Package: CAMTHC

Version: 1.1.3

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:CAMTHC.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings CAMTHC_1.1.3.tar.gz

StartedAt: 2019-04-08 23:11:34 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 23:15:06 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 212.0 seconds

RetCode: 0

Status:  OK

CheckDir: CAMTHC.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:CAMTHC.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings CAMTHC_1.1.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/CAMTHC.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CAMTHC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CAMTHC’ version ‘1.1.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CAMTHC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
MGsforA      24.361  0.020  24.473
reselectMG   13.795  0.020  13.818
CAMASest     13.165  0.008  13.165
PCAmat       13.030  0.024  13.044
CAM          12.831  0.036  12.860
CAMMGCluster 12.619  0.040  12.651
AS-accessor  12.327  0.124  12.445
CAMPrep      12.086  0.024  12.111
redoASest    11.910  0.028  11.931
XWProj        6.547  0.016   6.560
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL CAMTHC
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘CAMTHC’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CAMTHC)

R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(CAMTHC)
> 
> test_check("CAMTHC")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 5 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.175   0.194   3.394 

name	user	system	elapsed
AS-accessor	12.327	0.124	12.445
AfromMarkers	0.545	0.020	0.565
CAM	12.831	0.036	12.860
CAMASest	13.165	0.008	13.165
CAMMGCluster	12.619	0.040	12.651
CAMPrep	12.086	0.024	12.111
MDL	0	0	0
MGsforA	24.361	0.020	24.473
MGstatistic	0.339	0.023	0.363
PCAmat	13.030	0.024	13.044
XWProj	6.547	0.016	6.560
cornerSort	0.081	0.012	0.102
redoASest	11.910	0.028	11.931
reselectMG	13.795	0.020	13.818
sffsHull	0.039	0.000	0.039
simplexplot	0.677	0.024	0.701