Package: HilbertCurve

Version: 1.13.2

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz

StartedAt: 2019-04-09 01:13:43 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 01:16:03 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 140.4 seconds

RetCode: 0

Status:  OK

CheckDir: HilbertCurve.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings HilbertCurve_1.13.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.13.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        13.781  0.172  13.953
hc_layer-GenomicHilbertCurve-method 10.292  0.096  10.396
GenomicHilbertCurve                  9.085  0.036  10.018
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL HilbertCurve
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 8 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  4.409   0.203   4.602 

name	user	system	elapsed
GenomicHilbertCurve-class	0.001	0.000	0.000
GenomicHilbertCurve	9.085	0.036	10.018
HilbertCurve-class	0	0	0
HilbertCurve	0.465	0.015	0.669
default_overlay	0	0	0
hc_centered_text-HilbertCurve-method	0.092	0.000	0.092
hc_layer-GenomicHilbertCurve-method	10.292	0.096	10.396
hc_layer-HilbertCurve-method	13.781	0.172	13.953
hc_layer-dispatch	0	0	0
hc_level-HilbertCurve-method	0.024	0.000	0.024
hc_map-GenomicHilbertCurve-method	2.830	0.012	2.844
hc_normal_points-HilbertCurve-method	0	0	0
hc_offset-HilbertCurve-method	0.019	0.000	0.019
hc_png-HilbertCurve-method	4.229	0.052	4.290
hc_points-GenomicHilbertCurve-method	0.462	0.008	0.469
hc_points-HilbertCurve-method	0.800	0.004	0.805
hc_points-dispatch	0	0	0
hc_polygon-GenomicHilbertCurve-method	0.612	0.004	0.615
hc_polygon-HilbertCurve-method	0.144	0.000	0.144
hc_polygon-dispatch	0	0	0
hc_rect-GenomicHilbertCurve-method	0.387	0.004	0.392
hc_rect-HilbertCurve-method	0.105	0.000	0.105
hc_rect-dispatch	0.000	0.000	0.001
hc_segmented_points-HilbertCurve-method	0	0	0
hc_segments-GenomicHilbertCurve-method	0.689	0.000	0.689
hc_segments-HilbertCurve-method	0.082	0.000	0.082
hc_segments-dispatch	0	0	0
hc_text-GenomicHilbertCurve-method	0.186	0.000	0.185
hc_text-HilbertCurve-method	0.095	0.000	0.095
hc_text-dispatch	0	0	0
show-HilbertCurve-method	0.006	0.000	0.006
unzoom-HilbertCurve-method	0.006	0.000	0.006
zoom-HilbertCurve-method	0.006	0.000	0.005