GenomicScores
This is the development version of GenomicScores; for the stable release version, see GenomicScores.
Infrastructure to work with genomewide position-specific scores
Bioconductor version: Development (3.23)
Provide infrastructure to store and access genomewide position-specific scores within R and Bioconductor.
Author: Robert Castelo [aut, cre], Pau Puigdevall [ctb], Pablo RodrÃguez [ctb]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("GenomicScores")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomicScores")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Annotation, AnnotationHubSoftware, Coverage, Genetics, Infrastructure, Sequencing, Software |
| Version | 2.21.4 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5), S4Vectors(>= 0.7.21), GenomicRanges, methods, BiocGenerics(>= 0.13.8) |
| Imports | stats, utils, XML, httr, Biobase, BiocManager, BiocFileCache, IRanges(>= 2.3.23), Biostrings, Seqinfo, GenomeInfoDb(>= 1.45.5), AnnotationHub, rhdf5, DelayedArray, HDF5Array |
| System Requirements | |
| URL | https://github.com/rcastelo/GenomicScores |
| Bug Reports | https://github.com/rcastelo/GenomicScores/issues |
See More
| Suggests | RUnit, BiocStyle, knitr, rmarkdown, VariantAnnotation, gwascat, RColorBrewer, shiny, shinyjs, shinycustomloader, data.table, DT, magrittr, shinydashboard, BSgenome.Hsapiens.UCSC.hg38, phastCons100way.UCSC.hg38, MafDb.1Kgenomes.phase1.hs37d5, MafH5.gnomAD.v4.0.GRCh38, SNPlocs.Hsapiens.dbSNP144.GRCh37, TxDb.Hsapiens.UCSC.hg38.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicScores |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicScores |
| Package Short Url | https://bioconductor.org/packages/GenomicScores/ |
| Package Downloads Report | Download Stats |