Package: derfinderHelper

Version: 1.17.1

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:derfinderHelper.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings derfinderHelper_1.17.1.tar.gz

StartedAt: 2019-04-08 23:59:53 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-09 00:01:18 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 85.0 seconds

RetCode: 1

Status:  ERROR

CheckDir: derfinderHelper.Rcheck

Warnings: NA

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:derfinderHelper.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings derfinderHelper_1.17.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/derfinderHelper.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘derfinderHelper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘derfinderHelper’ version ‘1.17.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘derfinderHelper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 ERROR
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
  ── 1. Failure: Correct output (@test_fstats.apply.R#45)  ───────────────────────
  `x` not identical to `expected`.
  Lengths differ: 996 is not 991
  
  ── 2. Failure: Correct output (@test_fstats.apply.R#46)  ───────────────────────
  `x` not identical to `expected`.
  Lengths differ: 996 is not 991
  
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 5 SKIPPED: 0 FAILED: 2
  1. Failure: Correct output (@test_fstats.apply.R#45) 
  2. Failure: Correct output (@test_fstats.apply.R#46) 
  
  Error: testthat unit tests failed
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/derfinderHelper.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL derfinderHelper
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘derfinderHelper’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (derfinderHelper)

R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> ## Disable the tests if the system variable 'R_DISABLE_TESTS' is set to TRUE
> 
> flag <- as.logical(Sys.getenv('R_DISABLE_TESTS'))
> if(is.na(flag) | flag == FALSE) {
+     library('testthat')
+     test_check('derfinderHelper')
+ }
Loading required package: derfinderHelper
── 1. Failure: Correct output (@test_fstats.apply.R#45)  ───────────────────────
`x` not identical to `expected`.
Lengths differ: 996 is not 991

── 2. Failure: Correct output (@test_fstats.apply.R#46)  ───────────────────────
`x` not identical to `expected`.
Lengths differ: 996 is not 991

══ testthat results  ═══════════════════════════════════════════════════════════
OK: 5 SKIPPED: 0 FAILED: 2
1. Failure: Correct output (@test_fstats.apply.R#45) 
2. Failure: Correct output (@test_fstats.apply.R#46) 

Error: testthat unit tests failed
Execution halted

name	user	system	elapsed
fstats.apply	0.137	0.008	0.146