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Package 521/658HostnameOS / ArchBUILDCHECKBUILD BIN
Rdisop 1.19.2
Steffen Neumann
Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop
Last Changed Rev: 71574 / Revision: 74756
Last Changed Date: 2012-11-29 22:36:31 -0800 (Thu, 29 Nov 2012)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: Rdisop
Version: 1.19.2
Command: rm -rf Rdisop.buildbin-libdir && mkdir Rdisop.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=Rdisop.buildbin-libdir Rdisop_1.19.2.tar.gz
StartedAt: 2013-03-24 12:04:15 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 12:04:48 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 33.4 seconds
RetCode: 0
Status:  OK 
PackageFile: Rdisop_1.19.2.tgz
PackageFileSize: 410.5 KiB

Command output

* installing *source* package 'Rdisop' ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c disop.cpp -o disop.o
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&, int)':
disop.cpp:825: warning: deprecated conversion from string constant to 'char*'
disop.cpp:827: warning: deprecated conversion from string constant to 'char*'
disop.cpp:829: warning: deprecated conversion from string constant to 'char*'
disop.cpp:831: warning: deprecated conversion from string constant to 'char*'
disop.cpp:832: warning: deprecated conversion from string constant to 'char*'
disop.cpp:833: warning: deprecated conversion from string constant to 'char*'
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/element.cpp -o imslib/src/ims/element.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/composedelement.cpp -o imslib/src/ims/composedelement.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/isotopedistribution.cpp -o imslib/src/ims/isotopedistribution.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/alphabet.cpp -o imslib/src/ims/alphabet.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/weights.cpp -o imslib/src/ims/weights.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/distributedalphabet.cpp -o imslib/src/ims/distributedalphabet.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/transformation.cpp -o imslib/src/ims/transformation.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/isotopespecies.cpp -o imslib/src/ims/isotopespecies.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/alphabettextparser.cpp -o imslib/src/ims/base/parser/alphabettextparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/distributedalphabettextparser.cpp -o imslib/src/ims/base/parser/distributedalphabettextparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/massestextparser.cpp -o imslib/src/ims/base/parser/massestextparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/moleculesequenceparser.cpp -o imslib/src/ims/base/parser/moleculesequenceparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/standardmoleculesequenceparser.cpp -o imslib/src/ims/base/parser/standardmoleculesequenceparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/keggligandcompoundsparser.cpp -o imslib/src/ims/base/parser/keggligandcompoundsparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/base/parser/moleculeionchargemodificationparser.cpp -o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/calib/linepairstabber.cpp -o imslib/src/ims/calib/linepairstabber.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/calib/matchmatrix.cpp -o imslib/src/ims/calib/matchmatrix.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/calib/linearpointsetmatcher.cpp -o imslib/src/ims/calib/linearpointsetmatcher.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/decomp/realmassdecomposer.cpp -o imslib/src/ims/decomp/realmassdecomposer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/utils/distribution.cpp -o imslib/src/ims/utils/distribution.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/distributionprobabilityscorer.cpp -o imslib/src/ims/distributionprobabilityscorer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/characteralphabet.cpp -o imslib/src/ims/characteralphabet.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include"  -I./imslib/src/ -fPIC  -mtune=core2 -g -O2  -c imslib/src/ims/nitrogenrulefilter.cpp -o imslib/src/ims/nitrogenrulefilter.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rdisop.so disop.o imslib/src/ims/element.o imslib/src/ims/composedelement.o imslib/src/ims/isotopedistribution.o imslib/src/ims/alphabet.o imslib/src/ims/weights.o imslib/src/ims/distributedalphabet.o imslib/src/ims/transformation.o imslib/src/ims/isotopespecies.o imslib/src/ims/base/parser/alphabettextparser.o imslib/src/ims/base/parser/distributedalphabettextparser.o imslib/src/ims/base/parser/massestextparser.o imslib/src/ims/base/parser/moleculesequenceparser.o imslib/src/ims/base/parser/standardmoleculesequenceparser.o imslib/src/ims/base/parser/keggligandcompoundsparser.o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o imslib/src/ims/calib/linepairstabber.o imslib/src/ims/calib/matchmatrix.o imslib/src/ims/calib/linearpointsetmatcher.o imslib/src/ims/decomp/realmassdecomposer.o imslib/src/ims/utils/distribution.o imslib/src/ims/distributionprobabilityscorer.o imslib/src/ims/characteralphabet.o imslib/src/ims/nitrogenrulefilter.o /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppClassic/lib/libRcppClassic.a /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/lib/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/Rdisop.buildbin-libdir/Rdisop/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Rdisop.Rnw' 
** testing if installed package can be loaded
packaged installation of 'Rdisop' as 'Rdisop_1.19.2.tgz'
* DONE (Rdisop)