triplex 1.23.0
Jiri Hon
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/triplex |
| Branch: master |
| Last Commit: 3bce49e |
| Last Changed Date: 2018-10-30 11:54:31 -0400 (Tue, 30 Oct 2018) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data triplex
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* checking for file ‘triplex/DESCRIPTION’ ... OK
* preparing ‘triplex’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘triplex.Rnw’ using Sweave
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: XVector
Loading required package: Biostrings
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
NOTICE: There was no triplexes found with the given options.
TIP: Try to modify search options (p_value, min_score, etc.),
for details see ?triplex.search.
Warning in triplex.search(seq, iso_pen = 2) :
Default penalization options were changed. You should consider recalculation
of P-value constants (mu, lambda, rn). For details see vignette.
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: BSgenome
Loading required package: biomaRt
Loading required package: grid
Error: processing vignette 'triplex.Rnw' failed with diagnostics:
chunk 30
Error in getBM(c("ensembl_gene_id", "ensembl_transcript_id", "ensembl_exon_id", :
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1.
Please report this on the support site at http://support.bioconductor.org
--- failed re-building ‘triplex.Rnw’
SUMMARY: processing the following file failed:
‘triplex.Rnw’
Error: Vignette re-building failed.
Execution halted