Package: SEPA

Version: 1.13.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SEPA

StartedAt: 2019-04-08 20:42:34 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:45:07 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 152.9 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SEPA
###
##############################################################################
##############################################################################


* checking for file ‘SEPA/DESCRIPTION’ ... OK
* preparing ‘SEPA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SEPA.Rnw’ using knitr

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 222 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 3 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 1272 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 561 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 858 nontrivial nodes
		 parameters: 
			 test statistic: fisher

Building most specific GOs .....
	( 2360 GO terms found. )

Build GO DAG topology ..........
	( 5693 GO terms and 12953 relations. )

Annotating nodes ...............
	( 467 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 1083 nontrivial nodes
		 parameters: 
			 test statistic: fisher
Error: processing vignette 'SEPA.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'SEPA.tex' failed.
LaTeX errors:
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
! Dimension too large.
\fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa 
                                                  \fb@putboxa #1\fb@afterfra...
l.1949 ...contrasts argument ignored}}\end{kframe}
                                                  
--- failed re-building ‘SEPA.Rnw’

SUMMARY: processing the following file failed:
  ‘SEPA.Rnw’

Error: Vignette re-building failed.
Execution halted