BioC 2.12: Build/check report for pelham

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Package STATUS - Package status is indicated by one of the following glyphs:
- TIMEOUT	BUILD, CHECK or BUILD BIN of package took more than 40 minutes
- ERROR	BUILD, CHECK or BUILD BIN of package returned an error
- WARNINGS	CHECK of package produced warnings
- OK	BUILD, CHECK or BUILD BIN of package was OK
- skipped	CHECK or BUILD BIN of package was skipped because the BUILD step failed (or because something bad happened with the Build System itself)
Click on any glyph in the report below to see the status details (command output).

SUMMARY

OS / Arch

BUILD

CHECK

BUILD BIN

george2

Linux (Ubuntu 12.04.1 LTS) / x86_64

652

603

moscato2

Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64

621

585

620

petty

Mac OS X Leopard (10.5.8) / i386

645

559

645

[pelham]

Mac OS X Snow Leopard (10.6.8) / x86_64

640

584

639

A [A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

a4 1.7.1

Tobias Verbeke , Willem Ligtenberg

a4Base 1.7.1

Tobias Verbeke , Willem Ligtenberg

WARNINGS

a4Classif 1.7.0

Tobias Verbeke , Willem Ligtenberg

a4Core 1.7.0

Tobias Verbeke , Willem Ligtenberg

a4Preproc 1.7.0

Tobias Verbeke , Willem Ligtenberg

a4Reporting 1.7.0

Tobias Verbeke , Willem Ligtenberg

ABarray 1.27.0

Yongming Andrew Sun

aCGH 1.37.0

Peter Dimitrov

ACME 2.15.0

Sean Davis

ADaCGH2 1.9.0

Ramon Diaz-Uriarte

adSplit 1.29.0

Claudio Lottaz

affxparser 1.31.4

Kasper Daniel Hansen

WARNINGS

affy 1.37.4

Rafael A. Irizarry

affycomp 1.35.0

Rafael A. Irizarry

AffyCompatible 1.19.2

Martin Morgan

WARNINGS

affyContam 1.17.0

V. Carey

affycoretools 1.31.4

James W. MacDonald

WARNINGS

AffyExpress 1.25.0

Xuejun Arthur Li

affyILM 1.11.0

Myriam Kroll and Fabrice Berger

affyio 1.27.1

Benjamin Milo Bolstad

affylmGUI 1.33.1

Keith Satterley

affyPara 1.19.1

Markus Schmidberger

ERROR

skipped

affypdnn 1.33.1

Laurent Gautier

affyPLM 1.35.0

Ben Bolstad

affyQCReport 1.37.0

Craig Parman

AffyRNADegradation 1.5.2

Mario Fasold

AffyTiling 1.17.1

Charles G. Danko

AGDEX 1.7.0

Cuilan lani Gao

Agi4x44PreProcess 1.19.0

Pedro Lopez-Romero

agilp 3.1.0

Benny Chain

AgiMicroRna 2.9.0

Pedro Lopez-Romero

altcdfenvs 2.21.0

Laurent Gautier

annaffy 1.31.1

Colin A. Smith

annmap 1.1.1

Tim Yates

annotate 1.37.4

Bioconductor Package Maintainer

AnnotationDbi 1.21.16

Bioconductor Package Maintainer

AnnotationForge 1.1.10

Bioconductor Package Maintainer

AnnotationFuncs 1.9.0

Stefan McKinnon Edwards

AnnotationHub 0.99.38

Marc Carlson

ERROR

skipped

annotationTools 1.33.0

Alexandre Kuhn

anota 1.7.0

Ola Larsson

apComplex 2.25.0

Denise Scholtens

aroma.light 1.29.0

Henrik Bengtsson

WARNINGS

ArrayExpress 1.19.1

Ibrahim Emam

ArrayExpressHTS 1.9.2

Angela Goncalves , Andrew Tikhonov

arrayMvout 1.17.0

V. Carey

arrayQuality 1.37.0

Agnes Paquet

arrayQualityMetrics 3.15.0

Audrey Kauffmann

ArrayTools 1.19.0

Arthur Li

ARRmNormalization 0.99.1

Jean-Philippe Fortin

ASEB 1.3.0

Likun Wang

attract 1.11.1

Jessica Mar

B  A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BAC 1.19.0

Raphael Gottardo

BaseSpaceR 0.99.4

Adrian Alexa

BayesPeak 1.11.0

Jonathan Cairns

baySeq 1.13.2

Thomas J. Hardcastle

BCRANK 1.21.0

Adam Ameur

beadarray 2.9.3

Mark Dunning

beadarraySNP 1.25.0

Jan Oosting

BeadDataPackR 1.11.0

Mike Smith

betr 1.15.0

Martin Aryee

bgafun 1.21.0

Iain Wallace

BGmix 1.19.0

Alex Lewin

bgx 1.23.0

Ernest Turro

WARNINGS

BHC 1.11.0

Rich Savage

BicARE 1.17.0

Pierre Gestraud

bigmemoryExtras 1.1.7

Peter M. Haverty

Biobase 2.19.3

Bioconductor Package Maintainer

BiocCaseStudies 1.21.0

Bioconductor Package Maintainer

ERROR

BiocGenerics 0.5.6

Bioconductor Package Maintainer

WARNINGS

biocGraph 1.21.0

Florian Hahne

BiocInstaller 1.9.8

Bioconductor Package Maintainer

BiocParallel 0.0.12

Bioconductor Package Maintainer

WARNINGS

biocViews 1.27.2

Bioconductor Package Maintainer

bioDist 1.31.1

Bioconductor Package Maintainer

WARNINGS

biomaRt 2.15.1

Steffen Durinck

BioMVCClass 1.27.0

Elizabeth Whalen

biomvRCNS 0.99.3

Yang Du

BioNet 1.17.1

Marcus Dittrich

BioSeqClass 1.17.1

Li Hong

Biostrings 2.27.12

H. Pages

WARNINGS

biovizBase 1.7.8

Tengfei Yin

birta 1.3.2

Benedikt Zacher , Holger Froehlich

BitSeq 1.3.7

Peter Glaus

BRAIN 1.5.0

Piotr Dittwald

BrainStars 1.3.0

Itoshi NIKAIDO

bridge 1.23.0

Raphael Gottardo

BSgenome 1.27.1

H. Pages

WARNINGS

bsseq 0.7.5

Kasper Daniel Hansen

BufferedMatrix 1.23.0

Benjamin Milo Bolstad

BufferedMatrixMethods 1.23.0

B. M. Bolstad

bumphunter 0.99.34

Rafael A. Irizarry

BUS 1.15.0

Yuanhua Liu

C  A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

CAGEr 0.99.1

Vanja Haberle

CALIB 1.25.0

Hui Zhao

CAMERA 1.15.5

Carsten Kuhl

cancerclass 1.3.3

Daniel Kosztyla

CancerMutationAnalysis 1.3.2

Simina M. Boca

casper 0.99.7

David Rossell

Category 2.25.1

Bioconductor Package Maintainer

categoryCompare 1.3.0

Robert M. Flight

cellGrowth 1.3.0

Julien Gagneur

cellHTS 1.29.0

Ligia Bras

cellHTS2 2.23.2

Joseph Barry

CellNOptR 1.5.21

T.Cokelaer

CGEN 2.0.2

William Wheeler

WARNINGS

CGHbase 1.19.0

Mark van de Wiel

CGHcall 2.19.0

Mark van de Wiel

cghMCR 1.17.0

J. Zhang

CGHnormaliter 1.13.1

Bart P.P. van Houte

CGHregions 1.17.0

Sjoerd Vosse

charm 2.5.6

Peter Murakami

ChemmineR 2.11.19

ChemmineR Team

chimera 1.0.6

Raffaele A Calogero

ChIPpeakAnno 2.7.3

Lihua Julie Zhu

chipseq 1.9.1

Bioconductor Package Maintainer

ChIPseqR 1.13.1

Peter Humburg

ChIPsim 1.13.0

Peter Humburg

ChIPXpress 1.1.0

George Wu

chopsticks 1.23.4

Hin-Tak Leung

chroGPS 1.1.0

Oscar Reina

WARNINGS

ChromHeatMap 1.13.1

Tim F. Rayner

cisPath 0.99.7

Likun Wang

clippda 1.9.0

Stephen Nyangoma

clipper 0.99.6

Paolo Martini

Clonality 1.7.0

Irina Ostrovnaya

clst 1.7.0

Noah Hoffman

clstutils 1.7.0

Noah Hoffman

clusterProfiler 1.7.1

Guangchuang Yu

WARNINGS

clusterStab 1.31.0

James W. MacDonald

CMA 1.17.2

Christoph Bernau

cn.farms 1.7.4

Andreas Mitterecker

cn.mops 1.5.16

Guenter Klambauer

CNAnorm 1.5.0

Stefano Berri

CNORdt 1.1.0

A. MacNamara

CNORfeeder 0.99.2

F.Eduati

CNORfuzzy 1.1.4

T. Cokelaer

CNORode 1.1.4

David Henriques

CNTools 1.15.0

J. Zhang

cnvGSA 1.3.0

Robert Ziman

CNVtools 1.53.0

Chris Barnes

WARNINGS

CoCiteStats 1.31.0

Bioconductor Package Maintainer

codelink 1.27.0

Diego Diez

CoGAPS 1.9.3

Elana J. Fertig

N O T S U P P O R T E D

coGPS 1.3.0

Yingying Wei

ConsensusClusterPlus 1.11.2

Matt Wilkerson

convert 1.35.0

Yee Hwa (Jean) Yang

copa 1.27.0

James W. MacDonald

Cormotif 1.5.0

Yingying Wei

CorMut 1.1.1

Zhenpeng Li

coRNAi 1.9.0

Elin Axelsson

CORREP 1.25.0

Dongxiao Zhu

cqn 1.5.0

Kasper Daniel Hansen

CRImage 1.7.1

Henrik Failmezger

crlmm 1.17.15

Benilton S Carvalho , Robert Scharpf , Matt Ritchie

CSAR 1.11.0

Jose M Muino

ctc 1.33.0

Antoine Lucas

cummeRbund 2.1.0

Loyal A. Goff

cycle 1.13.0

Matthias Futschik

D  A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

daMA 1.31.0

Jobst Landgrebe

DART 1.5.0

Katherine Lawler

DAVIDQuery 1.19.0

Roger Day

DBChIP 1.3.0

Kun Liang

ddCt 1.13.0

Jitao David Zhang

ddgraph 1.3.1

Robert Stojnic

DECIPHER 1.5.0

Erik Wright

ERROR

skipped

DeconRNASeq 1.0.1

Ting Gong

DEDS 1.33.0

Yuanyuan Xiao

deepSNV 1.5.0

Moritz Gerstung

DEGraph 1.11.0

Laurent Jacob

DEGseq 1.13.2

Likun Wang

deltaGseg 0.99.2

Diana Low

DESeq 1.11.6

Simon Anders

DESeq2 0.99.21

Michael Love

DEXSeq 1.5.9

Alejandro Reyes

dexus 0.99.2

Guenter Klambauer

DFP 1.17.0

Rodrigo Alvarez-Glez

DiffBind 1.5.9

Rory Stark

diffGeneAnalysis 1.41.0

Choudary Jagarlamudi

DirichletMultinomial 1.1.0

Martin Morgan

dks 1.5.0

Jeffrey T. Leek

DNAcopy 1.33.1

Venkatraman E. Seshan

domainsignatures 1.19.0

Florian Hahne

DOSE 1.5.1

Guangchuang Yu

DriverNet 0.99.0

Jiarui Ding

DrugVsDisease 1.99.5

j. Saez-Rodriguez

DSS 1.2.0

Hao Wu

DTA 2.5.1

Bjoern Schwalb

dualKS 1.19.2

Yarong Yang

dyebias 1.17.0

Philip Lijnzaad

WARNINGS

DynDoc 1.37.0

Bioconductor Package Maintainer

E  A  B  C  D [E] F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

EasyqpcR 1.1.3

Le Pape Sylvain

easyRNASeq 1.5.1

Nicolas Delhomme

EBarrays 2.23.0

Ming Yuan

WARNINGS

EBcoexpress 1.3.0

John A. Dawson

EBImage 4.1.6

Andrzej Oles

ecolitk 1.31.1

Laurent Gautier

EDASeq 1.5.0

Davide Risso

edgeR 3.1.9

Mark Robinson , Davis McCarthy , Yunshun Chen , Gordon Smyth

eiR 0.99.4

Kevin Horan

eisa 1.11.0

Gabor Csardi

ERROR

skipped

ensemblVEP 0.99.14

Valerie Obenchain

ENVISIONQuery 1.7.0

Alex Lisovich , Roger Day

epigenomix 0.99.0

Hans-Ulrich Klein

ExiMiR 2.1.1

Sylvain Gubian

exomeCopy 1.5.8

Michael Love

explorase 1.23.0

Michael Lawrence

ERROR

skipped

ExpressionView 1.11.1

Gabor Csardi

externalVector 1.25.2

Bioconductor Package Maintainer

F  A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

fabia 2.5.1

Sepp Hochreiter

factDesign 1.35.1

Denise Scholtens

farms 1.11.0

Djork-Arne Clevert

fastseg 1.5.2

Guenter Klambauer

fdrame 1.31.0

Effi Kenigsberg

ffpe 1.3.0

Levi Waldron

WARNINGS

flagme 1.15.1

Mark Robinson

flowClust 2.99.40

Raphael Gottardo

WARNINGS

flowCore 1.25.13

M.Jiang

flowFlowJo 1.17.0

John J. Gosink

flowFP 1.17.1

Herb Holyst

flowMeans 1.11.1

Nima Aghaeepour

flowMerge 2.7.0

Greg Finak

flowPeaks 1.1.0

Yongchao Ge

flowPhyto 1.11.0

Chris Berthiaume

flowPlots 1.7.0

N. Hawkins

flowQ 1.19.5

Mike Jiang

WARNINGS

flowQB 1.1.1

Faysal El Khettabi

flowStats 1.17.8

Greg Finak and Mike Jiang

flowTrans 1.11.1

Greg Finak

flowType 1.5.0

Nima Aghaeepour

flowUtils 1.19.1

Nishant Gopalakrishnan

flowViz 1.23.3

Mike Jiang

flowWorkspace 1.5.90

Greg Finak ,Mike Jiang

fmcsR 1.1.3

ChemmineR Team

frma 1.11.0

Matthew N. McCall

frmaTools 1.11.0

Matthew N. McCall

FunciSNP 1.1.9

Simon G. Coetzee

WARNINGS

G  A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

gaga 2.5.4

David Rossell

WARNINGS

gage 2.9.2

Weijun Luo

gaggle 1.27.1

Christopher Bare

gaia 2.3.0

S. Morganella

gCMAP 1.3.5

Thomas Sandmann

gCMAPWeb 0.99.2

Thomas Sandmann

gcrma 2.31.2

Z. Wu

genArise 1.35.1

IFC Development Team

WARNINGS

GeneAnswers 2.0.0

Gang Feng , Pan Du and Tian Xia

ERROR

skipped

GeneExpressionSignature 1.5.1

Yang Cao

genefilter 1.41.3

Bioconductor Package Maintainer

genefu 1.9.1

Benjamin Haibe-Kains , Markus Schroeder

GeneGA 1.9.1

Zhenpeng Li

GeneGroupAnalysis 1.5.0

Alejandro Quiroz-Zarate

GeneMeta 1.31.1

Bioconductor Package Maintainer

GeneNetworkBuilder 1.1.1

Jianhong Ou

geneplotter 1.37.0

Bioconductor Package Maintainer

geneRecommender 1.31.0

Greg Hather

GeneRegionScan 1.15.5

Lasse Folkersen

GeneSelectMMD 2.3.2

Weiliang Qiu

GeneSelector 2.9.0

Martin Slawski

GeneticsDesign 1.27.0

The R Genetics Project

GeneticsPed 1.21.1

David Henderson

genoCN 1.11.0

Wei Sun

GenomeGraphs 1.19.0

Steffen Durinck

genomeIntervals 1.15.3

Julien Gagneur

genomes 2.5.1

Chris Stubben

GenomicFeatures 1.11.16

Bioconductor Package Maintainer

GenomicRanges 1.11.40

Bioconductor Package Maintainer

WARNINGS

Genominator 1.13.0

James Bullard

genoset 1.11.26

Peter M. Haverty

GEOmetadb 1.19.0

Jack Zhu

GEOquery 2.25.1

Sean Davis

GEOsubmission 1.11.0

Alexandre Kuhn

GEWIST 1.3.0

Wei Q. Deng

GGBase 3.21.2

VJ Carey

ggbio 1.7.14

Tengfei Yin

WARNINGS

GGtools 4.7.24

VJ Carey

girafe 1.11.4

J. Toedling

GLAD 2.22.0

Philippe Hupe

GlobalAncova 3.27.0

Manuela Hummel

globaltest 5.13.1

Jelle Goeman

gmapR 1.1.11

Cory Barr

ERROR

GOFunction 1.5.0

Zheng Guo

goProfiles 1.21.0

Alex Sanchez

GOSemSim 1.17.1

Guangchuang Yu

WARNINGS

goseq 1.11.4

Matthew Young

GOstats 2.25.1

Bioconductor Package Maintainer

goTools 1.33.0

Agnes Paquet

gpls 1.31.0

Bioconductor Package Maintainer

gprege 1.3.0

Alfredo A. Kalaitzis

graph 1.37.7

Bioconductor Package Maintainer

GraphAlignment 1.23.1

Joern P. Meier

GraphAT 1.31.0

Thomas LaFramboise

graphite 1.5.1

Gabriele Sales

GraphPAC 0.99.0

Gregory Ryslik

GRENITS 1.11.0

Edward Morrissey

GSEABase 1.21.6

Bioconductor Package Maintainer

GSEAlm 1.19.0

Assaf Oron

GSRI 2.7.0

Julian Gehring

GSVA 1.7.9

Justin Guinney

WARNINGS

Gviz 1.3.14

Florian Hahne

gwascat 1.3.2

VJ Carey

GWASTools 1.5.9

Stephanie M. Gogarten

H  A  B  C  D  E  F  G [H] I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

hapFabia 1.1.7

Sepp Hochreiter

Harshlight 1.31.0

Maurizio Pellegrino

HCsnip 0.99.1

Askar Obulkasim

Heatplus 2.5.0

Alexander Ploner

HELP 1.17.1

Reid F. Thompson

HEM 1.31.0

HyungJun Cho

HilbertVis 1.17.0

Simon Anders

WARNINGS

HilbertVisGUI 1.17.0

Simon Anders

WARNINGS

HiTC 1.3.3

Nicolas Servant

HMMcopy 1.1.0

Daniel Lai , Gavin Ha , Sohrab Shah

WARNINGS

hopach 2.19.0

Katherine S. Pollard

hpar 1.1.2

Laurent Gatto

HTqPCR 1.13.1

Heidi Dvinge

HTSanalyzeR 2.11.0

Xin Wang

HTSeqGenie 1.1.0

Gregoire Pau

N O T S U P P O R T E D

htSeqTools 1.5.1

Oscar Reina

WARNINGS

HTSFilter 0.99.6

Andrea Rau

WARNINGS

HybridMTest 1.3.0

Demba Fofana

hyperdraw 1.11.0

Paul Murrell

hypergraph 1.31.0

Bioconductor Package Maintainer

I  A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

iASeq 1.3.0

Yingying Wei

iBBiG 1.3.0

Aedin Culhane

ibh 1.7.0

Kircicegi Korkmaz

iBMQ 0.99.1

Marie-Pier Scott-Boyer

Icens 1.31.0

Bioconductor Package Maintainer

iChip 1.13.0

Qianxing Mo

idiogram 1.35.0

Karl J. Dykema

IdMappingAnalysis 1.3.1

Alex Lisovich , Roger Day

WARNINGS

IdMappingRetrieval 1.5.0

Alex Lisovich , Roger Day

WARNINGS

iFlow 2.11.1

Kyongryun Lee

ERROR

illuminaio 0.1.5

Kasper Daniel Hansen

imageHTS 1.9.1

Gregoire Pau

impute 1.33.0

Balasubramanian Narasimhan

inSilicoDb 1.7.4

Jonatan Taminau , David Steenhoff

inSilicoMerging 1.3.1

Jonatan Taminau , Stijn Meganck

inveRsion 1.7.1

Alejandro Caceres

iontree 1.5.0

Mingshu Cao

iPAC 1.1.3

Gregory Ryslik

IPPD 1.7.0

Martin Slawski

IRanges 1.17.41

Bioconductor Package Maintainer

WARNINGS

iSeq 1.11.0

Qianxing Mo

isobar 1.5.3

Florian P Breitwieser

IsoGeneGUI 1.15.0

Setia Pramana

WARNINGS

ITALICS 2.19.0

Guillem Rigaill

iterativeBMA 1.17.0

Ka Yee Yeung

iterativeBMAsurv 1.17.0

Ka Yee Yeung

J  A  B  C  D  E  F  G  H  I [J] K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

jmosaics 0.99.0

Xin Zeng

joda 1.7.0

Ewa Szczurek

K  A  B  C  D  E  F  G  H  I  J [K] L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

KCsmart 2.17.1

Jorma de Ronde

KEGGgraph 1.15.0

Jitao David Zhang

keggorthology 2.11.0

VJ Carey

KEGGprofile 1.1.0

Shilin Zhao

KEGGREST 0.99.6

Bioconductor Package Maintainer

KEGGSOAP 1.33.1

Bioconductor Package Maintainer

L  A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

lapmix 1.25.0

Yann Ruffieux

LBE 1.27.0

Cyril Dalmasso

les 1.9.1

Julian Gehring

limma 3.15.18

Gordon Smyth

limmaGUI 1.35.1

Keith Satterley

LiquidAssociation 1.13.0

Yen-Yi Ho

lmdme 1.1.5

Cristobal Fresno

LMGene 2.15.0

Blythe Durbin-Johnson

logicFS 1.29.2

Holger Schwender

logitT 1.17.0

Tobias Guennel

lol 1.7.0

Yinyin Yuan

LPE 1.33.0

Nitin Jain

LPEadj 1.19.0

Carl Murie

lpNet 0.99.0

Bettina Knapp

lumi 2.11.6

Pan Du

WARNINGS

LVSmiRNA 1.9.2

Stefano Calza

M  A  B  C  D  E  F  G  H  I  J  K  L [M] N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

maanova 1.29.0

Keith Sheppard

WARNINGS

macat 1.33.0

Joern Toedling

maCorrPlot 1.29.0

Alexander Ploner

maDB 1.31.0

Johannes Rainer

made4 1.33.0

Aedin Culhane

maigesPack 1.23.0

Gustavo H. Esteves

makecdfenv 1.35.3

James W. MacDonald

WARNINGS

MANOR 1.31.0

Pierre Neuvial

WARNINGS

manta 1.5.0

Chris Berthiaume , Adrian Marchetti

MantelCorr 1.29.0

Brian Steinmeyer

marray 1.37.0

Yee Hwa (Jean) Yang

maSigPro 1.31.0

Maria Jose Nueda

maskBAD 1.3.0

Michael Dannemann

MassArray 1.11.0

Reid F. Thompson

MassSpecWavelet 1.25.0

Pan Du

matchBox 1.1.0

Luigi Marchionni

MBCB 1.13.0

Jeff Allen

mBPCR 1.13.0

P.M.V. Rancoita

mcaGUI 1.7.0

Wade K. Copeland

ERROR

MCRestimate 2.15.0

Marc Johannes

mdqc 1.21.0

Gabriela Cohen-Freue

MeasurementError.cor 1.31.0

Beiying Ding

MEDIPS 1.9.4

Lukas Chavez

MEDME 1.19.0

Mattia Pelizzola

MergeMaid 2.31.0

Xiaogang Zhong

metaArray 1.37.0

Hyungwon Choi

metahdep 1.17.0

John R. Stevens

methVisual 1.11.0

Arie Zackay

methyAnalysis 1.1.8

Pan Du

MethylSeekR 0.99.1

Lukas Burger

methylumi 2.5.14

Sean Davis

Mfuzz 2.17.1

Matthias Futschik

mgsa 1.7.1

Sebastian Bauer

MiChip 1.13.0

Jonathon Blake

microRNA 1.17.0

"James F. Reid"

MineICA 0.99.1

Anne Biton

minet 3.13.1

Patrick E. Meyer

minfi 1.5.6

Kasper Daniel Hansen

MinimumDistance 1.3.7

Robert B Scharpf

MiPP 1.31.0

Sukwoo Kim

MiRaGE 1.1.0

Y-h. Taguchi

miRNApath 1.19.0

James M. Ward

MLInterfaces 1.39.5

V. Carey

MLP 1.7.3

Tobias Verbeke

MmPalateMiRNA 1.8.0

Guy Brock

mosaics 1.7.0

Dongjun Chung

MotifDb 1.1.6

Paul Shannon

motifRG 1.3.2

Zizhen Yao

WARNINGS

motifStack 1.2.14

Jianhong Ou

MotIV 1.15.1

Eloi Mercier , Raphael Gottardo

MSnbase 1.7.25

Laurent Gatto

Mulcom 1.9.1

Claudio Isella

multiscan 1.19.0

Mizanur Khondoker

multtest 2.15.0

Katherine S. Pollard

MVCClass 1.33.0

Elizabeth Whalen

mzR 1.5.8

Bernd Fischer

N  A  B  C  D  E  F  G  H  I  J  K  L  M [N] O  P  Q  R  S  T  U  V  W  X  Y  Z 

NarrowPeaks 1.3.2

Pedro Madrigal

ncdfFlow 1.5.27

M. Jiang

NCIgraph 1.7.0

Laurent Jacob

nem 2.35.1

Holger Froehlich

netresponse 1.11.24

Leo Lahti

networkBMA 1.1.0

Chris Fraley

nnNorm 2.23.0

Adi Laurentiu Tarca

NOISeq 1.1.5

Sonia Tarazona

NormqPCR 1.5.2

James Perkins

WARNINGS

NTW 1.9.0

Yuanhua Liu

nucleR 1.7.2

Oscar Flores

nudge 1.25.0

N. Dean

NuPoP 1.9.0

Ji-Ping Wang

O  A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

occugene 1.19.0

Oliver Will

OCplus 1.33.0

Alexander Ploner

oligo 1.23.1

Benilton Carvalho

oligoClasses 1.21.16

Benilton Carvalho and Robert Scharpf

OLIN 1.37.1

Matthias Futschik

OLINgui 1.33.1

Matthias Futschik

oneChannelGUI 1.25.7

Raffaele A Calogero

ontoCAT 1.11.0

Natalja Kurbatova

OrderedList 1.31.0

Claudio Lottaz

OrganismDbi 1.1.14

Biocore Data Team

OSAT 1.6.1

Li Yan

OTUbase 1.9.1

Daniel Beck

OutlierD 1.23.0

Sukwoo Kim

P  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

PADOG 1.1.0

Adi Laurentiu Tarca

PAnnBuilder 1.23.0

Li Hong

panp 1.29.1

Peter Warren

PANR 1.5.1

Xin Wang

parody 1.17.0

VJ Carey

PathNet 0.99.2

Jason B. Smith

pathRender 1.27.1

Li Long

pathview 0.99.9

Weijun Luo

pcaGoPromoter 1.3.0

Morten Hansen

pcaMethods 1.49.1

Henning Redestig

pcot2 1.27.0

Sarah Song

PCpheno 1.21.0

Nolwenn Le Meur

ERROR

skipped

pdInfoBuilder 1.23.1

Benilton Carvalho

pdmclass 1.31.0

James W. MacDonald

PGSEA 1.33.0

Karl Dykema

pgUtils 1.31.0

Johannes Rainer

phenoDist 1.7.0

Xian Zhang

N O T S U P P O R T E D

phenoTest 1.7.4

Evarist Planet

phyloseq 1.3.23

Paul J. McMurdie

pickgene 1.31.0

Brian S. Yandell

PICS 2.1.01

Renan Sauteraud

PING 2.1.02

Renan Sauteraud

pint 1.11.0

Olli-Pekka Huovilainen

pkgDepTools 1.25.0

Seth Falcon

plateCore 1.17.0

Errol Strain

plgem 1.31.2

Norman Pavelka

plier 1.29.0

Crispin Miller

WARNINGS

PLPE 1.19.0

Soo-heang Eo

plrs 0.99.1

Gwenael G.R. Leday to

plw 1.19.0

Magnus Astrand

ppiStats 1.25.0

Tony Chiang

ERROR

skipped

prada 1.35.2

Florian Hahne

PREDA 1.5.0

Francesco Ferrari

predictionet 1.5.0

Benjamin Haibe-Kains , Catharina Olsen

preprocessCore 1.21.1

Benjamin Milo Bolstad

PROcess 1.35.0

Xiaochun Li

procoil 1.9.0

Ulrich Bodenhofer

pRoloc 0.99.16

Laurent Gatto

PROMISE 1.11.0

Stan Pounds , Xueyuan Cao

proteinProfiles 0.99.0

Julian Gehring

WARNINGS

puma 3.1.1

Richard Pearson

WARNINGS

pvac 1.7.0

Jun Lu , Pierre R. Bushel

pvca 0.99.3

Jianying LI

PWMEnrich 2.0.0

Robert Stojnic

Q  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P [Q] R  S  T  U  V  W  X  Y  Z 

qpcrNorm 1.17.0

Jessica Mar

qpgraph 1.15.6

Robert Castelo

qrqc 1.13.1

Vince Buffalo

QUALIFIER 1.3.7

Mike Jiang

WARNINGS

quantsmooth 1.25.0

Jan Oosting

QuasR 0.99.7

Michael Stadler

qvalue 1.33.0

John D. Storey

R  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

r3Cseq 1.5.1

Supat Thongjuea

R453Plus1Toolbox 1.9.5

Hans-Ulrich Klein

rama 1.33.0

Raphael Gottardo

RamiGO 1.5.0

Markus Schroeder

randPack 1.5.0

Robert Gentleman

RankProd 2.31.1

Fangxin Hong

RbcBook1 1.27.0

Vince Carey

RBGL 1.35.0

Bioconductor Package Maintainer

RBioinf 1.19.1

Robert Gentleman

rBiopaxParser 0.99.10

Frank Kramer

Rbowtie 0.99.3

Michael Stadler

rbsurv 2.17.0

Soo-heang Eo

Rcade 1.1.3

Jonathan Cairns

RCASPAR 1.5.0

Douaa Mugahid , Lars Kaderali

RchyOptimyx 1.3.2

Adrin Jalali , Nima Aghaeepour

RCytoscape 1.9.7

Paul Shannon

Rdisop 1.19.2

Steffen Neumann

RDRToolbox 1.9.0

Christoph Bartenhagen

ReactomePA 1.3.1

Guangchuang Yu

ReadqPCR 1.5.3

James Perkins

reb 1.37.0

Karl J. Dykema

RedeR 1.6.2

Mauro Castro

REDseq 1.5.0

Lihua Julie Zhu

RefPlus 1.29.0

Kai-Ming Chang

Repitools 1.5.6

Mark Robinson

ReportingTools 1.99.3

Jason A. Hackney , Gabriel Becker

ReQON 1.5.0

Christopher Cabanski

Resourcerer 1.33.0

Jianhua Zhang

rGADEM 2.7.0

Arnaud Droit

WARNINGS

RGalaxy 1.3.7

Bioconductor Package Maintainer

Rgraphviz 2.3.8

Kasper Daniel Hansen

WARNINGS

rhdf5 2.3.5

Bernd Fischer

rHVDM 1.25.0

Martino Barenco

Ringo 1.23.1

J. Toedling

RIPSeeker 0.99.9

Yue Li

Risa 1.1.0

Alejandra Gonzalez-Beltran, ISA Team

RLMM 1.21.0

Nusrat Rabbee

Rmagpie 1.15.1

Camille Maumet

RMAPPER 1.9.0

Heike Sichtig , Alberto Riva

RMassBank 1.1.1

Michael Stravs, Emma Schymanski

ERROR

rMAT 3.9.1

Arnaud Droit and Raphael Gottardo

RmiR 1.15.0

Francesco Favero

RNAinteract 1.7.2

Bernd Fischer

RNAither 2.7.0

Nora Rieber

rnaSeqMap 2.13.1

Michal Okoniewski

RNASeqPower 0.99.2

Terry M Therneau

ROC 1.35.0

Vince Carey

Rolexa 1.15.1

Jacques Rougemont

rols 1.1.6

Laurent Gatto

ROntoTools 0.99.2

Calin Voichita

RPA 1.15.41

Leo Lahti

RpsiXML 2.0.0

Jitao David Zhang

ERROR

skipped

rqubic 1.5.1

Jitao David Zhang

Rsamtools 1.11.27

Bioconductor Package Maintainer

rsbml 2.17.0

Michael Lawrence

ERROR

skipped

rSFFreader 0.7.0

Matt Settles

Rsubread 1.9.3

Wei Shi

RSVSim 0.99.3

Christoph Bartenhagen

WARNINGS

rTANDEM 0.99.5

Frederic Fournier

RTCA 1.11.1

Jitao David Zhang

RTopper 1.5.1

Luigi Marchionni

rtracklayer 1.19.11

Michael Lawrence

WARNINGS

Rtreemix 1.21.1

Jasmina Bogojeska

ERROR

skipped

RWebServices 1.23.2

Martin Morgan

N O T S U P P O R T E D

S  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

safe 2.99.1

William T. Barry

sagenhaft 1.29.1

Tim Beissbarth

SAGx 1.33.0

Per Broberg,

SamSPECTRAL 1.13.4

Habil Zare

SANTA 0.99.5

Alex Cornish

SBMLR 1.55.0

Tomas Radivoyevitch

SCAN.UPC 1.99.4

Stephen R. Piccolo

ScISI 1.31.0

Tony Chiang

ERROR

skipped

segmentSeq 1.11.0

Thomas J. Hardcastle

SeqArray 0.99.1

Xiuwen Zheng

seqbias 1.7.0

Daniel Jones

seqLogo 1.25.0

Oliver Bembom

ShortRead 1.17.10

Bioconductor Package Maintainer

sigaR 1.3.2

Wessel N. van Wieringen

siggenes 1.33.1

Holger Schwender

sigPathway 1.27.0

Weil Lai

SIM 1.29.2

Renee X. de Menezes

simpleaffy 2.35.1

Crispin Miller

sizepower 1.29.0

Weiliang Qiu

SJava 0.85.2

Martin Morgan

N O T S U P P O R T E D

SLGI 1.19.0

Nolwenn Le Meur

SLqPCR 1.25.0

Matthias Kohl

SMAP 1.23.0

Robin Andersson

SNAGEE 0.99.1

David Venet

snapCGH 1.29.0

John Marioni

snm 1.7.0

Brig Mecham

SNPchip 2.5.9

Robert Scharpf

snpStats 1.9.3

David Clayton

SomatiCA 0.99.2

Mengjie Chen

spade 1.7.0

Michael Linderman

SpeCond 1.13.0

Florence Cavalli

SPEM 0.99.3

Xinyi YANG

SPIA 2.10.0

Adi Laurentiu Tarca

spikeLI 2.19.1

Enrico Carlon

spkTools 1.15.0

Matthew N McCall

splicegear 1.31.1

Laurent Gautier

splots 1.25.0

Wolfgang Huber

spotSegmentation 1.33.0

Chris Fraley

SQUADD 1.9.1

Martial Sankar

SRAdb 1.13.2

Jack Zhu

sscore 1.31.0

Richard Kennedy

ssize 1.33.0

Gregory R. Warnes

SSPA 1.99.5

Maarten van Iterson

staRank 1.1.0

Juliane Siebourg

Starr 1.15.2

Benedikt Zacher

stepNorm 1.31.0

Yuanyuan Xiao

stepwiseCM 1.5.0

Askar Obulkasim

Streamer 1.5.1

Martin Morgan

survcomp 1.9.3

Benjamin Haibe-Kains , Markus Schroeder , Catharina Olsen

sva 3.5.0

Jeffrey T. Leek

synapter 1.1.5

Laurent Gatto

T  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

TargetSearch 1.15.4

Alvaro Cuadros-Inostroza

TDARACNE 1.9.0

Zoppoli Pietro

TEQC 2.7.3

Manuela Hummel

ternarynet 1.3.2

Matthew N. McCall

tigre 1.13.2

Antti Honkela

tilingArray 1.37.0

Zhenyu Xu

timecourse 1.31.0

Yu Chuan Tai

tkWidgets 1.37.0

J. Zhang

topGO 2.11.0

Adrian Alexa

TransView 1.2.9

Julius Muller

triform 1.1.0

Tony Håndstad Developer

WARNINGS

trigger 1.5.1

John D. Storey

tspair 1.17.0

Jeffrey T. Leek

TSSi 1.5.0

Julian Gehring

TurboNorm 1.7.2

Maarten van Iterson

tweeDEseq 1.5.0

Juan R Gonzalez

twilight 1.35.0

Stefanie Scheid

TypeInfo 1.25.0

Duncan Temple Lang

U  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T [U] V  W  X  Y  Z 

UniProt.ws 1.99.15

Marc Carlson

V  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U [V] W  X  Y  Z 

VanillaICE 1.21.27

Robert Scharpf

VariantAnnotation 1.5.45

Valerie Obenchain

VariantTools 1.1.13

Michael Lawrence

N O T S U P P O R T E D

vbmp 1.27.0

Nicola Lama

Vega 1.7.0

Sandro Morganella

VegaMC 2.3.0

Sandro Morganella

virtualArray 1.3.1

Andreas Heider

vsn 3.27.2

Wolfgang Huber

W  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V [W] X  Y  Z 

wateRmelon 0.99.16

Leo

waveTiling 1.1.1

Kristof De Beuf

weaver 1.25.0

Seth Falcon

webbioc 1.31.0

Colin A. Smith

widgetTools 1.37.0

Jianhua Zhang

X  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W [X] Y  Z 

xcms 1.35.6

Ralf Tautenhahn

XDE 2.5.3

Robert Scharpf

xmapbridge 1.17.0

Tim Yates

xmapcore 1.13.0

Tim Yates

xps 1.19.8

Christian Stratowa

Y  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X [Y] Z 

yaqcaffy 1.19.0

Laurent Gatto

Z  A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y [Z]

zlibbioc 1.5.0

Bioconductor Package Maintainer