Sergio Picart-Armada
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/diffuStats |
| Branch: master |
| Last Commit: 11cb135 |
| Last Changed Date: 2019-03-28 11:51:37 -0400 (Thu, 28 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:48:24 -0400 (Tue, 09 Apr 2019).
| Package 431/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| diffuStats 1.3.1 Sergio Picart-Armada
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: diffuStats |
| Version: 1.3.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL diffuStats |
| StartedAt: 2019-04-08 18:08:49 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 18:09:33 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 44.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL diffuStats
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘diffuStats’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -Wall -c diffuse_parallel.cpp -o diffuse_parallel.o
diffuse_parallel.cpp: In function ‘arma::sp_mat convertSparse(Rcpp::S4)’:
diffuse_parallel.cpp:28:84: warning: ‘static eT* arma::memory::acquire_chunked(arma::uword) [with eT = double; arma::uword = unsigned int]’ is deprecated [-Wdeprecated-declarations]
arma::access::rw(res.values) = arma::memory::acquire_chunked<double>(x.size() + 1);
^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo:355:0,
from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from diffuse_parallel.cpp:1:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117:1: note: declared here
memory::acquire_chunked(const uword n_elem)
^˜˜˜˜˜
diffuse_parallel.cpp:32:94: warning: ‘static eT* arma::memory::acquire_chunked(arma::uword) [with eT = unsigned int; arma::uword = unsigned int]’ is deprecated [-Wdeprecated-declarations]
arma::access::rw(res.row_indices) = arma::memory::acquire_chunked<arma::uword>(i.size() + 1);
^
In file included from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo:355:0,
from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
from /home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
from diffuse_parallel.cpp:1:
/home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117:1: note: declared here
memory::acquire_chunked(const uword n_elem)
^˜˜˜˜˜
diffuse_parallel.cpp: In function ‘arma::sp_mat sparsify2(const mat&, int, const sp_mat&)’:
diffuse_parallel.cpp:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i = 0; i < pos.size(); ++i) {
˜˜^˜˜˜˜˜˜˜˜˜˜˜
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/RcppParallel/include" -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o diffuStats.so RcppExports.o diffuse_parallel.o init.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-diffuStats/00new/diffuStats/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (diffuStats)