

motifStack 1.27.4

Jianhong Ou

MotIV 1.39.0

Eloi Mercier , Raphael Gottardo

WARNINGS

MPFE 1.19.0

Conrad Burden

mpra 1.5.4

Leslie Myint

MPRAnalyze 1.1.1

Tal Ashuach

msa 1.15.0

Ulrich Bodenhofer

WARNINGS

msgbsR 1.7.1

Benjamin Mayne

WARNINGS

MSGFgui 1.17.1

Thomas Lin Pedersen

MSGFplus 1.17.1

Thomas Lin Pedersen

msmsEDA 1.21.1

Josep Gregori

msmsTests 1.21.1

Josep Gregori i Font

MSnbase 2.9.3

Laurent Gatto

MSnID 1.17.1

Vlad Petyuk

msPurity 1.9.8

Thomas N. Lawson

MSstats 3.15.1

Meena Choi

MSstatsQC 2.1.1

Eralp Dogu

MSstatsQCgui 1.3.1

Eralp Dogu

MSstatsTMT 1.1.2

Ting Huang

MTseeker 1.1.6

Tim Triche

WARNINGS

Mulcom 1.33.0

Claudio Isella

ERROR

skipped

MultiAssayExperiment 1.9.18

Marcel Ramos

multiClust 1.13.0

Nathan Lawlor

MultiDataSet 1.11.0

Carlos Ruiz-Arenas

multiHiCcompare 1.1.3

John Stansfield

MultiMed 2.5.0

Simina M. Boca

multiMiR 1.5.0

Matt Mulvahill

multiOmicsViz 1.7.0

Jing Wang

multiscan 1.43.0

Mizanur Khondoker

multtest 2.39.0

Katherine S. Pollard

WARNINGS

muscle 3.25.0

Alex T. Kalinka

WARNINGS

MutationalPatterns 1.9.0

Roel Janssen

MVCClass 1.57.0

Elizabeth Whalen

MWASTools 1.7.0

Andrea Rodriguez-Martinez , Rafael Ayala

mygene 1.19.0

Adam Mark, Cyrus Afrasiabi, Chunlei Wu

myvariant 1.13.0

Adam Mark, Chunlei Wu

mzID 1.21.1

Thomas Lin Pedersen

mzR 2.17.2

Steffen Neumann

WARNINGS

NADfinder 1.7.3

Jianhong Ou

NanoStringDiff 1.13.0

tingting zhai ,hong wang

WARNINGS

NanoStringQCPro 1.15.0

Robert Ziman

NarrowPeaks 1.27.0

Pedro Madrigal

NBSplice 1.1.7

Gabriela Merino

ncdfFlow 2.29.3

Mike Jiang

NCIgraph 1.31.0

Laurent Jacob

ndexr 1.5.1

Florian Auer

NeighborNet 1.1.0

Sahar Ansari

nem 2.57.0

Holger Froehlich

WARNINGS

netbenchmark 1.15.0

Pau Bellot

WARNINGS

netbiov 1.17.0

Shailesh tripathi

nethet 1.15.0

Nicolas Staedler

ERROR

skipped

NetPathMiner 1.19.5

Ahmed Mohamed

netprioR 1.9.1

Fabian Schmich

netReg 1.7.1

Simon Dirmeier

WARNINGS

netresponse 1.43.0

Leo Lahti

WARNINGS

NetSAM 1.23.0

Bing Zhang

netSmooth 1.3.0

Jonathan Ronen

networkBMA 2.23.0

Ka Yee Yeung

WARNINGS

~~NGScopy~~ 1.17.2

Xiaobei Zhao

ERROR

skipped

nnNorm 2.47.0

Adi Laurentiu Tarca

NOISeq 2.27.1

Sonia Tarazona

nondetects 2.13.0

Valeriia Sherina

normalize450K 1.11.0

Jonathan Alexander Heiss

NormalyzerDE 1.1.15

Jakob Willforss

NormqPCR 1.29.0

James Perkins

normr 1.9.0

Johannes Helmuth

npGSEA 1.19.0

Jessica Larson

NTW 1.33.0

Yuanhua Liu

WARNINGS

nucleoSim 1.11.0

Astrid Deschenes

ERROR

nucleR 2.15.0

Ricard Illa

nuCpos 1.1.5

Hiroaki Kato

NuPoP 1.33.0

Ji-Ping Wang

occugene 1.43.0

Oliver Will

OCplus 1.57.0

Alexander Ploner

odseq 1.11.0

José Jiménez

OGSA 1.13.0

Michael F. Ochs

oligo 1.47.0

Benilton Carvalho

WARNINGS

oligoClasses 1.45.0

Benilton Carvalho and Robert Scharpf

ERROR

OLIN 1.61.0

Matthias Futschik

OLINgui 1.57.0

Matthias Futschik

OmaDB 1.99.2

Klara Kaleb , Adrian Altenhoff

ERROR

omicade4 1.23.0

Chen Meng

OmicCircos 1.21.0

Ying Hu

omicplotR 1.3.0

Daniel Giguere

omicRexposome 1.5.1

Carles Hernandez-Ferrer

OmicsMarkeR 1.15.0

Charles E. Determan Jr.

OMICsPCA 1.1.1

Subhadeep Das

omicsPrint 1.3.1

Davy Cats

Onassis 1.5.4

Eugenia Galeota

oncomix 1.5.0

Daniel Pique

OncoScore 1.11.0

Luca De Sano

OncoSimulR 2.13.2

Ramon Diaz-Uriarte

oneSENSE 1.5.1

Yong Kee Tan

WARNINGS

onlineFDR 1.1.1

David Robertson

ERROR

ontoProc 1.5.10

VJ Carey

openCyto 1.21.3

Mike Jiang

openPrimeR 1.5.1

Matthias Döring

openPrimeRui 1.5.1

Matthias Döring

oposSOM 2.1.1

Henry Loeffler-Wirth

WARNINGS

oppar 1.11.0

Soroor Hediyeh zadeh

OPWeight 1.5.1

Mohamad Hasan

OrderedList 1.55.0

Claudio Lottaz

ORFik 1.3.13

Kornel Labun

ERROR

skipped

Organism.dplyr 1.11.2

Martin Morgan

OrganismDbi 1.25.0

Biocore Data Team

WARNINGS

OSAT 1.31.0

Li Yan

Oscope 1.13.1

Ning Leng

OTUbase 1.33.0

Daniel Beck

OutlierD 1.47.0

Sukwoo Kim

OUTRIDER 1.1.4

Christian Mertes

OVESEG 0.99.2

Lulu Chen

PAA 1.17.0

Michael Turewicz , Martin Eisenacher

PADOG 1.25.0

Adi Laurentiu Tarca

PAIRADISE 0.99.6

Qiang Hu , Levon Demirdjian

paircompviz 1.21.0

Michal Burda

pandaR 1.15.0

Joseph N. Paulson , Dan Schlauch

panelcn.mops 1.5.0

Gundula Povysil

panp 1.53.0

Peter Warren

PANR 1.29.1

Xin Wang

PanVizGenerator 1.11.0

Thomas Lin Pedersen

PAPi 1.23.1

Raphael Aggio

parglms 1.15.1

VJ Carey

parody 1.41.0

VJ Carey

Path2PPI 1.13.0

Oliver Philipp

pathifier 1.21.0

Assif Yitzhaky

PathNet 1.23.0

Jason B. Smith

ERROR

PathoStat 1.9.4

Solaiappan Manimaran

ERROR

pathprint 1.13.0

Sokratis Kariotis

pathRender 1.51.0

Vince Carey

pathVar 1.13.0

Samuel Zimmerman

pathview 1.23.3

Weijun Luo

WARNINGS

pathwayPCA 0.99.5

Gabriel Odom

PathwaySplice 1.7.1

Aimin Yan

paxtoolsr 1.17.0

Augustin Luna

Pbase 0.23.1

Sebastian Gibb

pcaExplorer 2.9.5

Federico Marini

pcaGoPromoter 1.27.0

Morten Hansen

pcaMethods 1.75.1

Henning Redestig

PCAN 1.11.0

Matthew Page and Patrice Godard

PCAtools 0.99.13

Kevin Blighe , Myles Lewis

pcot2 1.51.0

Sarah Song

PCpheno 1.45.0

Nolwenn Le Meur

pcxn 2.5.0

Sokratis Kariotis

pdInfoBuilder 1.47.1

Benilton Carvalho

PECA 1.19.0

Tomi Suomi

PepsNMR 1.1.3

Manon Martin

pepStat 1.17.0

Gregory C Imholte

pepXMLTab 1.17.1

Xiaojing Wang

perturbatr 1.3.1

Simon Dirmeier

PGA 1.13.1

Bo Wen , Shaohang Xu

pgca 1.7.1

Gabriela Cohen-Freue

PGSEA 1.57.0

Karl Dykema

phantasus 1.3.4

Alexey Sergushichev

WARNINGS

PharmacoGx 1.13.0

Benjamin Haibe-Kains

ERROR

skipped

phemd 0.99.37

William S Chen

phenopath 1.7.2

Kieran Campbell

phenoTest 1.31.0

Evarist Planet

PhenStat 2.19.0

Hamed Haselimashhadi

WARNINGS

philr 1.9.1

Justin Silverman

phosphonormalizer 1.7.0

Sohrab Saraei

phyloseq 1.27.2

Paul J. McMurdie

ERROR

Pi 1.11.0

Hai Fang

piano 1.23.0

Leif Varemo

pickgene 1.55.0

Brian S. Yandell

WARNINGS

PICS 2.27.0

Renan Sauteraud

WARNINGS

Pigengene 1.9.18

Habil Zare

PING 2.27.0

Renan Sauteraud

WARNINGS

pint 1.33.0

Olli-Pekka Huovilainen

pkgDepTools 1.49.0

Bioconductor Package Maintainer

plateCore 1.41.1

Errol Strain

ERROR

skipped

plethy 1.21.0

Daniel Bottomly

plgem 1.55.1

Norman Pavelka

plier 1.53.0

Crispin Miller

plotGrouper 1.1.1

John D. Gagnon

PLPE 1.43.0

Soo-heang Eo

plrs 1.23.0

Gwenael G.R. Leday to

plw 1.43.0

Magnus Astrand

plyranges 1.3.4

Stuart Lee

pmm 1.15.0

Anna Drewek

podkat 1.15.1

Ulrich Bodenhofer

pogos 1.3.1

VJ Carey

polyester 1.19.0

Jack Fu , Jeff Leek

Polyfit 1.17.1

Conrad Burden

POST 1.7.0

Xueyuan Cao

WARNINGS

PoTRA 0.99.83

Valentin Dinu

WARNINGS

PowerExplorer 1.3.1

Xu Qiao

powerTCR 1.3.0

Hillary Koch

PPInfer 1.9.1

Dongmin Jung

ppiStats 1.49.0

Bioconductor Package Maintainer

pqsfinder 1.99.6

Jiri Hon

prada 1.59.1

Florian Hahne

pram 0.99.18

Peng Liu

prebs 1.23.1

Karolis Uziela

PrecisionTrialDrawer 0.99.17

Giorgio Melloni

PREDA 1.29.0

Francesco Ferrari

predictionet 1.29.0

Benjamin Haibe-Kains

preprocessCore 1.45.0

Ben Bolstad

primirTSS 1.1.1

Pumin Li

PrInCE 0.99.13

Michael Skinnider

Prize 1.13.1

Daryanaz Dargahi

proBAMr 1.17.1

Xiaojing Wang

proBatch 0.99.25

Chloe H. Lee

PROcess 1.59.1

Xiaochun Li

procoil 2.11.0

Ulrich Bodenhofer

~~ProCoNA~~ 1.21.1

David L Gibbs

ERROR

skipped

proFIA 1.9.1

Alexis Delabriere

WARNINGS

profileScoreDist 1.11.0

Paal O. Westermark

progeny 1.5.1

Michael Schubert

ERROR

skipped

projectR 0.99.628

Genevieve Stein-O'Brien

pRoloc 1.23.2

Laurent Gatto

ERROR

skipped

pRolocGUI 1.17.0

Laurent Gatto

PROMISE 1.35.0

Stan Pounds , Xueyuan Cao

PROPER 1.15.1

Hao Wu

WARNINGS

PROPS 1.5.0

Lichy Han

Prostar 1.15.17

Samuel Wieczorek

proteinProfiles 1.23.0

Julian Gehring

ProteomicsAnnotationHubData 1.13.0

Laurent Gatto

ProteoMM 1.1.1

Yuliya V Karpievitch

proteoQC 1.19.1

Bo Wen

ProtGenerics 1.15.0

Laurent Gatto

PSEA 1.17.0

Alexandre Kuhn

psichomics 1.9.2

Nuno Saraiva-Agostinho

PSICQUIC 1.21.0

Paul Shannon

ERROR

skipped

psygenet2r 1.15.0

Alba Gutierrez-Sacristan

WARNINGS

puma 3.25.0

Xuejun Liu

ERROR

skipped

PureCN 1.13.22

Markus Riester

pvac 1.31.0

Jun Lu , Pierre R. Bushel

pvca 1.23.0

Jianying LI

Pviz 1.17.0

Renan Sauteraud

PWMEnrich 4.19.0

Robert Stojnic

pwOmics 1.15.0

Maren Sitte

qckitfastq 0.99.22

August Guang

qcmetrics 1.21.1

Laurent Gatto

QDNAseq 1.19.0

Daoud Sie

WARNINGS

qpcrNorm 1.41.0

Jessica Mar

qpgraph 2.17.0

Robert Castelo

qPLEXanalyzer 1.1.3

Ashley Sawle

qrqc 1.37.1

Vince Buffalo

WARNINGS

qsea 1.9.1

Matthias Lienhard

qsmooth 0.99.10

Stephanie C. Hicks

ERROR

skipped

QSutils 1.1.0

Mercedes Guerrero-Murillo

QUALIFIER 1.27.1

Mike Jiang

WARNINGS

quantro 1.17.5

Stephanie Hicks

quantsmooth 1.49.0

Jan Oosting

QuartPAC 1.15.0

Gregory Ryslik

QuasR 1.23.18

Michael Stadler

QuaternaryProd 1.17.0

Carl Tony Fakhry

QUBIC 1.11.0

Yu Zhang

qusage 2.17.0

Christopher Bolen

qvalue 2.15.0

John D. Storey , Andrew J. Bass

R3CPET 1.15.0

Mohamed Nadhir Djekidel

r3Cseq 1.29.1

Supat Thongjuea or

R453Plus1Toolbox 1.33.0

Hans-Ulrich Klein

R4RNA 1.11.0

Daniel Lai

RaggedExperiment 1.7.5

Martin Morgan

rain 1.17.0

Paul F. Thaben

rama 1.57.0

Raphael Gottardo

WARNINGS

ramwas 1.7.2

Andrey A Shabalin

RandomWalkRestartMH 1.3.0

Alberto Valdeolivas Urbelz

randPack 1.29.0

Robert Gentleman

RankProd 3.9.0

Francesco Del Carratore

RareVariantVis 2.11.0

Tomasz Stokowy

Rariant 1.19.0

Julian Gehring

WARNINGS

RbcBook1 1.51.0

Vince Carey

RBGL 1.59.5

Bioconductor Package Maintainer

RBioinf 1.43.0

Robert Gentleman

rBiopaxParser 2.23.0

Frank Kramer

RBM 1.15.0

Dongmei Li

Rbowtie 1.23.3

Michael Stadler

Rbowtie2 1.5.0

Zheng Wei

rbsurv 2.41.0

Soo-heang Eo

Rcade 1.25.0

Jonathan Cairns

RCAS 1.9.0

Bora Uyar

RCASPAR 1.29.0

Douaa Mugahid , Lars Kaderali

rcellminer 2.5.0

Augustin Luna , Vinodh Rajapakse

rCGH 1.13.0

Frederic Commo

Rchemcpp 2.21.1

Guenter Klambauer

ERROR

skipped

RchyOptimyx 2.23.0

Adrin Jalali , Nima Aghaeepour

RcisTarget 1.3.5

Sara Aibar

RCM 0.99.1

Joris Meys

Rcpi 1.19.2

Nan Xiao

Rcwl 0.99.17

Qiang Hu

RcwlPipelines 0.99.11

Qiang Hu

RCy3 2.3.12

Alexander Pico , Tanja Muetze , Paul Shannon

RCyjs 2.5.12

Paul Shannon

WARNINGS

RDAVIDWebService 1.21.0

Cristobal Fresno

WARNINGS

rDGIdb 1.9.0

Thomas Thurnherr

Rdisop 1.43.3

Steffen Neumann

RDRToolbox 1.33.1

Christoph Bartenhagen

ReactomePA 1.27.0

Guangchuang Yu

readat 1.9.0

Richard Cotton

ReadqPCR 1.29.0

James Perkins

reb 1.61.0

Karl J. Dykema

REBET 1.1.0

Bill Wheeler

recount 1.9.2

Leonardo Collado-Torres

ERROR

recoup 1.11.1

Panagiotis Moulos

RedeR 1.31.0

Mauro Castro

REDseq 1.29.0

Lihua Julie Zhu

RefNet 1.19.0

Paul Shannon

ERROR

skipped

RefPlus 1.53.0

Kai-Ming Chang

regioneR 1.15.2

Bernat Gel

regionReport 1.17.1

Leonardo Collado-Torres

regsplice 1.9.1

Lukas M. Weber

REMP 1.7.1

Yinan Zheng

ERROR

skipped

Repitools 1.29.0

Mark Robinson

ReportingTools 2.23.1

Jason A. Hackney , Gabriel Becker

ReQON 1.29.0

Christopher Cabanski

restfulSE 1.5.1

Shweta Gopaulakrishnan

rexposome 1.5.0

Carles Hernandez-Ferrer

rfPred 1.21.0

Hugo Varet

rGADEM 2.31.0

Arnaud Droit

RGalaxy 1.27.0

Bioconductor Package Maintainer

Rgin 1.3.1

Hector Climente-Gonzalez

WARNINGS

RGMQL 1.3.0

Simone Pallotta

RGraph2js 1.11.0

Stephane Cano

Rgraphviz 2.27.0

Kasper Daniel Hansen

WARNINGS

rGREAT 1.15.1

Zuguang Gu

RGSEA 1.17.0

Chengcheng Ma

rgsepd 1.15.16

Karl Stamm

ERROR

skipped

rhdf5 2.27.15

Mike Smith

rhdf5client 1.5.1

Samuela Pollack

WARNINGS

Rhdf5lib 1.5.4

Mike Smith

Rhisat2 0.99.6

Charlotte Soneson

Rhtslib 1.15.5

Bioconductor Package Maintainer

WARNINGS

rHVDM 1.49.0

Martino Barenco

ERROR

RiboProfiling 1.13.0

A. Popa

WARNINGS

riboSeqR 1.17.0

Thomas J. Hardcastle

RImmPort 1.11.0

Zicheng Hu , Ravi Shankar

Ringo 1.47.0

J. Toedling

RIPSeeker 1.23.0

Yue Li

Risa 1.25.0

Alejandra Gonzalez-Beltran

RITAN 1.7.0

Michael Zimmermann

WARNINGS

RIVER 1.7.0

Yungil Kim

RJMCMCNucleosomes 1.7.0

Astrid Deschênes

RLMM 1.45.0

Nusrat Rabbee

Rmagpie 1.39.0

Camille Maumet

RMassBank 2.11.2

RMassBank at Eawag

ERROR

skipped

~~rMAT~~ 3.33.1

Arnaud Droit and Raphael Gottardo

ERROR

skipped

rmelting 0.99.7

J. Aravind

RmiR 1.39.0

Francesco Favero

Rmmquant 1.1.2

Zytnicki Matthias

RNAdecay 1.3.1

Reed Sorenson

WARNINGS

RNAinteract 1.31.1

Bernd Fischer

RNAither 2.31.1

Lars Kaderali

RNAprobR 1.15.0

Nikos Sidiropoulos

rnaseqcomp 1.13.0

Mingxiang Teng

rnaSeqMap 2.41.1

Michal Okoniewski

RNASeqPower 1.23.1

Terry M Therneau

RNASeqR 1.1.3

Kuan-Hao Chao

RnaSeqSampleSize 1.15.2

Shilin Zhao

RnBeads 2.1.0

Fabian Mueller

Rnits 1.17.2

Dipen P. Sangurdekar

roar 1.19.0

Elena Grassi

ROC 1.59.0

Vince Carey

Roleswitch 1.21.0

Yue Li

ERROR

skipped

rols 2.11.1

Laurent Gatto

ERROR

ROntoTools 2.11.0

Calin Voichita

ropls 1.15.26

Etienne A. Thevenot

ROTS 1.11.2

Tomi Suomi

RPA 1.39.0

Leo Lahti

RProtoBufLib 1.5.0

Mike Jiang

WARNINGS

RpsiXML 2.25.0

Jitao David Zhang

rpx 1.19.1

Laurent Gatto

Rqc 1.17.3

Welliton Souza

rqt 1.9.0

Ilya Y. Zhbannikov

rqubic 1.29.0

Jitao David Zhang

WARNINGS

rRDP 1.17.0

Michael Hahsler

RRHO 1.23.0

Jonathan Rosenblatt

Rsamtools 1.99.5

Bioconductor Package Maintainer

rsbml 2.41.1

Michael Lawrence

WARNINGS

rScudo 0.99.6

Matteo Ciciani

RSeqAn 1.3.2

August Guang

rSFFreader 0.31.0

Matt Settles

WARNINGS

Rsubread 1.33.33

Wei Shi , Yang Liao and Gordon K Smyth

RSVSim 1.23.1

Christoph Bartenhagen

rTANDEM 1.23.1

Frederic Fournier

RTCA 1.35.1

Jitao David Zhang

RTCGA 1.13.1

Marcin Kosinski

RTCGAToolbox 2.13.9

Marcel Ramos

RTN 2.7.3

Mauro Castro

RTNduals 1.7.2

Mauro Castro , Clarice Groeneveld

RTNsurvival 1.7.4

Clarice Groeneveld , Mauro A. A. Castro

RTopper 1.29.0

Luigi Marchionni

rtracklayer 1.43.3

Michael Lawrence

WARNINGS

Rtreemix 1.45.0

Jasmina Bogojeska

rTRM 1.21.0

Diego Diez

rTRMui 1.21.0

Diego Diez

runibic 1.5.0

Patryk Orzechowski

RUVcorr 1.15.0

Saskia Freytag

RUVnormalize 1.17.0

Laurent Jacob

RUVSeq 1.17.1

Davide Risso

RVS 1.5.4

Thomas Sherman

rWikiPathways 1.3.4

Egon Willighagen , Alexander Pico

S4Vectors 0.21.22

Bioconductor Package Maintainer

WARNINGS

safe 3.23.0

William T. Barry

sagenhaft 1.53.0

Tim Beissbarth

SAGx 1.57.0

Per Broberg,

samExploreR 1.7.1

shailesh tripathi

sampleClassifier 1.7.1

Khadija El Amrani

SamSPECTRAL 1.37.4

Habil

WARNINGS

sangerseqR 1.19.0

Jonathon Hill

SANTA 2.21.0

Alex J. Cornish

WARNINGS

sapFinder 1.21.1

Shaohang Xu , Bo Wen

savR 1.21.0

R. Brent Calder

SBMLR 1.79.0

Tomas Radivoyevitch

SC3 1.11.1

Vladimir Kiselev

Scale4C 1.5.0

Carolin Walter

SCAN.UPC 2.25.1

Stephen R. Piccolo

scater 1.11.15

Davis McCarthy

SCBN 1.1.1

Yan Zhou

WARNINGS

scDD 1.7.3

Keegan Korthauer

scde 2.11.1

Jean Fan

WARNINGS

scds 0.99.4

Dennis Kostka

scFeatureFilter 1.3.1

Guillaume Devailly

scfind 1.5.1

Vladimir Kiselev

ScISI 1.55.0

Tony Chiang

scmap 1.5.1

Vladimir Kiselev

scmeth 1.3.3

Divy Kangeyan

SCnorm 1.5.7

Rhonda Bacher

scone 1.7.1

Michael Cole

Sconify 1.3.1

Tyler J Burns

WARNINGS

scoreInvHap 1.5.0

Carlos Ruiz

WARNINGS

scPipe 1.5.1

Luyi Tian

scran 1.11.25

Aaron Lun

scruff 1.1.6

Zhe Wang

ERROR

skipped

scsR 1.19.0

Andrea Franceschini , Roger Meier , Christian von Mering

scTensor 0.99.22

Koki Tsuyuzaki

WARNINGS

SDAMS 1.3.1

Yuntong Li

segmentSeq 2.17.0

Thomas J. Hardcastle

SELEX 1.15.0

Harmen Bussemaker

SemDist 1.17.0

Ian Gonzalez

semisup 1.7.1

Armin Rauschenberger

SEPA 1.13.0

Zhicheng Ji

ERROR

skipped

SEPIRA 1.3.0

Yuting Chen

seq2pathway 1.15.0

Xinan Yang with contribution from Zhezhen Wang

ERROR

SeqArray 1.23.9

Xiuwen Zheng

seqbias 1.31.1

Daniel Jones

seqCAT 1.5.3

Erik Fasterius

seqCNA 1.29.0

David Mosen-Ansorena

seqcombo 1.5.1

Guangchuang Yu

SeqGSEA 1.23.4

Xi Wang

ERROR

skipped

seqLogo 1.49.0

Oliver Bembom

seqPattern 1.15.0

Vanja Haberle

seqplots 1.21.1

Przemyslaw Stempor

ERROR

skipped

seqsetvis 1.3.6

Joseph R Boyd

SeqSQC 1.5.0

Qian Liu

seqTools 1.17.0

Wolfgang Kaisers

WARNINGS

SeqVarTools 1.21.3

Stephanie M. Gogarten

sesame 1.1.15

Wanding Zhou

sevenbridges 1.13.5

Nan Xiao

sevenC 1.3.0

Jonas Ibn-Salem

SGSeq 1.17.2

Leonard Goldstein

shinyMethyl 1.19.0

Jean-Philippe Fortin

shinyTANDEM 1.21.1

Frederic Fournier

ShortRead 1.41.0

Bioconductor Package Maintainer

SIAMCAT 1.3.1

Konrad Zych

SICtools 1.13.0

Xiaobin Xing

WARNINGS

sigaR 1.31.0

Wessel N. van Wieringen

SigCheck 2.15.0

Rory Stark

sigFeature 1.1.0

Pijush Das Developer

SigFuge 1.21.0

Patrick Kimes

siggenes 1.57.4

Holger Schwender

sights 1.9.1

Elika Garg

signeR 1.9.2

Renan Valieris

signet 1.3.1

Alexandre Gouy

sigPathway 1.51.0

Weil Lai

sigsquared 1.15.0

UnJin Lee

SIM 1.53.0

Renee X. de Menezes

SIMAT 1.15.1

M. R. Nezami Ranjbar

SimBindProfiles 1.21.0

Bettina Fischer

SIMD 1.1.1

Jiadi Zhu

WARNINGS

similaRpeak 1.15.0

Astrid Deschenes

SIMLR 1.9.1

Luca De Sano

simpleaffy 2.59.0

Crispin Miller

WARNINGS

simulatorZ 1.17.0

Yuqing Zhang

sincell 1.15.1

Miguel Julia , Antonio Rausell

SingleCellExperiment 1.5.2

Davide Risso

singleCellTK 1.3.7

David Jenkins

singscore 1.3.4

Dharmesh D. Bhuva

SISPA 1.13.0

Bhakti Dwivedi

WARNINGS

sitePath 0.99.24

Chengyang Ji

sizepower 1.53.0

Weiliang Qiu

skewr 1.15.0

Ryan Putney

slalom 1.5.1

Davis McCarthy

SLGI 1.43.0

Nolwenn Le Meur

slingshot 1.1.2

Kelly Street

slinky 1.1.1

Eric J. Kort

SLqPCR 1.49.0

Matthias Kohl

SMAD 0.99.8

Qingzhou Zhang

SMAP 1.47.0

Robin Andersson

SMITE 1.11.1

Neil Ari Wijetunga

SNAGEE 1.23.0

David Venet

snapCGH 1.53.0

John Marioni

snm 1.31.0

John D. Storey

SNPchip 2.29.0

Robert Scharpf

ERROR

SNPediaR 1.9.0

David Montaner

SNPhood 1.13.0

Christian Arnold

SNPRelate 1.17.2

Xiuwen Zheng

snpStats 1.33.0

David Clayton

soGGi 1.15.1

Tom Carroll

WARNINGS

SomaticSignatures 2.19.1

Julian Gehring

SpacePAC 1.21.0

Gregory Ryslik

sparseDOSSA 1.7.1

Boyu Ren, Emma Schwager

sparsenetgls 1.1.1

Irene Zeng

SparseSignatures 1.3.0

Luca De Sano

SpatialCPie 0.99.101

Joseph Bergenstraahle

specL 1.17.3

Christian Panse

SpeCond 1.37.0

Florence Cavalli

SpectralTAD 0.99.14

Kellen Cresswell

SPEM 1.23.0

Xinyi YANG

SPIA 2.35.0

Adi Laurentiu Tarca

SpidermiR 1.13.3

Claudia Cava

WARNINGS

spikeLI 2.43.0

Enrico Carlon

spkTools 1.39.0

Matthew N McCall

splatter 1.7.2

Luke Zappia

splicegear 1.55.0

Laurent Gautier

~~spliceSites~~ 1.31.1

Wolfgang Kaisers

ERROR

skipped

SplicingGraphs 1.23.3

H. Pagès

WARNINGS

splineTimeR 1.11.0

Herbert Braselmann

SPLINTER 1.9.1

Diana Low

splots 1.49.0

Wolfgang Huber

SPONGE 1.5.0

Markus List

ERROR

spotSegmentation 1.57.0

Chris Fraley

WARNINGS

SQUADD 1.33.0

Martial Sankar

SRAdb 1.45.0

Jack Zhu

sRAP 1.23.0

Charles Warden

WARNINGS

SRGnet 1.9.0

Isar Nassiri

srnadiff 1.3.1

Matthias Zytnicki

sscore 1.55.0

Richard Kennedy

sscu 2.13.0

Yu Sun

WARNINGS

sSeq 1.21.1

Danni Yu

ssize 1.57.0

Gregory R. Warnes

SSPA 2.23.1

Maarten van Iterson

ssviz 1.17.1

Diana Low

stageR 1.5.1

Koen Van den Berge

WARNINGS

STAN 2.11.0

Rafael Campos-Martin

staRank 1.25.1

Juliane Siebourg

StarBioTrek 1.9.1

Claudia Cava

Starr 1.39.0

Benedikt Zacher

STATegRa 1.19.0

David Gomez-Cabrero , Núria Planell

statTarget 1.13.7

Hemi Luan

stepNorm 1.55.0

Yuanyuan Xiao

strandCheckR 1.1.1

Thu-Hien To

Streamer 1.29.1

Martin Morgan

STRINGdb 1.23.0

Damian Szklarczyk

STROMA4 1.7.1

Sadiq Saleh

Structstrings 0.99.9

Felix GM Ernst

subSeq 1.13.1

Andrew J. Bass , John D. Storey

SummarizedBenchmark 2.1.1

Alejandro Reyes , Patrick Kimes

SummarizedExperiment 1.13.0

Bioconductor Package Maintainer

supraHex 1.21.1

Hai Fang

survcomp 1.33.0

Benjamin Haibe-Kains , Markus Schroeder , Catharina Olsen

WARNINGS

survtype 0.99.10

Dongmin Jung

Sushi 1.21.0

Douglas H Phanstiel

WARNINGS

sva 3.31.1

Jeffrey T. Leek , John D. Storey

SVAPLSseq 1.9.1

Sutirtha Chakraborty

SVM2CRM 1.15.0

Guidantonio Malagoli Tagliazucchi

WARNINGS

SWATH2stats 1.13.5

Peter Blattmann

SwathXtend 2.5.0

Jemma Wu

WARNINGS

swfdr 1.9.0

Simina M. Boca , Jeffrey T. Leek

SwimR 1.21.0

Randy Blakely

switchBox 1.19.0

Bahman Afsari , Luigi Marchionni

WARNINGS

switchde 1.9.1

Kieran Campbell

synapter 2.7.1

Laurent Gatto

synergyfinder 1.9.0

Liye He

synlet 1.13.1

Chunxuan Shao

systemPipeR 1.17.6

Thomas Girke

TargetScore 1.21.0

Yue Li

TargetSearch 1.39.2

Alvaro Cuadros-Inostroza

TarSeqQC 1.13.1

Gabriela Merino

TCC 1.23.2

Jianqiang Sun

TCGAbiolinks 2.11.5

Antonio Colaprico

WARNINGS

TCGAbiolinksGUI 1.9.2

Tiago C. Silva

TCGAutils 1.3.33

Marcel Ramos

TCseq 1.7.1

Mengjun Wu

ERROR

skipped

TDARACNE 1.33.0

Zoppoli Pietro

tenXplore 1.5.1

VJ Carey

TEQC 4.5.0

Manuela Hummel

ternarynet 1.27.0

Matthew N. McCall

TFARM 1.5.0

Liuba Nausicaa Martino

TFBSTools 1.21.2

Ge Tan

TFEA.ChIP 1.3.5

Laura Puente Santamaría

ERROR

TFHAZ 1.5.0

Alberto Marchesi

TFutils 1.3.4

Shweta Gopaulakrishnan

WARNINGS

tigre 1.37.0

Antti Honkela

ERROR

tilingArray 1.61.0

Zhenyu Xu

timecourse 1.55.0

Yu Chuan Tai

timescape 1.7.0

Maia Smith

WARNINGS

TimeSeriesExperiment 1.1.4

Lan Huong Nguyen

TIN 1.15.0

Bjarne Johannessen

TissueEnrich 1.3.1

Ashish Jain

TitanCNA 1.21.2

Gavin Ha

WARNINGS

tkWidgets 1.61.0

J. Zhang

TMixClust 1.5.0

Monica Golumbeanu

TNBC.CMS 0.99.10

Doyeong Yu

TnT 1.5.0

Jialin Ma

tofsims 1.11.1

Lorenz Gerber

ToPASeq 1.17.1

Ludwig Geistlinger

topconfects 0.99.5

Paul Harrison

topdownr 1.5.6

Sebastian Gibb

topGO 2.35.0

Adrian Alexa

TPP 3.11.1

Dorothee Childs

tracktables 1.17.0

Tom Carroll

WARNINGS

trackViewer 1.19.28

Jianhong Ou

transcriptogramer 1.5.6

Diego Morais

transcriptR 1.11.1

Armen R. Karapetyan

transite 1.1.2

Konstantin Krismer

tRanslatome 1.21.0

Toma Tebaldi , Erik Dassi

TransView 1.27.2

Julius Muller

traseR 1.13.0

li chen

treeio 1.7.5

Guangchuang Yu

trena 1.5.8

Paul Shannon

ERROR

Trendy 1.5.6

Rhonda Bacher

WARNINGS

triform 1.25.1

Thomas Carroll

trigger 1.29.0

John D. Storey

trio 3.21.9

Holger Schwender

triplex 1.23.0

Jiri Hon

ERROR

skipped

tRNA 1.1.2

Felix GM Ernst

tRNAdbImport 1.1.1

Felix GM Ernst

tRNAscanImport 1.3.2

Felix GM Ernst

TRONCO 2.15.2

Luca De Sano

TSCAN 1.21.0

Zhicheng Ji

tspair 1.41.0

Jeffrey T. Leek

TSRchitect 1.9.0

R. Taylor Raborn

~~TSSi~~ 1.29.1

Julian Gehring

ERROR

skipped

TTMap 1.5.0

Rachel Jeitziner

TurboNorm 1.31.0

Maarten van Iterson

TVTB 1.9.2

Kevin Rue-Albrecht

tweeDEseq 1.29.1

Juan R Gonzalez

twilight 1.59.0

Stefanie Scheid

twoddpcr 1.7.0

Anthony Chiu

tximeta 1.1.18

Michael Love

tximport 1.11.7

Michael Love

TxRegInfra 1.3.6

VJ Carey

TypeInfo 1.49.0

Duncan Temple Lang

Ularcirc 1.1.2

David Humphreys

WARNINGS

UNDO 1.25.0

Niya Wang

unifiedWMWqPCR 1.19.0

Joris Meys

UniProt.ws 2.23.0

Marc Carlson

Uniquorn 2.3.5

'Raik Otto'

universalmotif 1.1.66

Benjamin Jean-Marie Tremblay

uSORT 1.9.1

Hao Chen

WARNINGS

VanillaICE 1.45.0

Robert Scharpf

ERROR

skipped

variancePartition 1.13.6

Gabriel E. Hoffman

VariantAnnotation 1.29.25

Valerie Obenchain

VariantFiltering 1.19.0

Robert Castelo

VariantTools 1.25.1

Michael Lawrence

WARNINGS

vbmp 1.51.0

Nicola Lama

VCFArray 0.99.18

Qian Liu

Vega 1.31.0

Sandro Morganella

VegaMC 3.21.0

Sandro Morganella

vidger 1.3.1

Brandon Monier

viper 1.17.1

Mariano J Alvarez

ERROR

skipped

vsn 3.51.0

Wolfgang Huber

vtpnet 0.23.0

VJ Carey

vulcan 1.5.0

Federico M. Giorgi

wateRmelon 1.27.0

Leo

ERROR

wavClusteR 2.17.1

Federico Comoglio

waveTiling 1.25.0

Kristof De Beuf

weaver 1.49.0

Seth Falcon

WARNINGS

webbioc 1.55.0

Colin A. Smith

widgetTools 1.61.0

Jianhua Zhang

wiggleplotr 1.7.1

Kaur Alasoo

WARNINGS

Wrench 1.1.0

Hector Corrada Bravo

XBSeq 1.15.1

Yuanhang Liu

xcms 3.5.1

Steffen Neumann

XDE 2.29.0

Robert Scharpf

WARNINGS

Xeva 0.99.19

Benjamin Haibe-Kains

ERROR

skipped

XINA 1.1.1

Lang Ho Lee and Sasha A. Singh

xmapbridge 1.41.0

Chris Wirth

xps 1.43.0

Christian Stratowa

XVector 0.23.2

Hervé Pagès

WARNINGS

yamss 1.9.1

Leslie Myint

YAPSA 1.9.1

Daniel Huebschmann

yaqcaffy 1.43.0

Laurent Gatto

yarn 1.9.0

Joseph N Paulson

zFPKM 1.5.1

Ron Ammar

zinbwave 1.5.2

Davide Risso

zlibbioc 1.29.0

Bioconductor Package Maintainer