biovizBase
This is the development version of biovizBase; for the stable release version, see biovizBase.
Basic graphic utilities for visualization of genomic data.
Bioconductor version: Development (3.23)
The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.
Author: Tengfei Yin [aut], Michael Lawrence [aut, ths, cre], Dianne Cook [aut, ths], Johannes Rainer [ctb]
Maintainer: Michael Lawrence <lawremi at gmail.com>
citation("biovizBase")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biovizBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Infrastructure, Preprocessing, Software, Visualization |
| Version | 1.57.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (14 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), methods |
| Imports | grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, S4Vectors(>= 0.23.19), IRanges(>= 1.99.28), Seqinfo, GenomeInfoDb(>= 1.45.5), GenomicRanges(>= 1.61.1), SummarizedExperiment(>= 1.39.1), Biostrings(>= 2.77.2), Rsamtools(>= 2.25.1), GenomicAlignments(>= 1.45.1), GenomicFeatures(>= 1.61.4), AnnotationDbi, VariantAnnotation(>= 1.55.1), ensembldb(>= 2.33.1), AnnotationFilter(>= 0.99.8), rlang |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer, EnsDb.Hsapiens.v75, RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/biovizBase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biovizBase |
| Package Short Url | https://bioconductor.org/packages/biovizBase/ |
| Package Downloads Report | Download Stats |