| Suggests |
Biobase, S4Vectors, IRanges, S4Arrays, SparseArray, DelayedArray, HDF5Array, GenomicRanges, pwalign, Rsamtools, AnnotationDbi, affy, affyPLM, DESeq2, flowClust, MSnbase, annotate, MultiAssayExperiment, RUnit |
| Linking To |
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| Enhances |
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| Depends On Me |
ACME, affy, affyPLM, altcdfenvs, AnnotationDbi, AnnotationForge, AnnotationHub, bioassayR, Biobase, Biostrings, bnbc, Cardinal, Category, categoryCompare, chipseq, ChIPseqR, cigarillo, codelink, CoreGx, DelayedArray, ExperimentHub, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicRanges, GenomicScores, graph, GSEABase, h5mread, IRanges, ISLET, MBASED, MLInterfaces, mpra, MSnbase, multtest, ngsReports, oligo, pwalign, PWMEnrich, QSutils, Rarr, RPA, rsbml, S4Arrays, S4Vectors, Seqinfo, ShortRead, SparseArray, spqn, TEQC, tigre, topdownr, topGO, UNDO, updateObject, VanillaICE, XVector, yamss, ChAMPdata, rsolr |
| Imports Me |
a4Preproc, affylmGUI, annmap, annotate, AUCell, autonomics, bamsignals, beachmat, Bioc.gff, BiocBook, biocGraph, BiocHail, BiocIO, BiocSingular, biotmle, breakpointR, BrowserViz, cghMCR, ChemmineOB, ChemmineR, chipseq, clusterSeq, cn.mops, CNVPanelizer, cola, CompoundDb, crisprBase, crisprScore, crlmm, csaw, dada2, ddCt, DEGreport, DelayedDataFrame, DESeq2, DEWSeq, DEXSeq, DFplyr, diffcoexp, dinoR, DirichletMultinomial, DiscoRhythm, DRIMSeq, DrugVsDisease, easyRNASeq, EBImage, eiR, eisaR, EnrichDO, epialleleR, epistack, FamAgg, fastseg, flowBin, flowClust, flowCore, flowFP, FlowSOM, flowSpecs, flowStats, flowWorkspace, fmcsR, geneClassifiers, GenomAutomorphism, GenomicAlignments, GenomicTuples, GeomxTools, HDF5Array, heatmaps, hermes, HiCDOC, HiCExperiment, HiContacts, HiCParser, hopach, igvShiny, IHW, InteractionSet, IONiseR, KCsmart, ldblock, matter, meshr, MetaboAnnotation, metaMS, mimager, MinimumDistance, Modstrings, mogsa, monocle, msa, MsBackendSql, MsExperiment, MSnID, MultiAssayExperiment, MultimodalExperiment, mutscan, mzR, NanoStringNCTools, notame, notameViz, npGSEA, nucleR, oligoClasses, openCyto, openPrimeR, parglms, pcaMethods, PDATK, pdInfoBuilder, PharmacoGx, PhIPData, PhosR, phyloseq, piano, PIPETS, profileScoreDist, pRoloc, pRolocGUI, PSMatch, QDNAseq, QFeatures, QTLExperiment, RadioGx, RaggedExperiment, ramr, ramwas, RCy3, RCyjs, ReducedExperiment, RGSEA, RNAseqCovarImpute, rqubic, Rsamtools, rsbml, rScudo, SharedObject, signatureSearch, Site2Target, snpStats, sparrow, Spectra, sRACIPE, sscu, StabMap, strandCheckR, Structstrings, SummarizedExperiment, SynMut, systemPipeR, target, TCseq, ToxicoGx, transite, tRNA, unifiedWMWqPCR, UniProt.ws, universalmotif, uSORT, weitrix, xcms, XDE, XVector, zitools, CENTREannotation, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, CENTREprecomputed, curatedOvarianData, gDNAinRNAseqData, IHWpaper, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, microbiomeDataSets, MouseGastrulationData, MouseThymusAgeing, raerdata, scRNAseq, spatialLIBD, systemPipeRdata, TENxBUSData, VariantToolsData, crispRdesignR, DCLEAR, decompDL, EEMDlstm, geno2proteo, HiCociety, hicream, locuszoomr, RNAseqQC, scPOEM, Signac, TaxaNorm, toxpiR, treediff, TSdeeplearning |
| Suggests Me |
acde, adverSCarial, AIMS, AlphaMissenseR, ASSET, BaalChIP, baySeq, BiocParallel, BiocStyle, biocViews, BLMA, BloodGen3Module, bnem, BUScorrect, CAMERA, CausalR, ccrepe, cellmigRation, chihaya, CHRONOS, ClustAll, clustComp, CNORfeeder, CNORfuzzy, consensus, cosmiq, COSNet, cypress, DEsubs, DExMA, DNAcycP2, epiNEM, fgga, FGNet, flowCut, flowTime, fmrs, GateFinder, gCrisprTools, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, GEOquery, GeoTcgaData, ginmappeR, GMRP, GOstats, GrafGen, GWASTools, h5vc, hierGWAS, HIREewas, hypergraph, iCARE, iClusterPlus, IFAA, illuminaio, immunotation, INPower, IPO, kebabs, KEGGREST, LACE, massiR, MBttest, Mergeomics, MetCirc, MetNet, microbiome, miRBaseConverter, miRcomp, mirIntegrator, mnem, mosbi, MsQuality, multiClust, MultiMed, MultiRNAflow, MWASTools, ncRNAtools, nempi, NetSAM, nondetects, nucleoSim, OncoScore, PAA, panelcn.mops, Path2PPI, PathNet, pathview, pepXMLTab, powerTCR, RBGL, rBiopaxParser, rcellminer, REBET, rfaRm, RGraph2js, Rgraphviz, riboSeqR, ROntoTools, ROSeq, RTN, RTNduals, RTNsurvival, rTRM, sangerseqR, SANTA, sarks, scLANE, screenCounter, segmentSeq, seqPattern, SICtools, sigFeature, sigsquared, SIMAT, similaRpeak, SIMLR, SNPRelate, specL, STATegRa, STRINGdb, SUITOR, systemPipeTools, TCC, TIN, transcriptogramer, traseR, TreeAndLeaf, tripr, tRNAdbImport, TRONCO, variancePartition, VERSO, XAItest, xcore, ENCODExplorerData, geneplast.data, ConnectivityMap, FieldEffectCrc, grndata, HarmanData, healthyControlsPresenceChecker, microRNAome, RegParallel, scMultiome, sesameData, adjclust, aroma.affymetrix, ggpicrust2, gkmSVM, GSEMA, inDAGO, MarZIC, NutrienTrackeR, pagoda2, Platypus, polyRAD, Rediscover, Seurat |
| Links To Me |
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| Build Report |
Build Report |
, Laurent Gatto [ctb]