Rqc

This is the development version of Rqc; for the stable release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: Development (3.23)

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("Rqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, QualityControl, Sequencing, Software
Version	1.45.0
In Bioconductor since	BioC 3.0 (R-3.1) (11 years)
License	GPL (>= 2)
Depends	BiocParallel, ShortRead, ggplot2
Imports	BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
System Requirements
URL	https://github.com/labbcb/Rqc
Bug Reports	https://github.com/labbcb/Rqc/issues

Suggests	rmarkdown, testthat
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/Rqc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rqc
Package Short Url	https://bioconductor.org/packages/Rqc/
Package Downloads Report	Download Stats