CNORode 1.1.4
David Henriques
| Snapshot Date: 2013-03-23 17:02:20 -0700 (Sat, 23 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CNORode | | Last Changed Rev: 74611 / Revision: 74756 | | Last Changed Date: 2013-03-20 12:23:18 -0700 (Wed, 20 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
* installing *source* package 'CNORode' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodea.c -o cvodea.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodea_io.c -o cvodea_io.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes.c -o cvodes.o
cvodes.c: In function 'cvProcessError':
cvodes.c:8945: warning: format not a string literal and no format arguments
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_band.c -o cvodes_band.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_bandpre.c -o cvodes_bandpre.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_bbdpre.c -o cvodes_bbdpre.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_dense.c -o cvodes_dense.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_diag.c -o cvodes_diag.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_direct.c -o cvodes_direct.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_io.c -o cvodes_io.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_spbcgs.c -o cvodes_spbcgs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_spgmr.c -o cvodes_spgmr.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_spils.c -o cvodes_spils.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c cvodes_sptfqmr.c -o cvodes_sptfqmr.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c decimal2binary.c -o decimal2binary.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c findStates.c -o findStates.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c fnvector_serial.c -o fnvector_serial.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c getAdjacencyMatrix.c -o getAdjacencyMatrix.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c getNumBits.c -o getNumBits.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c getNumInputs.c -o getNumInputs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c getStateIndex.c -o getStateIndex.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c getTruthTables.c -o getTruthTables.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c get_count_bits.c -o get_count_bits.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c get_input_index.c -o get_input_index.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c get_support_truth_tables.c -o get_support_truth_tables.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c get_truth_tables_index.c -o get_truth_tables_index.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c hill_function.c -o hill_function.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c linear_transfer_function.c -o linear_transfer_function.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c normHill.c -o normHill.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c nvector_serial.c -o nvector_serial.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c printAdjMat.c -o printAdjMat.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c printInterMat.c -o printInterMat.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c printNminiTerms.c -o printNminiTerms.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c printTruthTables.c -o printTruthTables.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c rhsODE.c -o rhsODE.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sim_logic_ode.c -o sim_logic_ode.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c simulateODE.c -o simulateODE.o
simulateODE.c: In function 'simulateODE':
simulateODE.c:150: warning: implicit declaration of function 'CVDense'
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_band.c -o sundials_band.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_dense.c -o sundials_dense.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_direct.c -o sundials_direct.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_iterative.c -o sundials_iterative.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_math.c -o sundials_math.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_nvector.c -o sundials_nvector.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_spbcgs.c -o sundials_spbcgs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_spgmr.c -o sundials_spgmr.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I./include -fPIC -mtune=core2 -g -O2 -c sundials_sptfqmr.c -o sundials_sptfqmr.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o CNORode.so cvodea.o cvodea_io.o cvodes.o cvodes_band.o cvodes_bandpre.o cvodes_bbdpre.o cvodes_dense.o cvodes_diag.o cvodes_direct.o cvodes_io.o cvodes_spbcgs.o cvodes_spgmr.o cvodes_spils.o cvodes_sptfqmr.o decimal2binary.o findStates.o fnvector_serial.o getAdjacencyMatrix.o getNumBits.o getNumInputs.o getStateIndex.o getTruthTables.o get_count_bits.o get_input_index.o get_support_truth_tables.o get_truth_tables_index.o hill_function.o linear_transfer_function.o normHill.o nvector_serial.o printAdjMat.o printInterMat.o printNminiTerms.o printTruthTables.o rhsODE.o sim_logic_ode.o simulateODE.o sundials_band.o sundials_dense.o sundials_direct.o sundials_iterative.o sundials_math.o sundials_nvector.o sundials_spbcgs.o sundials_spgmr.o sundials_sptfqmr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/CNORode.buildbin-libdir/CNORode/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'CNORode-vignette.Rnw' using 'UTF-8'
** testing if installed package can be loaded
Warning: ignoring .First.lib() for package 'CNORode'
packaged installation of 'CNORode' as 'CNORode_1.1.4.tgz'
* DONE (CNORode)