Package: clusterExperiment

Version: 2.3.1

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL clusterExperiment

StartedAt: 2019-04-08 18:54:10 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:55:41 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 90.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL clusterExperiment
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘clusterExperiment’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c search_pairs.cpp -o search_pairs.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c subsampleLoop.cpp -o subsampleLoop.o
subsampleLoop.cpp: In function ‘Rcpp::IntegerMatrix subsampleLoop(Rcpp::List, int)’:
subsampleLoop.cpp:89:32: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
     LogicalVector clusterj = j <= indexClusterEnds & j >= indexClusterStarts;
                              ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
subsampleLoop.cpp:90:32: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
     LogicalVector clusterk = k <= indexClusterEnds & k >= indexClusterStarts;
                              ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
subsampleLoop.cpp:122:25: warning: suggest parentheses around comparison in operand of ‘|’ [-Wparentheses]
    if((it->second).first>0 | (it->second).second==NA_INTEGER){
       ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o clusterExperiment.so RcppExports.o search_pairs.o subsampleLoop.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.9-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-clusterExperiment/00new/clusterExperiment/libs
** R
** data
** byte-compile and prepare package for lazy loading
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
Found more than one class "Annotated" in cache; using the first, from namespace 'S4Vectors'
Also defined by ‘RNeXML’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clusterExperiment)