AIMS
This is the development version of AIMS; for the stable release version, see AIMS.
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Bioconductor version: Development (3.23)
This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.
Author: Eric R. Paquet, Michael T. Hallett
Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>
citation("AIMS")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AIMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), e1071, Biobase |
| Imports | |
| System Requirements | |
| URL | http://www.bci.mcgill.ca/AIMS |
See More
| Suggests | breastCancerVDX, hgu133a.db, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AIMS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AIMS |
| Package Short Url | https://bioconductor.org/packages/AIMS/ |
| Package Downloads Report | Download Stats |