BHC 1.11.0
Rich Savage
| Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BHC | | Last Changed Rev: 70052 / Revision: 74756 | | Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
* installing *source* package 'BHC' ...
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
In file included from BlockCovarianceMatrix.h:16,
from BlockCovarianceMatrix.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c DataSet.cpp -o DataSet.o
In file included from DataSet.h:16,
from DataSet.cpp:13:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
In file included from DirichletProcessMixture.h:4,
from DirichletProcessMixture.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MultinomialDataSet.cpp -o MultinomialDataSet.o
In file included from DataSet.h:16,
from MultinomialDataSet.h:4,
from MultinomialDataSet.cpp:1:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Node.cpp -o Node.o
In file included from Node.h:16,
from Node.cpp:13:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from CubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.h:20,
from RobustCubicSplineTimecourseDataSet.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20,
from RobustSquaredExponentialTimecourseDataSet.h:20,
from RobustSquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
In file included from SquaredExponentialTimecourseDataSet.h:20,
from SquaredExponentialTimecourseDataSet.cpp:15:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c TimecourseDataSet.cpp -o TimecourseDataSet.o
In file included from DataSet.h:16,
from TimecourseDataSet.h:20,
from TimecourseDataSet.cpp:13:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bhc.cpp -o bhc.o
In file included from bhc.cpp:17:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c gammaln.cpp -o gammaln.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c header.cpp -o header.o
In file included from header.cpp:1:
header.h:16:1: warning: "NDEBUG" redefined
<command-line>: warning: this is the location of the previous definition
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -fopenmp -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c multinomial_binevidence.cpp -o multinomial_binevidence.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/BHC.buildbin-libdir/BHC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'bhc.Rnw'
** testing if installed package can be loaded
packaged installation of 'BHC' as 'BHC_1.11.0.tgz'
* DONE (BHC)