Package: PrInCE

Version: 0.99.13

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PrInCE_0.99.13.tar.gz

StartedAt: 2019-04-09 02:49:09 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 02:52:28 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 198.4 seconds

RetCode: 0

Status:  OK

CheckDir: PrInCE.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PrInCE_0.99.13.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/PrInCE.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrInCE/DESCRIPTION’ ... OK
* this is package ‘PrInCE’ version ‘0.99.13’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrInCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
predict_interactions 6.942  0.060   7.013
calculate_precision  5.252  0.056   5.308
predict_ensemble     5.018  0.072   5.090
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL PrInCE
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘PrInCE’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: PrInCE
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Registered S3 method overwritten by 'xts':
  method     from
  as.zoo.xts zoo 
Registered S3 method overwritten by 'quantmod':
  method            from
  as.zoo.data.frame zoo 
Registered S3 methods overwritten by 'forecast':
  method             from    
  fitted.fracdiff    fracdiff
  residuals.fracdiff fracdiff
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PrInCE)

name	user	system	elapsed
PrInCE	4.858	0.060	4.919
adjacency_matrix_from_data_frame	0.002	0.000	0.002
adjacency_matrix_from_list	1.166	0.048	1.215
build_gaussians	0.690	0.008	0.699
calculate_precision	5.252	0.056	5.308
check_gaussians	0.152	0.036	0.189
choose_gaussians	0.247	0.000	0.247
clean_profile	0.083	0.000	0.083
clean_profiles	0.073	0.000	0.073
co_apex	0.157	0.024	0.181
detect_complexes	0.115	0.008	0.123
filter_profiles	0.306	0.000	0.306
fit_curve	0.141	0.004	0.145
fit_gaussians	0.143	0.000	0.143
impute_neighbors	0.039	0.004	0.042
is_unweighted	1.096	0.008	1.104
is_weighted	1.251	0.008	1.259
make_initial_conditions	0.055	0.000	0.054
make_labels	1.234	0.008	1.243
match_matrix_dimensions	2.102	0.004	2.106
predict_ensemble	5.018	0.072	5.090
predict_interactions	6.942	0.060	7.013
threshold_precision	4.735	0.023	4.760