Package: BGmix

Version: 1.19.0

Command: rm -rf BGmix.buildbin-libdir && mkdir BGmix.buildbin-libdir && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL --build --no-multiarch --library=BGmix.buildbin-libdir BGmix_1.19.0.tar.gz

StartedAt: 2013-03-24 11:26:09 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:26:19 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 10.1 seconds

RetCode: 0

Status:  OK

PackageFile: BGmix_1.19.0.tgz

PackageFileSize: 377.2 KiB

* installing *source* package 'BGmix' ...
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -DUSING_R -c rundir.cpp -o rundir.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I ../boostIncl -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
rm -r ../boostIncl 
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BGmix.buildbin-libdir/BGmix/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'BGmix.Rnw' 
** testing if installed package can be loaded
packaged installation of 'BGmix' as 'BGmix_1.19.0.tgz'
* DONE (BGmix)