igvR
This is the development version of igvR; for the stable release version, see igvR.
igvR: integrative genomics viewer
Bioconductor version: Development (3.23)
Access to igv.js, the Integrative Genomics Viewer running in a web browser.
Author: Paul Shannon
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
Citation (from within R, enter
citation("igvR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("igvR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GenomeBrowsers, Software, ThirdPartyClient, Visualization |
| Version | 1.31.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), GenomicRanges, GenomicAlignments, BrowserViz(>= 2.17.1) |
| Imports | methods, BiocGenerics, httpuv, utils, rtracklayer, VariantAnnotation, RColorBrewer, httr |
| System Requirements | |
| URL | https://gladkia.github.io/igvR/ |
See More
| Suggests | RUnit, BiocStyle, knitr, rmarkdown, MotifDb, seqLogo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/igvR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/igvR |
| Package Short Url | https://bioconductor.org/packages/igvR/ |
| Package Downloads Report | Download Stats |