GA4GHclient
This is the development version of GA4GHclient; for the stable release version, see GA4GHclient.
A Bioconductor package for accessing GA4GH API data servers
Bioconductor version: Development (3.23)
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]
Maintainer: Welliton Souza <well309 at gmail.com>
citation("GA4GHclient")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GA4GHclient")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Software, ThirdPartyClient |
| Version | 1.33.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | GPL (>= 2) |
| Depends | S4Vectors |
| Imports | BiocGenerics, Biostrings, dplyr, Seqinfo, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation |
| System Requirements | |
| URL | https://github.com/labbcb/GA4GHclient |
| Bug Reports | https://github.com/labbcb/GA4GHclient/issues |
See More
| Suggests | GenomeInfoDb, AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GA4GHclient |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GA4GHclient |
| Package Short Url | https://bioconductor.org/packages/GA4GHclient/ |
| Package Downloads Report | Download Stats |