Package: CellScore

Version: 1.3.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings CellScore_1.3.0.tar.gz

StartedAt: 2019-04-08 23:17:47 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 23:22:54 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 307.2 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings CellScore_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/CellScore.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                41.603  0.975  42.630
heatmapOnOffMarkers            30.989  0.447  31.488
RugplotCellScore               30.034  0.156  30.210
extractTransitions             28.729  0.296  29.269
ScatterplotCellScoreComponents 25.131  0.192  25.329
PlotCosineSimHeatmap           23.856  0.100  23.970
BoxplotCellScore               20.387  0.528  20.924
CellScore                      18.064  0.220  18.338
CosineSimScore                 16.155  0.276  16.432
PcaStandards                   15.730  0.232  15.964
BarplotOnOff                   10.686  0.719  11.849
OnOff                           7.788  0.188   7.977
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL CellScore
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘CellScore’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	10.686	0.719	11.849
BoxplotCellScore	20.387	0.528	20.924
CellScore	18.064	0.220	18.338
CellScoreReport	41.603	0.975	42.630
CosineSimScore	16.155	0.276	16.432
OnOff	7.788	0.188	7.977
PcaStandards	15.730	0.232	15.964
PlotCosineSimHeatmap	23.856	0.100	23.970
RugplotCellScore	30.034	0.156	30.210
ScatterplotCellScoreComponents	25.131	0.192	25.329
extractTransitions	28.729	0.296	29.269
heatmapOnOffMarkers	30.989	0.447	31.488
rugplotDonorTargetTest	0.001	0.000	0.000
scatterplotDonorTargetTest	0.000	0.000	0.001