Charles E. Determan Jr.
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OmicsMarkeR |
| Branch: master |
| Last Commit: fd96c03 |
| Last Changed Date: 2018-10-30 11:54:34 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:42:06 -0400 (Tue, 09 Apr 2019).
| Package 1110/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmicsMarkeR 1.15.0 Charles E. Determan Jr.
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: OmicsMarkeR |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.15.0.tar.gz |
| StartedAt: 2019-04-09 02:27:17 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 02:30:56 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 219.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmicsMarkeR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/OmicsMarkeR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmicsMarkeR/DESCRIPTION’ ... OK
* this is package ‘OmicsMarkeR’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmicsMarkeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
perm.class 13.925 0.012 13.938
predictNewClasses 11.824 0.012 11.853
feature.table 10.810 0.051 10.877
fs.stability 10.758 0.024 10.791
perm.features 10.531 0.004 10.536
performance.metrics 10.484 0.000 10.486
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
OmicsMarkeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL OmicsMarkeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘OmicsMarkeR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicsMarkeR)
OmicsMarkeR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsMarkeR)
>
> test_check("OmicsMarkeR")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 100 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
65.132 0.166 65.298
OmicsMarkeR.Rcheck/OmicsMarkeR-Ex.timings
| name | user | system | elapsed | |
| RPT | 0.005 | 0.000 | 0.017 | |
| aggregation | 0.007 | 0.000 | 0.007 | |
| canberra | 0.001 | 0.000 | 0.001 | |
| canberra_stability | 0.001 | 0.000 | 0.001 | |
| create.corr.matrix | 0.005 | 0.000 | 0.005 | |
| create.discr.matrix | 0.004 | 0.000 | 0.004 | |
| create.random.matrix | 0.004 | 0.000 | 0.004 | |
| denovo.grid | 0.009 | 0.000 | 0.009 | |
| feature.table | 10.810 | 0.051 | 10.877 | |
| fit.only.model | 2.948 | 0.008 | 2.957 | |
| fs.ensembl.stability | 0 | 0 | 0 | |
| fs.stability | 10.758 | 0.024 | 10.791 | |
| jaccard | 0.000 | 0.000 | 0.001 | |
| kuncheva | 0.001 | 0.000 | 0.000 | |
| modelList | 0.001 | 0.000 | 0.001 | |
| ochiai | 0 | 0 | 0 | |
| pairwise.model.stability | 0.008 | 0.000 | 0.008 | |
| pairwise.stability | 0.006 | 0.000 | 0.006 | |
| params | 0.002 | 0.000 | 0.002 | |
| performance.metrics | 10.484 | 0.000 | 10.486 | |
| perm.class | 13.925 | 0.012 | 13.938 | |
| perm.features | 10.531 | 0.004 | 10.536 | |
| pof | 0.001 | 0.000 | 0.001 | |
| predictNewClasses | 11.824 | 0.012 | 11.853 | |
| sorensen | 0.001 | 0.000 | 0.001 | |
| spearman | 0.001 | 0.000 | 0.001 | |
| svmrfeFeatureRanking | 0.105 | 0.000 | 0.105 | |
| svmrfeFeatureRankingForMulticlass | 0.176 | 0.000 | 0.176 | |