Package: martini

Version: 1.3.1

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:martini.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings martini_1.3.1.tar.gz

StartedAt: 2019-04-09 01:42:19 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 01:44:20 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 121.2 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: martini.Rcheck

Warnings: 1

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### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:martini.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings martini_1.3.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/martini.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘martini/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘martini’ version ‘1.3.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘martini’ can be installed ... WARNING
Found the following significant warnings:
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:91:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:93:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:100:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:101:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:102:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:103:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:104:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:106:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:107:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:108:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:109:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/CCrossValidation.h:47:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/CCrossValidation.h:48:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:46:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:52:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:53:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:54:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:103:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:104:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:105:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:106:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:107:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:137:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:138:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:139:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:141:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:190:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:191:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:192:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:193:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:34:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:37:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:38:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:39:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:40:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:41:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:42:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:43:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:44:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:45:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:46:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:59:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:62:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:65:12: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:89:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:93:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:94:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:95:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:104:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:105:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:108:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:109:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:111:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CSconesIO.h:30:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
See ‘/home/biocbuild/bbs-3.9-bioc/meat/martini.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 38.5Mb
  sub-directories of 1Mb or more:
    libs  38.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
get_GI_network: no visible binding for global variable ‘gene1’
get_GI_network: no visible binding for global variable ‘gene2’
get_GM_network: no visible binding for global variable ‘gene’
test_cones_modules : <anonymous> : <anonymous>: no visible binding for
  global variable ‘snp’
Undefined global functions or variables:
  gene gene1 gene2 snp
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
get_ppi 0.476  0.016   8.941
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/martini.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL martini
###
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘martini’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128 {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:374:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
../inst/include/martini_RcppExports.h:28:130:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
../inst/include/martini_RcppExports.h:28:130:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, -1>’
RcppExports.cpp:22:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:61:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/RcppCommon.h:29,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
RcppExports.cpp: In function ‘SEXPREC* _martini_run_scones_try(SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:32:9: warning: unused variable ‘nprot’ [-Wunused-variable]
     int nprot = 0;                                                                               \
         ^
RcppExports.cpp:29:1: note: in expansion of macro ‘BEGIN_RCPP’
 BEGIN_RCPP
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/macros/macros.h:36:17: warning: unused variable ‘stop_sym’ [-Wunused-variable]
     static SEXP stop_sym = Rf_install("stop");                                                   \
                 ^
RcppExports.cpp:29:1: note: in expansion of macro ‘BEGIN_RCPP’
 BEGIN_RCPP
 ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from ../inst/include/martini_RcppExports.h:7,
                 from ../inst/include/martini.h:7,
                 from RcppExports.cpp:4:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::SparseMatrix<double, 0, int>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80:   required from ‘struct Eigen::internal::evaluator<Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1390:8:   required from ‘struct Eigen::internal::evaluator<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20:   required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Sparse2Sparse>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<typename DstXprType::Scalar, typename SrcXprType::Scalar>&) [with DstXprType = Eigen::SparseMatrix<double, 0, int>; SrcXprType = Eigen::SparseMatrix<double, 0, int>; Functor = Eigen::internal::assign_op<double, double>; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&) [with Dst = Eigen::SparseMatrix<double, 0, int>; Src = Eigen::SparseMatrix<double, 0, int>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:45:37:   required from ‘Derived& Eigen::SparseMatrixBase<Derived>::operator=(const Derived&) [with Derived = Eigen::SparseMatrix<double, 0, int>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:773:26:   required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:708:13:   required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’
RcppExports.cpp:22:51:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79:   required from ‘class Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
../inst/include/martini_RcppExports.h:38:163:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::internal::redux_evaluator<Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<int, int>; Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Map<const Eigen::Matrix<int, -1, 1>, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits<T>::Scalar = int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36:   required from ‘Eigen::Index Eigen::SparseCompressedBase<Derived>::nonZeros() const [with Derived = Eigen::SparseMatrix<double, 0, int>; Eigen::Index = long int]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:119:26:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenWrap.h:149:39:   required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52:   required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38:   required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix<double, 0, int>; SEXP = SEXPREC*]’
../inst/include/martini_RcppExports.h:38:163:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c evo.cpp -o evo.o
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128 {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:374:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:47:12:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:47:12:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:48:12:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from evo.cpp:6:0:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:91:38: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
        uint64 const&, uint64 const&) throw (CGWASDataException);
                                      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:93:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
        uint64 const&, uint64 const&, uint const&) throw (CGWASDataException);
                                                   ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:100:47: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void encodeHomozygousData(GWASData*) throw (CGWASDataException);
                                               ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:101:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void encodeHeterozygousData(GWASData*) throw (CGWASDataException);
                                                 ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:102:61: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void encodeHeterozygousData(GWASData*,uint const&) throw (CGWASDataException);
                                                             ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:103:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void filterSNPsByMAF(GWASData*,float64 const&) throw (CGWASDataException);
                                                         ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:104:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void filterNonInformativeSNPs(GWASData*) throw (CGWASDataException);
                                                   ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:106:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void filterUniqueSNPs(GWASData*) throw (CGWASDataException);
                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:107:40: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static void createSNPHash(GWASData*) throw (CGWASDataException);
                                        ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:108:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static GWASData removeSamples4MissingData(GWASData const&, uint const&) throw (CGWASDataException);
                                                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CGWASData.h:109:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   static GWASData removeSamples4MissingData(GWASData const&, uint const&, bool const) throw (CGWASDataException);
                                                                                       ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/grid_cv.h:9:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/grid_views.h:8,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:8,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/CCrossValidation.h:47:50: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   VectorXd getTrainingIndices(uint const&) const throw (CCrossValidationException);
                                                  ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/CCrossValidation.h:48:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   VectorXd getTestingIndices(uint const&) const throw (CCrossValidationException);
                                                 ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/grid_cv.h:10:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/grid_views.h:8,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:8,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:46:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void _checkDimensions(uint64*,uint64*) throw (CRegressionException);
                                          ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:52:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void fit() throw (CRegressionException) {};
                      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:53:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void fit(bool const&) throw (CRegressionException) {};
                                 ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:54:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   virtual void fit(VectorXd const&, MatrixXd const&) throw (CRegressionException) {};
                                                      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:103:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit() throw (CRegressionException);
              ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:104:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(bool const&) throw (CRegressionException);
                         ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:105:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(VectorXd const&, MatrixXd const&) throw (CRegressionException);
                                              ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:106:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(VectorXd const&, MatrixXd const&, bool const&) throw (CRegressionException);
                                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:107:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void predict(VectorXd*,MatrixXd const&) throw (CRegressionException);
                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:137:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit() throw (CRegressionException);
              ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:138:25: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(bool const&) throw (CRegressionException);
                         ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:139:46: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(VectorXd const&, MatrixXd const&) throw (CRegressionException);
                                              ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:140:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(VectorXd const&, MatrixXd const&, bool const&) throw (CRegressionException);
                                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:141:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void predict(VectorXd*,MatrixXd const&) throw (CRegressionException);
                                           ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:190:14: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit() throw (CRegressionException);
              ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:191:63: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void fit(VectorXd const&, MatrixXd const&, MatrixXd const&) throw (CRegressionException);
                                                               ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:192:60: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void predict(VectorXd*,MatrixXd const&, MatrixXd const&) throw (CRegressionException);
                                                            ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/regression/CRegression.h:193:59: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
         VectorXd predict(MatrixXd const&,MatrixXd const&) throw (CRegressionException);
                                                           ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/univariate_association.h:8:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/model_selection/grid_cv.h:11,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/grid_views.h:8,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:8,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:34:49: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static void __checkParameters(float64 const &) throw(CChi2Exception);
                                                 ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:37:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 cdf(float64 const &, float64 const &) throw(CChi2Exception);
                                                       ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:38:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 logcdf(float64 const &, float64 const &) throw(CChi2Exception);
                                                          ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:39:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 pdf(float64 const &, float64 const &) throw(CChi2Exception);
                                                       ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:40:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 logpdf(float64 const &, float64 const &) throw(CChi2Exception);
                                                          ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:41:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 sf(float64 const &, float64 const &) throw(CChi2Exception);
                                                      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:42:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 isf(float64 const &, float64 const &) throw(CChi2Exception);
                                                       ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:43:57: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static float64 logsf(float64 const &, float64 const &) throw(CChi2Exception);
                                                         ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:44:82: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static MatrixXd get2DContingencyTable(VectorXd const &, VectorXd const &, bool) throw(CChi2Exception);
                                                                                  ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:45:48: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static double calculateChi2(MatrixXd const &) throw(CChi2Exception);
                                                ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/stats/CChi2.h:46:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
  static double calculateChi2Trend(MatrixXd const &, VectorXd const &) throw(CChi2Exception);
                                                                       ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:14:27:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, -1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1>, -1, -1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:14:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:25:12:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1>, -1, 1, true, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1>, -1, 1, true, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   required from ‘class Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:25:32:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7:   required from ‘class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:32:30:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_round_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_round_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34:   required from ‘class Eigen::ArrayBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_round_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from ‘class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_round_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from ‘class Eigen::CwiseUnaryOp<Eigen::internal::scalar_round_op<double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:32:38:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:   required from ‘class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:87:52:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7:   required from ‘class Eigen::internal::dense_product_base<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2, 7>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7:   required from ‘class Eigen::ProductImpl<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7:   required from ‘class Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:14:0,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:59:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
      throw (CPlinkParserException);
      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:62:6: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
      throw (CPlinkParserException);
      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CPlinkParser.h:65:12: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
            throw (CPlinkParserException);
            ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CSconesIO.h:6:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:15,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:89:22: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void __checkdata() throw (CSconesException);
                      ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:93:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void __gridsearch(VectorXd const&, MatrixXd const&, MatrixXd const&) throw (CSconesException);
                                                                        ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:94:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
         MatrixXd __evaluateConsistency() throw (CSconesException);
                                          ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:95:42: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
         MatrixXd __evaluateInformation() throw (CSconesException);
                                          ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:104:68: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   CScones(VectorXd const&, MatrixXd const&, SparseMatrixXd const&) throw (CSconesException);
                                                                    ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:105:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   CScones(VectorXd const&, MatrixXd const&, SparseMatrixXd const&, MatrixXd const&) throw (CSconesException);
                                                                                     ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:108:92: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   CScones(VectorXd const&, MatrixXd const&, SparseMatrixXd const&, CSconesSettings const&) throw (CSconesException);
                                                                                            ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:109:109: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   CScones(VectorXd const&, MatrixXd const&, SparseMatrixXd const&, MatrixXd const&, CSconesSettings const&) throw (CSconesException);
                                                                                                             ^˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/gwas/CScones.h:111:28: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
   void test_associations() throw (CSconesException);
                            ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/shake.h:15:0,
                 from evo.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/io/CSconesIO.h:30:24: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
             GWASData*) throw (CSconesIOException);
                        ^˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::Matrix<double, -1, 1>; Eigen::Index = long int]’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63:   required from ‘static Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Derived, 3, 0>::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::internal::redux_evaluator<Eigen::Matrix<double, -1, 1> >; Eigen::internal::redux_impl<Func, Derived, 3, 0>::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73:   required from ‘typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Matrix<double, -1, 1>; typename Eigen::internal::traits<T>::Scalar = double]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:34:28:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
                                  ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Functor = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:14:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Functor = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, -1, false>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:14:62:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Functor = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:25:32:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Functor = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>; Src = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<const Eigen::Matrix<double, -1, -1>, -1, 1, true>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:25:32:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>, 2>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, 1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:174:81:   required from ‘class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34:   required from ‘class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>, 0>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7:   required from ‘class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, 1>, 1, 1, false, true>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7:   required from ‘class Eigen::BlockImpl<const Eigen::Matrix<double, -1, 1>, 1, 1, false, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:440:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from evo.cpp:5:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op<double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; SrcXprType = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Functor = Eigen::internal::swap_assign_op<double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op<double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Func = Eigen::internal::swap_assign_op<double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22:   required from ‘void Eigen::DenseBase<Derived>::swap(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Derived = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:965:19:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   enum {
        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20:   required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>; Functor = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31:   required from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false> >; SrcXprType = Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, 1, -1, false>; Src = Eigen::Block<const Eigen::Matrix<double, -1, 1>, 1, 1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43:   required from ‘static void Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op<Scalar, Scalar>&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Lhs = Eigen::PermutationMatrix<-1, -1, int>; Rhs = Eigen::Matrix<double, -1, 1>; int Options = 2; Scalar = double; Eigen::internal::Assignment<DstXprType, Eigen::Product<Lhs, Rhs, Options>, Eigen::internal::assign_op<Scalar, Scalar>, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == DefaultProduct) || (Options == AliasFreeProduct))>::type>::SrcXprType = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49:   required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Func = Eigen::internal::assign_op<double, double>; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing<Src>::value), void*>::type = void*]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18:   required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>]’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28:   required from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Product<Eigen::PermutationMatrix<-1, -1, int>, Eigen::Matrix<double, -1, 1>, 2>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/utils/CMatrixHelper.h:92:35:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -DAS_GINLIB -DAS_RGINLIB -fopenmp -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c run_scones.cpp -o run_scones.o
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128 {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:392:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:374:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half {aka __vector(4) float}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<float, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<float>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<float>::type {aka __vector(4) float}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7:   required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, 4, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:   required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7:   required from ‘class Eigen::Quaternion<double>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:31,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required from ‘class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required from ‘class Eigen::SparseMatrix<double, 0, int>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<int, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required from ‘class Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required from ‘class Eigen::Transpose<Eigen::Matrix<int, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<int, -1, -1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:367:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/feature_selector.h:20:11:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}’ [-Wignored-attributes]
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^˜˜˜
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Core:434:0,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
                 from run_scones.cpp:7:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>’:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required from ‘class Eigen::Matrix<double, -1, 1>’
/home/biocbuild/bbs-3.9-bioc/R/library/Rgin/include/gin/feature_selection/feature_selector.h:20:11:   required from here
/home/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits<double>::type {aka __vector(2) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o martini.so RcppExports.o evo.o run_scones.o /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib//libgin.a /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib//libmaxflow.a /home/biocbuild/bbs-3.9-bioc/R/library/Rgin/usrlib//libcephes.a -lz -pthread -fopenmp -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-martini/00new/martini/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (martini)

R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(martini)
> library(igraph)

Attaching package: 'igraph'

The following object is masked from 'package:testthat':

    compare

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

> 
> test_check("martini")
Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.002531 sec

Searching ConES with eta = 3 and lambda = 2.5

Finished in 6.9e-05 sec

Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.001249 sec

Searching ConES with eta = 1 and lambda = 2

Finished in 5.8e-05 sec

Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.016944 sec

Searching ConES with eta = 1e-06 and lambda = 1e-07

Finished in 6.8e-05 sec

Grid of consistency scores (etas x lambdas):
     99   99   99   99   99   99   99   99   99   99
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
Selected parameters:
eta = 99 
lambda = 99 
Grid of consistency scores (etas x lambdas):
                       99 52.7071225004667 28.0610178008001 14.9395505324702
99                   -Inf             -Inf             -Inf             -Inf
52.7071225004667 90.00000         90.00000         90.00000         90.00000
28.0610178008001 90.00000         90.00000         90.00000         90.00000
14.9395505324702 90.00000         90.00000         90.00000         90.00000
7.95374464663453 90.00000         90.00000         90.00000         90.00000
4.23453528714745 90.00000         90.00000         90.00000         90.00000
2.2544461627498  90.00000         90.00000         90.00000         90.00000
1.20025626334102 88.69231         88.69231         88.69231         88.69231
0.63901064549361     -Inf             -Inf             -Inf             -Inf
0.34020618556701     -Inf             -Inf             -Inf             -Inf
                 7.95374464663453 4.23453528714745 2.2544461627498
99                           -Inf             -Inf            -Inf
52.7071225004667         90.00000         90.00000        90.00000
28.0610178008001         90.00000         90.00000        90.00000
14.9395505324702         90.00000         90.00000        90.00000
7.95374464663453         90.00000         90.00000        90.00000
4.23453528714745         90.00000         90.00000        90.00000
2.2544461627498          90.00000         90.00000        90.00000
1.20025626334102         88.69231         88.69231        88.69231
0.63901064549361             -Inf             -Inf            -Inf
0.34020618556701             -Inf             -Inf            -Inf
                 1.20025626334102 0.63901064549361 0.34020618556701
99                           -Inf             -Inf             -Inf
52.7071225004667         90.00000         90.00000         90.00000
28.0610178008001         90.00000         90.00000         90.00000
14.9395505324702         90.00000         90.00000         90.00000
7.95374464663453         90.00000         90.00000         90.00000
4.23453528714745         90.00000         90.00000         90.00000
2.2544461627498          90.00000         90.00000         90.00000
1.20025626334102         88.69231         88.69231         88.69231
0.63901064549361             -Inf             -Inf             -Inf
0.34020618556701             -Inf             -Inf             -Inf
Selected parameters:
eta = 52.70712 
lambda = 99 
Grid of consistency scores (etas x lambdas):
     99   99   99   99   99   99   99   99   99   99
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
Selected parameters:
eta = 99 
lambda = 99 
Grid of consistency scores (etas x lambdas):
     0
0 -Inf
Selected parameters:
eta = 0 
lambda = 0 
Grid of consistency scores (etas x lambdas):
                         0 0.222222222222222 0.444444444444445
0                     -Inf              -Inf              -Inf
0.222222222222222     -Inf              -Inf              -Inf
0.444444444444445     -Inf              -Inf              -Inf
0.666666666666667     -Inf              -Inf              -Inf
0.888888888888889     -Inf              -Inf              -Inf
1.11111111111111  88.69231          88.69231          88.69231
1.33333333333333  88.69231          88.69231          88.69231
1.55555555555556  88.69231          88.69231          88.69231
1.77777777777778  88.69231          88.69231          88.69231
2                 88.69231          88.69231          88.69231
                  0.666666666666667 0.888888888888889 1.11111111111111
0                              -Inf              -Inf             -Inf
0.222222222222222              -Inf              -Inf             -Inf
0.444444444444445              -Inf              -Inf             -Inf
0.666666666666667              -Inf              -Inf             -Inf
0.888888888888889              -Inf              -Inf             -Inf
1.11111111111111           88.69231          88.69231         88.69231
1.33333333333333           88.69231          88.69231         88.69231
1.55555555555556           88.69231          88.69231         88.69231
1.77777777777778           88.69231          88.69231         88.69231
2                          88.69231          88.69231         88.69231
                  1.33333333333333 1.55555555555556 1.77777777777778        2
0                             -Inf             -Inf             -Inf     -Inf
0.222222222222222             -Inf             -Inf             -Inf     -Inf
0.444444444444445             -Inf             -Inf             -Inf     -Inf
0.666666666666667             -Inf             -Inf             -Inf     -Inf
0.888888888888889             -Inf             -Inf             -Inf     -Inf
1.11111111111111          88.69231         88.69231         88.69231 88.69231
1.33333333333333          88.69231         88.69231         88.69231 88.69231
1.55555555555556          88.69231         88.69231         88.69231 88.69231
1.77777777777778          88.69231         88.69231         88.69231 88.69231
2                         88.69231         88.69231         88.69231 88.69231
Selected parameters:
eta = 1.111111 
lambda = 0 
Grid of bic scores (etas x lambdas):
                          0 0.222222222222222 0.444444444444445
0                      -Inf              -Inf              -Inf
0.222222222222222      -Inf              -Inf              -Inf
0.444444444444445      -Inf              -Inf              -Inf
0.666666666666667      -Inf              -Inf              -Inf
0.888888888888889      -Inf              -Inf              -Inf
1.11111111111111  -1395.887         -1395.887         -1395.887
1.33333333333333  -1395.887         -1395.887         -1395.887
1.55555555555556  -1395.887         -1395.887         -1395.887
1.77777777777778  -1395.887         -1395.887         -1395.887
2                 -1395.887         -1395.887         -1395.887
                  0.666666666666667 0.888888888888889 1.11111111111111
0                              -Inf              -Inf             -Inf
0.222222222222222              -Inf              -Inf             -Inf
0.444444444444445              -Inf              -Inf             -Inf
0.666666666666667              -Inf              -Inf             -Inf
0.888888888888889              -Inf              -Inf             -Inf
1.11111111111111          -1395.887         -1395.887        -1395.887
1.33333333333333          -1395.887         -1395.887        -1395.887
1.55555555555556          -1395.887         -1395.887        -1395.887
1.77777777777778          -1395.887         -1395.887        -1395.887
2                         -1395.887         -1395.887        -1395.887
                  1.33333333333333 1.55555555555556 1.77777777777778         2
0                             -Inf             -Inf             -Inf      -Inf
0.222222222222222             -Inf             -Inf             -Inf      -Inf
0.444444444444445             -Inf             -Inf             -Inf      -Inf
0.666666666666667             -Inf             -Inf             -Inf      -Inf
0.888888888888889             -Inf             -Inf             -Inf      -Inf
1.11111111111111         -1395.887        -1395.887        -1395.887 -1395.887
1.33333333333333         -1395.887        -1395.887        -1395.887 -1395.887
1.55555555555556         -1395.887        -1395.887        -1395.887 -1395.887
1.77777777777778         -1395.887        -1395.887        -1395.887 -1395.887
2                        -1395.887        -1395.887        -1395.887 -1395.887
Selected parameters:
eta = 1.111111 
lambda = 0 
Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.018694 sec

Searching ConES with eta = 1e-06 and lambda = 1e-07

Finished in 6.1e-05 sec

eta = 1e-06 
lambda = 1e-07 
Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.001175 sec

Searching ConES with eta = 1 and lambda = 2

Finished in 4.7e-05 sec

eta = 1 
lambda = 2 
Computing univariate association.
Selecting the best hyperparameters...
Running models.
Finding best model.
Finished in 0.015254 sec

Searching ConES with eta = 1e-06 and lambda = 1e-07

Finished in 6.4e-05 sec

eta = 1e-06 
lambda = 1e-07 
Grid of consistency scores (etas x lambdas):
     99   99   99   99   99   99   99   99   99   99
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
Selected parameters:
eta = 99 
lambda = 99 
Grid of consistency scores (etas x lambdas):
     99   99   99   99   99   99   99   99   99   99
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
99 -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf -Inf
Selected parameters:
eta = 99 
lambda = 99 
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 234 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
 19.926   0.545  42.788 

name	user	system	elapsed
check_installed	0.000	0.000	0.001
encode_gwas	0.010	0.004	0.020
get_GI_network	0.076	0.000	0.094
get_GM_network	0.025	0.000	0.024
get_GS_network	0.01	0.00	0.01
get_evo_settings	0.001	0.000	0.001
get_ppi	0.476	0.016	8.941
get_snp_modules	0.251	0.008	0.259
is_coherent	0.003	0.000	0.004
ldweight_edges	0.069	0.000	0.069
minigwas	0.021	0.004	0.025
minippi	0.002	0.000	0.002
minisnpMapping	0.002	0.000	0.003
parse_scones_settings	0.002	0.000	0.002
scones	0.043	0.000	0.044
scones.cv	0.249	0.004	0.254
search_cones	0.109	0.008	0.145
simulate_causal_snps	0.050	0.000	0.051
simulate_phenotype	0.044	0.000	0.045
subnet	0.030	0.000	0.031
subvert	0.03	0.00	0.03
test_cones_modules	0.213	0.000	0.212