| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:32:46 -0400 (Tue, 09 Apr 2019).
| Package 188/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| bsseq 1.19.3 Kasper Daniel Hansen
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: bsseq |
| Version: 1.19.3 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL bsseq |
| StartedAt: 2019-04-08 18:32:45 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 18:35:57 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 191.2 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL bsseq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘bsseq’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I/usr/local/include -fpic -g -O2 -Wall -c check_M_and_Cov.cpp -o check_M_and_Cov.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I/usr/local/include -fpic -g -O2 -Wall -c init.cpp -o init.o g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rhdf5lib/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o Error: 'pkgconfig' is not an exported object from 'namespace:beachmat' Execution halted g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o bsseq.so check_M_and_Cov.o init.o utils.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR Error: 'pkgconfig' is not an exported object from 'namespace:beachmat' Execution halted installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-bsseq/00new/bsseq/libs ** R ** data *** moving datasets to lazyload DB Registered S3 method overwritten by 'R.oo': method from throw.default R.methodsS3 ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bsseq)