KEGGgraph 1.43.3
Jitao David Zhang
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/KEGGgraph |
| Branch: master |
| Last Commit: b40b1f9 |
| Last Changed Date: 2019-02-11 09:53:00 -0400 (Mon, 11 Feb 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data KEGGgraph
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* checking for file ‘KEGGgraph/DESCRIPTION’ ... OK
* preparing ‘KEGGgraph’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘KEGGgraph.Rnw’ using Sweave
Attaching package: ‘KEGGgraph’
The following object is masked from ‘package:graphics’:
plot
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Loading required package: grid
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:Rgraphviz’:
from, to
The following object is masked from ‘package:base’:
expand.grid
Error: processing vignette 'KEGGgraph.Rnw' failed with diagnostics:
chunk 16 (label = bcc)
Error in .Call("BGL_brandes_betweenness_centrality", as.integer(nv), as.integer(ne), :
"BGL_brandes_betweenness_centrality" not available for .Call() for package "RBGL"
--- failed re-building ‘KEGGgraph.Rnw’
--- re-building ‘KEGGgraphApp.Rnw’ using Sweave
Loading required package: SPIA
--- finished re-building ‘KEGGgraphApp.Rnw’
SUMMARY: processing the following file failed:
‘KEGGgraph.Rnw’
Error: Vignette re-building failed.
Execution halted