BioC 3.6: Build/check report for malbec1

a4Base 1.25.0

Tobias Verbeke

a4Classif 1.25.0

Tobias Verbeke

a4Core 1.25.0

Tobias Verbeke

a4Preproc 1.25.0

Tobias Verbeke

a4Reporting 1.25.0

Tobias Verbeke , Willem Ligtenberg

ABAEnrichment 1.7.2

Steffi Grote

ABarray 1.45.0

Yongming Andrew Sun

ABSSeq 1.23.0

Wentao Yang

acde 1.7.0

Juan Pablo Acosta

aCGH 1.55.0

Peter Dimitrov

ACME 2.33.0

Sean Davis

ADaCGH2 2.17.0

Ramon Diaz-Uriarte

adSplit 1.47.0

Claudio Lottaz

affxparser 1.49.0

Kasper Daniel Hansen

affy 1.55.0

Rafael A. Irizarry

affycomp 1.53.0

Rafael A. Irizarry

AffyCompatible 1.37.0

Martin Morgan

affyContam 1.35.0

V. Carey

affycoretools 1.49.4

James W. MacDonald

AffyExpress 1.43.0

Xuejun Arthur Li

affyILM 1.29.0

Myriam Kroll and Fabrice Berger

affyio 1.47.0

Benjamin Milo Bolstad

affylmGUI 1.51.0

Yifang Hu , Gordon Smyth , Keith Satterley

affyPara 1.37.0

Markus Schmidberger

affypdnn 1.51.0

Laurent Gautier

affyPLM 1.53.0

Ben Bolstad

affyQCReport 1.55.0

Craig Parman

AffyRNADegradation 1.23.0

Mario Fasold

AGDEX 1.25.0

Cuilan lani Gao

agilp 3.9.0

Benny Chain

AgiMicroRna 2.27.0

Pedro Lopez-Romero

AIMS 1.9.0

Eric R Paquet

ALDEx2 1.9.1

Greg Gloor

AllelicImbalance 1.15.3

Jesper R Gadin

alpine 1.3.0

Michael Love

alsace 1.13.0

Ron Wehrens

altcdfenvs 2.39.0

Laurent Gautier

AMOUNTAIN 1.3.0

Dong Li

ampliQueso 1.15.0

Michal Okoniewski

AnalysisPageServer 1.11.1

Brad Friedman

anamiR 1.5.5

Ti-Tai Wang

skipped

Anaquin 2.0.0

Ted Wong

AneuFinder 1.5.0

Aaron Taudt

skipped

annaffy 1.49.0

Colin A. Smith

annmap 1.19.0

Chris Wirth

annotate 1.55.0

Bioconductor Package Maintainer

AnnotationDbi 1.39.2

Bioconductor Package Maintainer

AnnotationFilter 1.1.3

Bioconductor Maintainer

AnnotationForge 1.19.4

Bioconductor Package Maintainer

AnnotationFuncs 1.27.0

Stefan McKinnon Edwards

AnnotationHub 2.9.8

Bioconductor Package Maintainer

AnnotationHubData 1.7.8

Bioconductor Package Maintainer

annotationTools 1.51.0

Alexandre Kuhn

annotatr 1.3.2

Raymond G. Cavalcante

anota 1.25.0

Ola Larsson

antiProfiles 1.17.0

Hector Corrada Bravo

apComplex 2.43.0

Denise Scholtens

aroma.light 3.7.0

Henrik Bengtsson

ArrayExpress 1.37.0

Ugis Sarkans

ArrayExpressHTS 1.27.0

Angela Goncalves , Andrew Tikhonov

arrayMvout 1.35.0

V. Carey

arrayQuality 1.55.0

Agnes Paquet

arrayQualityMetrics 3.33.2

Mike Smith

ArrayTools 1.37.0

Arthur Li

ArrayTV 1.15.0

Eitan Halper-Stromberg

ARRmNormalization 1.17.0

Jean-Philippe Fortin

ASAFE 1.3.0

Qian Zhang

ASEB 1.21.0

Likun Wang

ASGSCA 1.11.0

Hela Romdhani

ASpli 1.3.1

Estefania Mancini , Javier Iserte

ASSET 1.15.0

William Wheeler

ASSIGN 1.13.0

Ying Shen , W. Evan Johnson

ATACseqQC 1.1.5

Jianhong Ou

attract 1.29.1

Samuel Zimmerman

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BaalChIP 1.3.0

Ines de Santiago

BAC 1.37.0

Raphael Gottardo

bacon 1.5.0

Maarten van Iterson

BADER 1.15.0

Andreas Neudecker

BadRegionFinder 1.5.0

Sarah Sandmann

BAGS 2.17.0

Alejandro Quiroz-Zarate

ballgown 2.9.4

Jack Fu

bamsignals 1.9.0

Alessandro Mammana

banocc 1.1.0

Emma Schwager

basecallQC 1.1.1

Thomas Carroll

BaseSpaceR 1.21.0

Jared O'Connell

Basic4Cseq 1.13.1

Carolin Walter

BasicSTARRseq 1.5.0

Annika Buerger

BatchQC 1.5.0

Solaiappan Manimaran

BayesKnockdown 1.3.0

William Chad Young

BayesPeak 1.29.0

Jonathan Cairns

baySeq 2.11.0

Thomas J. Hardcastle

BBCAnalyzer 1.7.0

Sarah Sandmann

BCRANK 1.39.0

Adam Ameur

beachmat 0.99.12

Aaron Lun

beadarray 2.27.1

Mark Dunning

beadarraySNP 1.43.0

Jan Oosting

BeadDataPackR 1.29.0

Mike Smith

BEAT 1.15.0

Kemal Akman

BEclear 1.9.0

Markus Merl

bgafun 1.39.0

Iain Wallace

BgeeDB 2.3.3

Julien Wollbrett , Julien Roux , Andrea Komljenovic , Frederic Bastian

BGmix 1.37.0

Alex Lewin

bgx 1.43.0

Ernest Turro

BHC 1.29.0

Rich Savage

BicARE 1.35.0

Pierre Gestraud

BiGGR 1.13.0

Anand K. Gavai

bigmelon 1.3.0

Tyler J. Gorrie-Stone

bigmemoryExtras 1.23.0

Peter M. Haverty

bioassayR 1.15.0

Tyler Backman

Biobase 2.37.2

Bioconductor Package Maintainer

biobroom 1.9.0

John D. Storey and Andrew J. Bass

bioCancer 1.5.04

Karim Mezhoud

BiocCaseStudies 1.39.0

Bioconductor Package Maintainer

BiocCheck 1.13.1

Bioconductor Package Maintainer

BiocFileCache 1.1.15

Lori Shepherd

BiocGenerics 0.23.0

Bioconductor Package Maintainer

biocGraph 1.39.0

Florian Hahne

BiocInstaller 1.27.3

Bioconductor Package Maintainer

BioCor 1.1.2

Lluís Revilla Sancho

BiocParallel 1.11.6

Bioconductor Package Maintainer

BiocSklearn 0.0.8

VJ Carey

BiocStyle 2.5.18

Bioconductor Package Maintainer

biocViews 1.45.0

Bioconductor Package Maintainer

BiocWorkflowTools 1.3.11

Mike Smith

bioDist 1.49.0

Bioconductor Package Maintainer

biomaRt 2.33.4

Steffen Durinck

BioMedR 1.1.0

Min-feng Zhu

biomformat 1.5.0

Paul J. McMurdie

BioMVCClass 1.45.0

Elizabeth Whalen

biomvRCNS 1.17.0

Yang Du

BioNet 1.37.0

Marcus Dittrich

BioQC 1.5.1

Jitao David Zhang

BioSeqClass 1.35.0

Li Hong

biosigner 1.5.0

Philippe Rinaudo , Etienne Thevenot

Biostrings 2.45.3

H. Pagès

biosvd 2.13.0

Anneleen Daemen , Matthew Brauer

biotmle 1.1.0

Nima Hejazi

biovizBase 1.25.1

Michael Lawrence

BiRewire 3.9.1

Andrea Gobbi

birta 1.21.0

Benedikt Zacher

birte 1.13.0

Holger Froehlich

BiSeq 1.17.1

Katja Hebestreit

BitSeq 1.21.0

Antti Honkela , Panagiotis Papastamoulis

blima 1.11.0

Vojtěch Kulvait

BLMA 1.1.0

Tin Nguyen

BPRMeth 1.3.0

Chantriolnt-Andreas Kapourani

BRAIN 1.23.0

Piotr Dittwald

BrainStars 1.21.0

Itoshi NIKAIDO

branchpointer 1.3.1

Beth Signal

bridge 1.41.0

Raphael Gottardo

BridgeDbR 1.11.0

Egon Willighagen

BrowserViz 1.9.0

Paul Shannon

BrowserVizDemo 1.9.1

Paul Shannon

BSgenome 1.45.1

H. Pagès

bsseq 1.13.6

Kasper Daniel Hansen

BubbleTree 2.7.1

Todd Creasy , Wei Zhu

BufferedMatrix 1.41.0

Benjamin Milo Bolstad

BufferedMatrixMethods 1.41.0

B. M. Bolstad

BUMHMM 1.1.0

Alina Selega

bumphunter 1.17.2

Rafael A. Irizarry

BUS 1.33.0

Yuanhua Liu

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CAFE 1.13.0

Sander Bollen

CAGEr 1.19.0

Vanja Haberle , Charles Plessy

CALIB 1.43.0

Hui Zhao

CAMERA 1.33.0

Steffen Neumann

canceR 1.9.0

Karim Mezhoud

cancerclass 1.21.0

Daniel Kosztyla

CancerInSilico 1.3.0

Thomas D. Sherman , Elana J. Fertig

CancerMutationAnalysis 1.19.0

Simina M. Boca

CancerSubtypes 1.3.7

Taosheng Xu

CAnD 1.9.0

Caitlin McHugh

caOmicsV 1.7.0

Henry Zhang

Cardinal 1.9.0

Kylie A. Bemis

casper 2.11.0

David Rossell

CATALYST 1.1.5

Helena Lucia Crowell

Category 2.43.2

Bioconductor Package Maintainer

categoryCompare 1.21.0

Robert M. Flight

CausalR 1.9.0

Glyn Bradley , Steven Barrett

ccmap 1.3.0

Alex Pickering

CCPROMISE 1.3.0

Xueyuan Cao

ccrepe 1.13.0

Emma Schwager ,Craig Bielski, George Weingart

cellbaseR 1.1.1

Mohammed OE Abdallah

skipped

cellGrowth 1.21.0

Julien Gagneur

cellHTS2 2.41.0

Joseph Barry

cellity 1.5.0

Tomislav Ilicic

CellMapper 1.3.0

Brad Nelms

CellNOptR 1.23.0

T.Cokelaer

cellscape 1.1.0

Maia Smith

cellTree 1.7.0

David duVerle

CEMiTool 0.99.8

Helder Nakaya

CexoR 1.15.0

Pedro Madrigal

CFAssay 1.11.0

Herbert Braselmann

CGEN 3.13.0

William Wheeler

CGHbase 1.37.0

Mark van de Wiel

CGHcall 2.39.0

Mark van de Wiel

cghMCR 1.35.0

J. Zhang

CGHnormaliter 1.31.0

Bart P.P. van Houte

CGHregions 1.35.0

Sjoerd Vosse

ChAMP 2.9.9

Yuan Tian

charm 2.23.0

Peter Murakami

ChemmineOB 1.15.1

Thomas Girke

ChemmineR 2.29.3

Thomas Girke

Chicago 1.5.0

Mikhail Spivakov

chimera 1.19.0

Raffaele A Calogero

chimeraviz 1.2.2

Stian Lågstad

ChIPComp 1.7.0

Li Chen

chipenrich 2.1.1

Raymond G. Cavalcante

ChIPexoQual 1.1.0

Rene Welch

ChIPpeakAnno 3.11.4

Lihua Julie Zhu

ChIPQC 1.13.2

Tom Carroll , Rory Stark

ChIPseeker 1.13.1

Guangchuang Yu

chipseq 1.27.0

Bioconductor Package Maintainer

ChIPseqR 1.31.0

Peter Humburg

ChIPsim 1.31.0

Peter Humburg

ChIPXpress 1.19.0

George Wu

chopsticks 1.41.0

Hin-Tak Leung

chroGPS 1.25.0

Oscar Reina

chromDraw 2.7.0

Jan Janecka

ChromHeatMap 1.31.0

Tim F. Rayner

chromPlot 1.5.0

Karen Y. Orostica

chromstaR 1.3.1

Aaron Taudt

skipped

CHRONOS 1.5.0

Panos Balomenos

CINdex 1.5.0

Yuriy Gusev

cisPath 1.17.0

Likun Wang

ClassifyR 1.11.2

Dario Strbenac

cleanUpdTSeq 1.15.0

Sarah Sheppard ; Jianhong Ou

cleaver 1.15.1

Sebastian Gibb

clippda 1.27.0

Stephen Nyangoma

clipper 1.17.0

Paolo Martini

Clomial 1.13.0

Habil Zare

Clonality 1.25.0

Irina Ostrovnaya

clonotypeR 1.15.0

Charles Plessy

clst 1.25.0

Noah Hoffman

clstutils 1.25.0

Noah Hoffman

clustComp 1.5.2

Aurora Torrente

clusterExperiment 1.3.2

Elizabeth Purdom

ClusterJudge 0.99.3

Adrian Pasculescu

clusterProfiler 3.5.5

Guangchuang Yu

clusterSeq 1.1.0

Thomas J. Hardcastle

ClusterSignificance 1.5.3

Jason T Serviss

clusterStab 1.49.0

James W. MacDonald

CMA 1.35.0

Christoph Bernau

cn.farms 1.25.0

Andreas Mitterecker

cn.mops 1.23.0

Guenter Klambauer

CNAnorm 1.23.0

Stefano Berri

CNEr 1.13.2

Ge Tan

CNORdt 1.19.0

A. MacNamara

CNORfeeder 1.17.0

F.Eduati

CNORfuzzy 1.19.0

T. Cokelaer

CNORode 1.19.0

David Henriques

CNPBayes 1.7.1

Jacob Carey

CNTools 1.33.0

J. Zhang

cnvGSA 1.21.0

Joseph Lugo

CNVPanelizer 1.7.0

Thomas Wolf

CNVrd2 1.15.0

Hoang Tan Nguyen

CNVtools 1.71.0

Chris Barnes

cobindR 1.15.0

Manuela Benary

CoCiteStats 1.49.0

Bioconductor Package Maintainer

codelink 1.45.0

Diego Diez

CODEX 1.9.0

Yuchao Jiang

coexnet 0.99.21

Juan David Henao

CoGAPS 2.11.0

Elana J. Fertig

cogena 1.11.0

Zhilong Jia

coGPS 1.21.0

Yingying Wei

COHCAP 1.21.6

Charles Warden

coMET 1.9.0

Tiphaine Martin

COMPASS 1.15.1

Greg Finak

compcodeR 1.13.0

Charlotte Soneson

compEpiTools 1.11.0

Kamal Kishore

CompGO 1.13.0

Ashley J. Waardenberg

ComplexHeatmap 1.15.0

Zuguang Gu

CONFESS 1.5.0

Diana LOW

ConsensusClusterPlus 1.41.0

Matt Wilkerson

consensusOV 0.99.3

Benjamin Haibe-Kains

consensusSeekeR 1.5.0

Astrid Deschenes

contiBAIT 1.5.0

Kieran O'Neill

conumee 1.11.0

Volker Hovestadt

convert 1.53.0

Yee Hwa (Jean) Yang

copa 1.45.0

James W. MacDonald

copynumber 1.17.0

Gro Nilsen

CopywriteR 2.9.0

Thomas Kuilman

CoRegNet 1.13.0

Remy Nicolle

Cormotif 1.23.0

Yingying Wei

CorMut 1.19.0

Zhenpeng Li

CORREP 1.43.0

Dongxiao Zhu

coseq 1.1.2

Andrea Rau

cosmiq 1.11.4

David Fischer , Christian Panse

COSNet 1.11.0

Marco Frasca

CountClust 1.3.0

Kushal Dey

covEB 1.3.0

C. Pacini

CoverageView 1.14.0

Ernesto Lowy

covRNA 1.3.0

Lara Urban

cpvSNP 1.9.0

Caitlin McHugh

cqn 1.23.0

Kasper Daniel Hansen

CRImage 1.25.0

Henrik Failmezger , Yinyin Yuan

CRISPRseek 1.17.0

Lihua Julie Zhu

crisprseekplus 1.3.0

Alper Kucukural

CrispRVariants 1.5.3

Helen Lindsay

crlmm 1.35.0

Benilton S Carvalho

crossmeta 1.3.0

Alex Pickering

CSAR 1.29.0

Jose M Muino

csaw 1.11.1

Aaron Lun

CSSP 1.15.0

Chandler Zuo

ctc 1.51.0

Antoine Lucas

ctsGE 1.3.0

Michal Sharabi-Schwager

cummeRbund 2.19.1

Loyal A. Goff

customProDB 1.17.0

xiaojing wang

CVE 1.3.0

Andreas Mock

cycle 1.31.0

Matthias Futschik

cydar 1.1.1

Aaron Lun

cytofkit 1.9.1

Jinmiao Chen , Hao Chen , Matthew Myint

CytoML 1.3.1

Mike Jiang

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dada2 1.5.0

Benjamin Callahan

dagLogo 1.15.0

Jianhong Ou

daMA 1.49.0

Jobst Landgrebe

DaMiRseq 1.1.0

Mattia Chiesa

DAPAR 1.9.5

Samuel Wieczorek

DART 1.25.0

Charles Shijie Zheng

DASC 0.99.11

Haidong Yi

skipped

DBChIP 1.21.0

Kun Liang

dcGSA 1.5.0

Jiehuan sun

DChIPRep 1.7.1

Bernd Klaus

ddCt 1.33.1

Jitao David Zhang

ddgraph 1.21.0

Robert Stojnic

debrowser 1.5.4

Alper Kucukural

DECIPHER 2.5.0

Erik Wright

DeconRNASeq 1.19.0

Ting Gong

DEDS 1.51.0

Yuanyuan Xiao

DeepBlueR 1.3.10

Felipe Albrecht , Markus List

deepSNV 1.23.0

Moritz Gerstung

DEFormats 1.5.0

Andrzej Oleś

DEGraph 1.29.0

Laurent Jacob

DEGreport 1.13.8

Lorena Pantano

DEGseq 1.31.0

Likun Wang

DelayedArray 0.3.19

Hervé Pagès

deltaGseg 1.17.0

Diana Low

DeMAND 1.7.0

Jung Hoon Woo , Mariano Alvarez

derfinder 1.11.6

Leonardo Collado-Torres

derfinderHelper 1.11.1

Leonardo Collado-Torres

derfinderPlot 1.11.1

Leonardo Collado-Torres

DESeq 1.29.0

Simon Anders

DESeq2 1.17.13

Michael Love

destiny 2.5.6

Philipp Angerer

DEsubs 1.3.1

Aristidis G. Vrahatis , Panos Balomenos

DEXSeq 1.23.1

Alejandro Reyes

dexus 1.17.0

Guenter Klambauer

DFP 1.35.0

Rodrigo Alvarez-Glez

DiffBind 2.5.8

Rory Stark

diffGeneAnalysis 1.59.0

Choudary Jagarlamudi

diffHic 1.9.4

Aaron Lun

DiffLogo 2.00.1

Hendrik Treutler

diffloop 1.5.0

Caleb Lareau

diffuStats 0.99.12

Sergio Picart-Armada

diggit 1.9.0

Mariano J Alvarez

Director 1.3.1

Katherine Icay

DirichletMultinomial 1.19.0

Martin Morgan

discordant 1.1.0

Charlotte Siska

dks 1.23.0

Jeffrey T. Leek

DMRcaller 1.9.0

Nicolae Radu Zabet

DMRcate 1.13.0

Tim Peters

DMRforPairs 1.13.0

Martin Rijlaarsdam

DMRScan 1.1.0

Christian M Page

DNABarcodes 1.7.0

Tilo Buschmann

DNAcopy 1.51.0

Venkatraman E. Seshan

DNAshapeR 0.99.8

Tsu-Pei Chiu

~~domainsignatures~~ 1.37.0

Florian Hahne

skipped

doppelgangR 1.5.1

Levi Waldron

DOQTL 1.13.0

Daniel Gatti

DOSE 3.3.1

Guangchuang Yu

DRIMSeq 1.5.1

Malgorzata Nowicka

DriverNet 1.17.0

Jiarui Ding

DrugVsDisease 2.17.1

j. Saez-Rodriguez

TIMEOUT

dSimer 1.3.0

Peng Ni

DSS 2.18.0

Hao Wu

DTA 2.23.0

Bjoern Schwalb

dualKS 1.37.0

Eric J. Kort

DupChecker 1.15.0

"Quanhu SHENG"

dupRadar 1.7.0

Sergi Sayols , Holger Klein

dyebias 1.37.0

Philip Lijnzaad

DynDoc 1.55.0

Bioconductor Package Maintainer

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EasyqpcR 1.19.0

Le Pape Sylvain

easyRNASeq 2.13.1

Nicolas Delhomme

EBarrays 2.41.0

Ming Yuan

EBcoexpress 1.21.0

John A. Dawson

EBImage 4.19.8

Andrzej Oleś

EBSEA 1.5.0

Arfa Mehmood

EBSeq 1.17.0

Ning Leng

EBSeqHMM 1.11.0

Ning Leng

ecolitk 1.49.0

Laurent Gautier

EDASeq 2.11.0

Davide Risso

EDDA 1.15.0

Chia Kuan Hui Burton , Niranjan Nagarajan

edge 2.9.0

John D. Storey , Andrew J. Bass

edgeR 3.19.3

Yunshun Chen , Aaron Lun , Mark Robinson , Davis McCarthy , Gordon Smyth

eegc 1.3.0

Xiaoyuan Zhou

EGAD 1.5.1

Sara Ballouz

EGSEA 1.5.4

Monther Alhamdoosh

eiR 1.17.1

Thomas Girke

eisa 1.29.0

Gabor Csardi

ELBOW 1.13.0

Graham Alvare , Xiangli Zhang

ELMER 2.0.4

Tiago Chedraoui Silva

EMDomics 2.7.0

Sadhika Malladi and Daniel Schmolze

EmpiricalBrownsMethod 1.5.0

David Gibbs

ENCODExplorer 2.3.0

Charles Joly Beauparlant

ENmix 1.13.9

Zongli Xu

skipped

EnrichedHeatmap 1.7.0

Zuguang Gu

EnrichmentBrowser 2.7.3

Ludwig Geistlinger

ensembldb 2.1.11

Johannes Rainer

ensemblVEP 1.17.0

Bioconductor Package Maintainer

ENVISIONQuery 1.25.0

Alex Lisovich , Roger Day

EpiDISH 0.99.4

Shijie Charles Zheng

epigenomix 1.17.1

Hans-Ulrich Klein

epiNEM 1.1.1

Martin Pirkl

epivizr 2.7.0

Hector Corrada Bravo

epivizrChart 0.99.2

Hector Corrada Bravo

epivizrData 1.5.1

Hector Corrada Bravo

epivizrServer 1.5.0

Hector Corrada Bravo

epivizrStandalone 1.5.0

Hector Corrada Bravo

erccdashboard 1.11.0

Sarah Munro

erma 0.9.2

VJ Carey

esetVis 1.3.0

Laure Cougnaud

eudysbiome 1.7.0

Xiaoyuan Zhou

EventPointer 1.1.0

Juan Pablo Romero

~~EWCE~~ 1.5.1

Nathan Skene

skipped

ExiMiR 2.19.0

Sylvain Gubian

exomeCopy 1.23.2

Michael Love

exomePeak 2.11.0

Lin Zhang , Lian Liu , Jia Meng

ExperimentHub 1.3.0

Bioconductor Package Maintainer

ExperimentHubData 1.3.3

Bioconductor Package Maintainer

explorase 1.41.0

Michael Lawrence

ExpressionAtlas 1.5.0

Maria Keays

ExpressionView 1.29.0

Gabor Csardi

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fabia 2.23.0

Sepp Hochreiter

facopy 1.11.0

David Mosen-Ansorena

factDesign 1.53.0

Denise Scholtens

FamAgg 1.5.1

Johannes Rainer

farms 1.29.0

Djork-Arne Clevert

fastLiquidAssociation 1.13.0

Tina Gunderson

fastseg 1.23.0

Guenter Klambauer

fCCAC 1.3.0

Pedro Madrigal

fCI 1.7.0

Shaojun Tang

fdrame 1.49.0

Effi Kenigsberg

FEM 3.5.0

Zhen Yang

ffpe 1.21.0

Levi Waldron

FGNet 3.11.0

Sara Aibar

fgsea 1.3.1

Alexey Sergushichev

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Thomas Lin Pedersen

FISHalyseR 1.11.0

Karesh Arunakirinathan

FitHiC 1.3.0

Ruyu Tan

flagme 1.33.0

Mark Robinson , Riccardo Romoli

flipflop 1.15.0

Elsa Bernard

flowAI 1.5.0

Gianni Monaco

flowBeads 1.15.0

Nikolas Pontikos

flowBin 1.13.0

Kieran O'Neill

flowcatchR 1.11.0

Federico Marini

flowCHIC 1.11.0

Author: Joachim Schumann

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flowClean 1.15.0

Kipper Fletez-Brant

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Greg Finak , Mike Jiang

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M.Jiang

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flowFit 1.15.0

Davide Rambaldi

flowFP 1.35.0

Herb Holyst

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Chiaowen Joyce Hsiao

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Ariful Azad

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Nima Aghaeepour

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Greg Finak

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Yongchao Ge

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Tyler Smith

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N. Hawkins

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Mike Jiang

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Josef Spidlen

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Sofie Van Gassen

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R. Clay Wright

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Greg Finak

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Nima Aghaeepour

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Josef Spidlen

flowViz 1.41.0

Mike Jiang

flowVS 1.9.0

Ariful Azad

flowWorkspace 3.25.7

Greg Finak ,Mike Jiang

fmcsR 1.19.0

Thomas Girke

focalCall 1.11.0

Oscar Krijgsman

FourCSeq 1.11.1

Felix A. Klein

FRGEpistasis 1.13.0

Futao Zhang

frma 1.29.0

Matthew N. McCall

frmaTools 1.29.0

Matthew N. McCall

FunChIP 1.3.0

Alice Parodi

FunciSNP 1.21.0

Simon G. Coetzee

funtooNorm 1.1.0

Kathleen Klein

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GA4GHclient 1.1.1

Welliton Souza

GA4GHshiny 0.99.5

Welliton Souza

gaga 2.23.0

David Rossell

gage 2.27.1

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S. Morganella

GAprediction 1.3.0

Jon Bohlin

garfield 1.5.0

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gaucho 1.13.0

Alex Murison

gcapc 1.1.9

Mingxiang Teng

gcatest 1.7.0

Wei Hao , John D. Storey

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gCMAPWeb 1.17.0

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gCrisprTools 1.5.5

Peter Haverty

gcrma 2.49.0

Z. Wu

gdsfmt 1.13.1

Xiuwen Zheng

geecc 1.11.0

Markus Boenn

GEM 1.3.0

Hong Pan

genArise 1.53.0

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genbankr 1.5.0

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GeneAnswers 2.19.0

Lei Huang and Gang Feng

geneAttribution 1.3.0

Arthur Wuster

GeneBreak 1.7.0

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geneClassifiers 1.1.0

R Kuiper

GeneExpressionSignature 1.23.0

Yang Cao , Fei Li

genefilter 1.59.0

Bioconductor Package Maintainer

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Benjamin Haibe-Kains , Markus Schroeder

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Jianhong Ou

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Matthew P. Conomos , Stephanie M. Gogarten

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Sara Aibar

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The R Genetics Project

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David Henderson

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Van Anh Huynh-Thu

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Wei Sun

GenoGAM 1.5.4

Georg Stricker

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genomation 1.9.3

Altuna Akalin , Vedran Franke

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Steffen Durinck

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Bioconductor Package Maintainer

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Julien Gagneur

genomes 3.7.0

Chris Stubben

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Bioconductor Package Maintainer

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Davis Sean

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Bioconductor Package Maintainer

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Bioconductor Package Maintainer

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Malcolm Perry

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Bioconductor Package Maintainer

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Robert Castelo

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Peter Hickey

Genominator 1.31.0

James Bullard

genoset 1.33.1

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genotypeeval 1.9.0

Jennifer Tom

genphen 1.5.0

Simo Kitanovski

GenRank 1.5.0

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Zachary Skidmore

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Jack Zhu

GEOquery 2.43.0

Sean Davis

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Alexandre Kuhn

gespeR 1.9.0

Fabian Schmich

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Wei Q. Deng

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VJ Carey

ggbio 1.25.3

Michael Lawrence

ggcyto 1.5.3

Mike Jiang

GGtools 5.13.1

VJ Carey

ggtree 1.9.2

Guangchuang Yu

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J. Toedling

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Bhakti Dwivedi

GLAD 2.41.0

Philippe Hupe

Glimma 1.5.0

Shian Su

GlobalAncova 3.45.0

Manuela Hummel

globalSeq 1.5.2

Armin Rauschenberger

globaltest 5.31.0

Jelle Goeman

gmapR 1.19.1

Michael Lawrence

GMRP 1.5.0

Yuan-De Tan

GOexpress 1.11.0

Kevin Rue-Albrecht

GOFunction 1.25.0

Jing Wang

GoogleGenomics 1.99.1

Siddhartha Bagaria

GOpro 1.3.0

Lidia Chrabaszcz

goProfiles 1.39.0

Alex Sanchez

GOSemSim 2.3.1

Guangchuang Yu

goseq 1.29.0

Nadia Davidson , Anthony Hawkins

GOSim 1.15.0

Holger Froehlich

goSTAG 1.1.3

Brian D. Bennett

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Bioconductor Package Maintainer

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Bioconductor Package Maintainer

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VJ Carey

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VJ Carey

graph 1.55.0

Bioconductor Package Maintainer

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Joern P. Meier

GraphAT 1.49.0

Thomas LaFramboise

graphite 1.23.2

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Gregory Ryslik

GRENITS 1.29.0

Edward Morrissey

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Gordon Brown

GRmetrics 1.3.3

Nicholas Clark , Mario Medvedovic

groHMM 1.11.0

Anusha Nagari , Venkat Malladi , Tulip Nandu , W. Lee Kraus

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Mark A. van de Wiel

GSALightning 1.5.0

Billy Heung Wing Chang

GSAR 1.11.1

Yasir Rahmatallah , Galina Glazko

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Zhicheng Ji

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Bioconductor Package Maintainer

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Assaf Oron

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Bahman Afsari , Elana J. Fertig

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Justin Guinney

gtrellis 1.9.1

Zuguang Gu

GUIDEseq 1.7.3

Lihua Julie Zhu

Guitar 1.15.0

Jia Meng

Gviz 1.21.1

Florian Hahne

gwascat 2.9.1

VJ Carey

GWASTools 1.23.0

Stephanie M. Gogarten , Adrienne Stilp

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h5vc 2.11.0

Paul Theodor Pyl

hapFabia 1.19.0

Sepp Hochreiter

Harman 1.5.0

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Askar Obulkasim

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HelloRanges 1.3.1

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Reid F. Thompson

HEM 1.49.0

HyungJun Cho

hiAnnotator 1.11.0

Nirav V Malani

HIBAG 1.13.2

Xiuwen Zheng

HiCcompare 0.99.13

John Stansfield

hicrep 1.1.0

Tao Yang

hierGWAS 1.7.0

Laura Buzdugan

HilbertCurve 1.7.0

Zuguang Gu

HilbertVis 1.35.0

Simon Anders

HilbertVisGUI 1.35.0

Simon Anders

hiReadsProcessor 1.13.0

Nirav V Malani

HiTC 1.21.0

Nicolas Servant

HMMcopy 1.19.0

Daniel Lai , Sohrab Shah

hopach 2.37.0

Katherine S. Pollard

hpar 1.19.1

Laurent Gatto

HTqPCR 1.31.0

Heidi Dvinge

HTSanalyzeR 2.29.0

Xin Wang

HTSeqGenie 4.7.0

Jens Reeder

htSeqTools 1.25.0

Oscar Reina

HTSFilter 1.17.1

Andrea Rau

HybridMTest 1.21.0

Demba Fofana

hyperdraw 1.29.0

Paul Murrell

hypergraph 1.49.0

Bioconductor Package Maintainer

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iASeq 1.21.0

Yingying Wei

iBBiG 1.21.0

Aedin Culhane

ibh 1.25.0

Kircicegi Korkmaz

iBMQ 1.17.0

Greg Imholte

iCARE 1.5.0

Bill Wheeler

Icens 1.49.0

Bioconductor Package Maintainer

iCheck 1.7.0

Weiliang Qiu

iChip 1.31.0

Qianxing Mo

iClusterPlus 1.13.0

Qianxing Mo , Ronglai Shen

iCOBRA 1.5.0

Charlotte Soneson

ideal 1.1.0

Federico Marini

IdeoViz 1.11.0

Shraddha Pai

idiogram 1.53.0

Karl J. Dykema

IdMappingAnalysis 1.21.0

Alex Lisovich , Roger Day

~~IdMappingRetrieval~~ 1.25.1

Alex Lisovich , Roger Day

iGC 1.7.0

Liang-Bo Wang

IHW 1.5.0

Nikos Ignatiadis

illuminaio 0.19.0

Kasper Daniel Hansen

imageHTS 1.27.0

Joseph Barry

IMAS 1.1.0

Seonggyun Han

Imetagene 1.7.0

Audrey Lemacon

ImmuneSpaceR 1.5.0

ImmuneSpace Package Maintainer

immunoClust 1.9.1

Till Soerensen

IMPCdata 1.11.0

Jeremy Mason

ImpulseDE 1.3.0

Jil Sander , Nir Yosef

ImpulseDE2 1.1.0

David S Fischer

impute 1.51.0

Balasubramanian Narasimhan

InPAS 1.9.0

Jianhong Ou

INPower 1.13.0

Bill Wheeler

INSPEcT 1.7.1

Stefano de Pretis

intansv 1.17.1

Wen Yao

InteractionSet 1.5.3

Aaron Lun

interactiveDisplay 1.15.0

Shawn Balcome

interactiveDisplayBase 1.15.0

Shawn Balcome

IntEREst 1.1.3

Ali Oghabian , Mikko Frilander

IntramiRExploreR 0.99.8

Surajit Bhattacharya

inveRsion 1.25.0

Alejandro Caceres

IONiseR 2.1.0

Mike Smith

iontree 1.23.0

Mingshu Cao

iPAC 1.21.1

Gregory Ryslik

IPO 1.3.1

Thomas Riebenbauer

IPPD 1.25.0

Martin Slawski

IRanges 2.11.12

Bioconductor Package Maintainer

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Qianxing Mo

isobar 1.23.0

Florian P Breitwieser

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Setia Pramana

ISoLDE 1.5.0

Christelle Reynès

isomiRs 1.5.4

Lorena Pantano

ITALICS 2.37.0

Guillem Rigaill

iterativeBMA 1.35.0

Ka Yee Yeung

iterativeBMAsurv 1.35.0

Ka Yee Yeung

IVAS 1.97.0

Seonggyun Han

IWTomics 1.1.3

Marzia A Cremona

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joda 1.25.0

Ewa Szczurek

JunctionSeq 1.7.0

Stephen Hartley

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karyoploteR 1.1.9

Bernat Gel

KCsmart 2.35.0

Jorma de Ronde

kebabs 1.11.0

Ulrich Bodenhofer

KEGGgraph 1.37.2

Jitao David Zhang

KEGGlincs 1.3.2

Shana White , Mario Medvedovic

keggorthology 2.29.0

VJ Carey

KEGGprofile 1.19.1

Shilin Zhao

KEGGREST 1.17.1

Bioconductor Package Maintainer

kimod 1.5.0

M L Zingaretti

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lapmix 1.43.0

Yann Ruffieux

LBE 1.45.0

Cyril Dalmasso

ldblock 1.7.4

VJ Carey

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les 1.27.0

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Wei Hao , John D. Storey

limma 3.33.7

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Yifang Hu , Gordon Smyth , Keith Satterley

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Blythe Durbin-Johnson

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logitT 1.35.0

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lumi 2.29.0

Pan Du , Lei Huang , Gang Feng

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LymphoSeq 1.5.0

David Coffey

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M3D 1.11.0

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M3Drop 1.3.0

Tallulah Andrews

maanova 1.47.0

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macat 1.51.0

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made4 1.51.0

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Yee Hwa (Jean) Yang

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Maria Jose Nueda

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Reid F. Thompson

massiR 1.13.0

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Pan Du

MAST 1.3.1

Andrew McDavid

matchBox 1.19.0

Luigi Marchionni , Anuj Gupta

MatrixRider 1.9.0

Elena Grassi

matter 1.3.3

Kylie A. Bemis

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Jan Sauer

MBAmethyl 1.11.0

Tao Wang

MBASED 1.11.0

Oleg Mayba

MBCB 1.31.0

Jeff Allen

mBPCR 1.31.0

P.M.V. Rancoita

MBttest 1.5.0

Yuan-De Tan

mcaGUI 1.25.0

Wade K. Copeland

MCbiclust 1.1.4

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MeasurementError.cor 1.49.0

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MEDIPS 1.29.0

Lukas Chavez

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MEIGOR 1.11.0

Jose Egea

MergeMaid 2.49.0

Xiaogang Zhong

Mergeomics 1.5.0

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Koki Tsuyuzaki

meshes 1.3.0

Guangchuang Yu

meshr 1.13.0

Koki Tsuyuzaki

messina 1.13.0

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Hyungwon Choi

Metab 1.11.0

Raphael Aggio

metabomxtr 1.11.1

Michael Nodzenski

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Andrea Rodriguez-Martinez

metaCCA 1.5.0

Anna Cichonska

metagene 2.9.1

Charles Joly Beauparlant

metagenomeFeatures 1.9.1

Nathan D. Olson

metagenomeSeq 1.19.0

Joseph N. Paulson

metahdep 1.35.0

John R. Stevens

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Ron Wehrens

metaSeq 1.17.0

Koki Tsuyuzaki

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metavizr 1.1.2

Hector Corrada Bravo

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Pascal Belleau

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Muhammad Ahmer Jamil

methVisual 1.29.0

Arie Zackay

methyAnalysis 1.19.1

Pan Du , Lei Huang , Gang Feng

MethylAid 1.11.1

M. van Iterson

methylInheritance 1.1.0

Astrid Deschenes

methylKit 1.3.0

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MethylMix 2.5.1

Olivier Gevaert

methylMnM 1.15.0

Yan Zhou

methylPipe 1.11.1

Kamal Kishore

MethylSeekR 1.17.0

Lukas Burger

methylumi 2.23.0

Sean Davis

mfa 0.99.2

Kieran Campbell

Mfuzz 2.37.0

Matthias Futschik

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Khadija El Amrani

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Khadija El Amrani

mgsa 1.25.1

Sebastian Bauer

MiChip 1.31.0

Jonathon Blake

microRNA 1.35.2

"James F. Reid"

MIGSA 1.1.1

Juan C. Rodriguez

mimager 1.1.0

Aaron Wolen

MIMOSA 1.15.0

Greg Finak

MineICA 1.17.0

Anne Biton

minet 3.35.0

Patrick E. Meyer

minfi 1.23.3

Kasper Daniel Hansen

MinimumDistance 1.21.2

Robert B Scharpf

MiPP 1.49.0

Sukwoo Kim

MiRaGE 1.19.0

Y-h. Taguchi

miRBaseConverter 0.99.12

Taosheng Xu

miRcomp 1.7.0

Matthew N. McCall

mirIntegrator 1.7.0

Diana Diaz

miRLAB 1.7.0

Thuc Duy Le

miRNAmeConverter 1.5.0

Stefan J. Haunsberger

miRNApath 1.37.0

James M. Ward

miRNAtap 1.11.0

Maciej Pajak

Mirsynergy 1.13.0

Yue Li

missMethyl 1.11.0

Belinda Phipson

mitoODE 1.15.0

Gregoire Pau

MLInterfaces 1.57.0

V. Carey

MLP 1.25.0

Tobias Verbeke

MLSeq 1.17.0

Gokmen Zararsiz

MMDiff2 1.5.0

Gabriele Schweikert

MmPalateMiRNA 1.27.0

Guy Brock

MODA 1.3.0

Dong Li

mogsa 1.11.0

Chen Meng

monocle 2.5.4

Cole Trapnell

MoonlightR 1.3.0

Antonio Colaprico

MoPS 1.11.0

Philipp Eser

mosaics 2.15.0

Dongjun Chung

motifbreakR 1.7.0

Simon Gert Coetzee

motifcounter 1.1.0

Wolfgang Kopp

MotifDb 1.19.0

Paul Shannon

motifmatchr 0.99.8

Alicia Schep

motifRG 1.21.0

Zizhen Yao

motifStack 1.21.1

Jianhong Ou

MotIV 1.33.0

Eloi Mercier , Raphael Gottardo

MPFE 1.13.0

Conrad Burden

mQTL.NMR 1.11.0

Lyamine Hedjazi

msa 1.9.0

Ulrich Bodenhofer

msgbsR 1.1.0

Benjamin Mayne

MSGFgui 1.11.0

Thomas Lin Pedersen

MSGFplus 1.11.1

Thomas Lin Pedersen

msmsEDA 1.15.0

Josep Gregori

msmsTests 1.15.0

Josep Gregori i Font

MSnbase 2.3.9

Laurent Gatto

MSnID 1.11.0

Vlad Petyuk

msPurity 1.3.2

Thomas N. Lawson

MSstats 3.9.0

Meena Choi

Mulcom 1.27.0

Claudio Isella

MultiAssayExperiment 1.3.20

Marcel Ramos

multiClust 1.7.0

Nathan Lawlor

MultiDataSet 1.5.4

Carlos Ruiz-Arenas

MultiMed 1.11.0

Simina M. Boca

multiOmicsViz 1.1.0

Jing Wang

multiscan 1.37.0

Mizanur Khondoker

multtest 2.33.0

Katherine S. Pollard

muscle 3.19.0

Alex T. Kalinka

MutationalPatterns 1.3.0

Francis Blokzijl

MVCClass 1.51.0

Elizabeth Whalen

mvGST 1.11.0

John R. Stevens

MWASTools 1.1.11

Andrea Rodriguez-Martinez , Rafael Ayala

mygene 1.13.0

Adam Mark, Cyrus Afrasiabi, Chunlei Wu

myvariant 1.7.0

Adam Mark, Chunlei Wu

mzID 1.15.0

Thomas Lin Pedersen

mzR 2.11.7

Bernd Fischer

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NADfinder 1.1.2

Jianhong Ou

NanoStringDiff 1.7.0

hong wang

NanoStringQCPro 1.9.0

Robert Ziman

NarrowPeaks 1.21.0

Pedro Madrigal

ncdfFlow 2.23.2

Mike Jiang

NCIgraph 1.25.0

Laurent Jacob

ndexr 0.99.14

Florian Auer

nem 2.51.0

Holger Froehlich

netbenchmark 1.9.0

Pau Bellot

netbiov 1.11.0

Shailesh tripathi

nethet 1.9.0

Nicolas Staedler

NetPathMiner 1.13.1

Ahmed Mohamed

netprioR 1.3.0

Fabian Schmich

netReg 1.1.0

Simon Dirmeier

netresponse 1.37.0

Leo Lahti

NetSAM 1.17.0

Bing Zhang

networkBMA 2.17.0

Ka Yee Yeung

NGScopy 1.11.0

Xiaobei Zhao

nnNorm 2.41.0

Adi Laurentiu Tarca

NOISeq 2.21.0

Sonia Tarazona

nondetects 2.7.0

Valeriia Sherina

normalize450K 1.5.0

Jonathan Alexander Heiss

NormqPCR 1.23.0

James Perkins

normr 1.3.1

Johannes Helmuth

npGSEA 1.13.0

Jessica Larson

NTW 1.27.0

Yuanhua Liu

nucleoSim 1.5.0

Astrid Deschenes

nucleR 2.9.0

Ricard Illa

nudge 1.43.0

N. Dean

NuPoP 1.27.0

Ji-Ping Wang

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occugene 1.37.0

Oliver Will

OCplus 1.51.0

Alexander Ploner

odseq 1.5.0

José Jiménez

OGSA 1.7.0

Michael F. Ochs

oligo 1.41.1

Benilton Carvalho

oligoClasses 1.39.1

Benilton Carvalho and Robert Scharpf

OLIN 1.55.0

Matthias Futschik

OLINgui 1.51.0

Matthias Futschik

omicade4 1.17.1

Chen Meng

OmicCircos 1.15.0

Ying Hu

OmicsMarkeR 1.9.0

Charles E. Determan Jr.

Onassis 0.99.9

Eugenia Galeota

OncoScore 1.5.0

Daniele Ramazzotti

OncoSimulR 2.7.0

Ramon Diaz-Uriarte

~~oneChannelGUI~~ 1.43.1

Raffaele A Calogero

oneSENSE 0.99.5

Yong Kee Tan

ontoCAT 1.29.0

Natalja Kurbatova

openCyto 1.15.0

Mike Jiang

OperaMate 1.9.0

Chenglin Liu

oposSOM 1.15.1

Henry Loeffler-Wirth

oppar 1.5.0

Soroor Hediyeh zadeh

OPWeight 0.99.19

Mohamad Hasan

OrderedList 1.49.0

Claudio Lottaz

Organism.dplyr 1.3.2

Martin Morgan

OrganismDbi 1.19.0

Biocore Data Team

OSAT 1.25.0

Li Yan

Oscope 1.7.0

Ning Leng

OTUbase 1.27.0

Daniel Beck

OutlierD 1.41.0

Sukwoo Kim

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PAA 1.11.0

Michael Turewicz , Martin Eisenacher

PADOG 1.19.0

Adi Laurentiu Tarca

paircompviz 1.15.0

Michal Burda

pandaR 1.9.0

Joseph N. Paulson , Dan Schlauch

PAnnBuilder 1.41.0

Li Hong

panp 1.47.0

Peter Warren

PANR 1.23.0

Xin Wang

PanVizGenerator 1.5.0

Thomas Lin Pedersen

PAPi 1.17.0

Raphael Aggio

parglms 1.9.0

VJ Carey

parody 1.35.0

VJ Carey

Path2PPI 1.7.0

Oliver Philipp

pathifier 1.15.0

Assif Yitzhaky

PathNet 1.17.0

Jason B. Smith

PathoStat 1.3.0

Solaiappan Manimaran

pathprint 1.5.2

Sokratis Kariotis

skipped

pathRender 1.45.0

Vince Carey

pathVar 1.7.0

Samuel Zimmerman

pathview 1.17.5

Weijun Luo

paxtoolsr 1.11.0

Augustin Luna

Pbase 0.17.0

Sebastian Gibb

pbcmc 1.5.0

Cristobal Fresno

pcaExplorer 2.3.0

Federico Marini

pcaGoPromoter 1.21.0

Morten Hansen

pcaMethods 1.69.0

Henning Redestig

PCAN 1.5.0

Matthew Page and Patrice Godard

pcot2 1.45.0

Sarah Song

PCpheno 1.39.0

Nolwenn Le Meur

pdInfoBuilder 1.41.0

Benilton Carvalho

PECA 1.13.0

Tomi Suomi

pepStat 1.11.0

Gregory C Imholte

pepXMLTab 1.11.0

Xiaojing Wang

PGA 1.7.3

Bo Wen , Shaohang Xu

pgca 1.1.0

Gabriela Cohen-Freue

PGSEA 1.51.0

Karl Dykema

skipped

PharmacoGx 1.7.0

Benjamin Haibe-Kains

phenoDist 1.25.0

Xian Zhang

phenopath 0.99.4

Kieran Campbell

phenoTest 1.25.0

Evarist Planet

PhenStat 2.11.0

Jeremy Mason

philr 1.3.0

Justin Silverman

phosphonormalizer 1.1.7

Sohrab Saraei

phyloseq 1.21.0

Paul J. McMurdie

Pi 1.5.0

Hai Fang

piano 1.17.2

Leif Varemo

pickgene 1.49.0

Brian S. Yandell

PICS 2.21.0

Renan Sauteraud

Pigengene 1.3.4

Habil Zare

PING 2.21.0

Renan Sauteraud

pint 1.27.0

Olli-Pekka Huovilainen

pkgDepTools 1.43.0

Seth Falcon

plateCore 1.35.0

Errol Strain

plethy 1.15.0

Daniel Bottomly

plgem 1.49.0

Norman Pavelka

plier 1.47.0

Crispin Miller

PLPE 1.37.0

Soo-heang Eo

plrs 1.17.0

Gwenael G.R. Leday to

plw 1.37.0

Magnus Astrand

pmm 1.9.0

Anna Drewek

podkat 1.9.0

Ulrich Bodenhofer

polyester 1.13.0

Jack Fu , Jeff Leek

Polyfit 1.11.0

Conrad Burden

POST 1.1.0

Xueyuan Cao

PPInfer 1.1.2

Dongmin Jung

ppiStats 1.43.0

Bioconductor Package Maintainer

pqsfinder 1.5.13

Jiri Hon

prada 1.53.0

Florian Hahne

prebs 1.17.0

Karolis Uziela

PREDA 1.23.0

Francesco Ferrari

predictionet 1.23.0

Benjamin Haibe-Kains

preprocessCore 1.39.0

Benjamin Milo Bolstad

Prize 1.7.0

Daryanaz Dargahi

proBAMr 1.11.0

Xiaojing Wang

PROcess 1.53.0

Xiaochun Li

procoil 2.5.0

Ulrich Bodenhofer

ProCoNA 1.15.0

David L Gibbs

proFIA 1.3.2

Alexis Delabriere

profileScoreDist 1.5.0

Paal O. Westermark

pRoloc 1.17.3

Laurent Gatto

pRolocGUI 1.11.1

Laurent Gatto

PROMISE 1.29.0

Stan Pounds , Xueyuan Cao

PROPER 1.9.0

Hao Wu

Prostar 1.9.3

Samuel Wieczorek

prot2D 1.15.0

Sebastien Artigaud

proteinProfiles 1.17.0

Julian Gehring

ProteomicsAnnotationHubData 1.7.0

Laurent Gatto

proteoQC 1.13.5

Bo Wen

ProtGenerics 1.9.0

Laurent Gatto

PSEA 1.11.1

Alexandre Kuhn

psichomics 1.3.1

Nuno Saraiva-Agostinho

PSICQUIC 1.15.0

Paul Shannon

psygenet2r 1.9.3

Alba Gutierrez-Sacristan

puma 3.19.0

Xuejun Liu

PureCN 1.7.44

Markus Riester

pvac 1.25.0

Jun Lu , Pierre R. Bushel

pvca 1.17.0

Jianying LI

Pviz 1.11.0

Renan Sauteraud

PWMEnrich 4.13.0

Robert Stojnic

pwOmics 1.9.1

Maren Sitte

skipped

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qcmetrics 1.15.0

Laurent Gatto

QDNAseq 1.13.0

Daoud Sie

qpcrNorm 1.35.0

Jessica Mar

qpgraph 2.11.0

Robert Castelo

qrqc 1.31.0

Vince Buffalo

qsea 1.3.0

Matthias Lienhard

QUALIFIER 1.21.0

Mike Jiang

quantro 1.11.0

Stephanie Hicks

quantsmooth 1.43.0

Jan Oosting

QuartPAC 1.9.1

Gregory Ryslik

QuasR 1.17.0

Michael Stadler

QuaternaryProd 1.5.0

Carl Tony Fakhry

QUBIC 1.5.0

Yu Zhang

qusage 2.11.0

Christopher Bolen

qvalue 2.9.0

John D. Storey , Andrew J. Bass

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R3CPET 1.9.0

Mohamed Nadhir Djekidel

r3Cseq 1.23.0

Supat Thongjuea

R453Plus1Toolbox 1.27.0

Hans-Ulrich Klein

R4RNA 1.5.0

Daniel Lai

RaggedExperiment 1.1.4

Martin Morgan

rain 1.11.0

Paul F. Thaben

rama 1.51.0

Raphael Gottardo

RamiGO 1.23.0

Markus Schroeder

ramwas 1.1.0

Andrey A Shabalin

randPack 1.23.0

Robert Gentleman

RankProd 3.3.4

Francesco Del Carratore

RareVariantVis 2.4.0

Tomasz Stokowy

Rariant 1.13.0

Julian Gehring

RbcBook1 1.45.0

Vince Carey

RBGL 1.53.0

Bioconductor Package Maintainer

RBioinf 1.37.0

Robert Gentleman

rBiopaxParser 2.17.0

Frank Kramer

RBM 1.9.0

Dongmei Li

Rbowtie 1.17.0

Michael Stadler

rbsurv 2.35.0

Soo-heang Eo

Rcade 1.19.0

Jonathan Cairns

RCAS 1.3.3

Bora Uyar

RCASPAR 1.23.0

Douaa Mugahid , Lars Kaderali

rcellminer 1.9.1

Augustin Luna , Vinodh Rajapakse

rCGH 1.7.0

Frederic Commo

Rchemcpp 2.15.0

Guenter Klambauer

RchyOptimyx 2.17.0

Adrin Jalali , Nima Aghaeepour

Rcpi 1.13.4

Nan Xiao

RCy3 1.7.0

Tanja Muetze , Georgi Kolishovski , Paul Shannon

RCyjs 1.9.4

Paul Shannon

~~RCytoscape~~ 1.27.1

Paul Shannon

RDAVIDWebService 1.15.0

Cristobal Fresno

rDGIdb 1.2.1

Thomas Thurnherr

Rdisop 1.37.0

Steffen Neumann

RDRToolbox 1.27.0

Christoph Bartenhagen

ReactomePA 1.21.2

Guangchuang Yu

readat 1.3.0

Richard Cotton

ReadqPCR 1.23.0

James Perkins

reb 1.55.0

Karl J. Dykema

recount 1.3.4

Leonardo Collado-Torres

recoup 1.5.0

Panagiotis Moulos

RedeR 1.25.1

Mauro Castro

REDseq 1.23.0

Lihua Julie Zhu

RefNet 1.13.0

Paul Shannon

RefPlus 1.47.0

Kai-Ming Chang

regioneR 1.9.1

Bernat Gel

regionReport 1.11.3

Leonardo Collado-Torres

regsplice 1.3.0

Lukas M. Weber

REMP 1.1.1

Yinan Zheng

Repitools 1.23.0

Mark Robinson

ReportingTools 2.17.2

Jason A. Hackney , Gabriel Becker

ReQON 1.23.0

Christopher Cabanski

rexposome 0.99.90

Carles Hernandez-Ferrer

rfPred 1.15.0

Hugo Varet

rGADEM 2.25.0

Arnaud Droit

RGalaxy 1.21.1

Bioconductor Package Maintainer

RGraph2js 1.5.0

Stephane Cano

Rgraphviz 2.21.0

Kasper Daniel Hansen

rGREAT 1.9.0

Zuguang Gu

RGSEA 1.11.0

Chengcheng Ma

rgsepd 1.9.0

Karl Stamm

rhdf5 2.21.3

Mike Smith

Rhdf5lib 0.99.13

Mike Smith

Rhtslib 1.9.2

Bioconductor Package Maintainer

rHVDM 1.43.0

Martino Barenco

RiboProfiling 1.7.1

A. Popa

riboSeqR 1.11.0

Thomas J. Hardcastle

RImmPort 1.5.0

Ravi Shankar

Ringo 1.41.0

J. Toedling

RIPSeeker 1.17.0

Yue Li

Risa 1.19.0

Alejandra Gonzalez-Beltran

RITAN 1.1.0

Michael Zimmermann

RIVER 1.1.0

Yungil Kim

RJMCMCNucleosomes 1.1.0

Astrid Deschênes

RLMM 1.39.0

Nusrat Rabbee

Rmagpie 1.33.0

Camille Maumet

RMassBank 2.5.0

RMassBank at Eawag

rMAT 3.27.0

Arnaud Droit and Raphael Gottardo

RmiR 1.33.0

Francesco Favero

RNAinteract 1.25.0

Bernd Fischer

RNAither 2.25.0

Lars Kaderali

RNAprobR 1.9.0

Nikos Sidiropoulos

rnaseqcomp 1.7.0

Mingxiang Teng

rnaSeqMap 2.35.0

Michal Okoniewski

RNASeqPower 1.17.0

Terry M Therneau

RnaSeqSampleSize 1.9.1

Shilin Zhao

RnBeads 1.9.0

Fabian Mueller

Rnits 1.11.0

Dipen P. Sangurdekar

roar 1.13.1

Elena Grassi

ROC 1.53.0

Vince Carey

Roleswitch 1.15.0

Yue Li

rols 2.5.1

Laurent Gatto

skipped

ROntoTools 2.5.0

Calin Voichita

ropls 1.9.0

Etienne A. Thevenot

ROTS 1.5.1

Fatemeh Seyednasrollah

RPA 1.33.0

Leo Lahti

RProtoBufLib 0.99.5

Mike Jiang

RpsiXML 2.19.0

Jitao David Zhang

rpx 1.13.2

Laurent Gatto

Rqc 1.11.0

Welliton Souza

rqt 1.2.2

Ilya Y. Zhbannikov

rqubic 1.23.0

Jitao David Zhang

rRDP 1.11.0

Michael Hahsler

RRHO 1.17.0

Jonathan Rosenblatt

Rsamtools 1.29.0

Bioconductor Package Maintainer

rsbml 2.35.0

Michael Lawrence

rSFFreader 0.25.0

Matt Settles

Rsubread 1.27.4

Wei Shi , Yang Liao and Gordon K Smyth

RSVSim 1.17.0

Christoph Bartenhagen

rTANDEM 1.17.0

Frederic Fournier

RTCA 1.29.0

Jitao David Zhang

RTCGA 1.7.0

Marcin Kosinski

RTCGAToolbox 2.7.0

Mehmet Kemal Samur

RTN 1.15.2

Mauro Castro

RTNduals 1.1.3

Vinicius Chagas , Mauro Castro , Clarice Groeneveld

RTNsurvival 0.99.13

Clarice Groeneveld

RTopper 1.23.0

Luigi Marchionni

rtracklayer 1.37.3

Michael Lawrence

Rtreemix 1.39.0

Jasmina Bogojeska

rTRM 1.15.0

Diego Diez

rTRMui 1.15.0

Diego Diez

RUVcorr 1.9.0

Saskia Freytag

RUVnormalize 1.11.0

Laurent Jacob

RUVSeq 1.11.0

Davide Risso

RVS 0.99.3

Thomas Sherman

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S4Vectors 0.15.5

Bioconductor Package Maintainer

safe 3.17.0

William T. Barry

sagenhaft 1.47.0

Tim Beissbarth

SAGx 1.51.0

Per Broberg,

samExploreR 1.1.0

shailesh tripathi

sampleClassifier 1.1.0

Khadija El-Amrani

SamSPECTRAL 1.31.0

Habil Zare

sangerseqR 1.13.0

Jonathon Hill

SANTA 2.15.0

Alex J. Cornish

sapFinder 1.15.0

Shaohang Xu , Bo Wen

savR 1.15.0

R. Brent Calder

SBMLR 1.73.0

Tomas Radivoyevitch

SC3 1.5.1

Vladimir Kiselev

Scale4C 0.99.5

Carolin Walter

SCAN.UPC 2.19.1

Stephen R. Piccolo

scater 1.5.0

Davis McCarthy

scDD 1.1.0

Keegan Korthauer

scde 2.5.0

Jean Fan

ScISI 1.49.0

Tony Chiang

scmap 0.99.2

Vladimir Kiselev

SCnorm 0.99.7

Rhonda Bacher

scone 1.1.2

Michael Cole

scoreInvHap 0.99.17

Carlos Ruiz

scran 1.5.8

Aaron Lun

scsR 1.13.0

Andrea Franceschini , Roger Meier , Christian von Mering

segmentSeq 2.11.2

Thomas J. Hardcastle

SELEX 1.9.0

Harmen Bussemaker

SemDist 1.11.0

Ian Gonzalez

semisup 1.1.1

Armin Rauschenberger

SEPA 1.7.0

Zhicheng Ji

seq2pathway 1.9.0

Xinan Yang with contribution from Lorenzo Pesce and Ana Marija Sokovic

SeqArray 1.17.3

Xiuwen Zheng

seqbias 1.25.0

Daniel Jones

seqCNA 1.23.0

David Mosen-Ansorena

SeqGSEA 1.17.0

Xi Wang

seqLogo 1.43.0

Oliver Bembom

seqPattern 1.9.0

Vanja Haberle

seqplots 1.15.0

Przemyslaw Stempor

seqTools 1.11.0

Wolfgang Kaisers

SeqVarTools 1.15.1

Stephanie M. Gogarten

sevenbridges 1.7.0

Nan Xiao

SGSeq 1.11.2

Leonard Goldstein

shinyMethyl 1.13.0

Jean-Philippe Fortin

shinyTANDEM 1.15.0

Frederic Fournier

ShortRead 1.35.1

Bioconductor Package Maintainer

SICtools 1.7.0

Xiaobin Xing

sigaR 1.25.0

Wessel N. van Wieringen

SigCheck 2.9.0

Rory Stark

SigFuge 1.15.0

Patrick Kimes

siggenes 1.51.0

Holger Schwender

sights 1.3.0

Elika Garg

signeR 1.3.1

Renan Valieris

sigPathway 1.45.0

Weil Lai

sigsquared 1.9.0

UnJin Lee

SIM 1.47.0

Renee X. de Menezes

SIMAT 1.9.0

Mo R. Nezami Ranjbar

SimBindProfiles 1.15.0

Bettina Fischer

similaRpeak 1.9.0

Astrid Deschenes

SIMLR 1.3.0

Daniele Ramazzotti

simpleaffy 2.53.0

Crispin Miller

simulatorZ 1.11.0

Yuqing Zhang

sincell 1.9.0

Miguel Julia , Antonio Rausell

SingleCellExperiment 0.99.1

Davide Risso

SISPA 1.7.0

Bhakti Dwivedi

sizepower 1.47.0

Weiliang Qiu

skewr 1.9.0

Ryan Putney

SLGI 1.37.0

Nolwenn Le Meur

SLqPCR 1.43.0

Matthias Kohl

SMAP 1.41.0

Robin Andersson

SMITE 1.5.1

Neil Ari Wijetunga

SNAGEE 1.17.0

David Venet

snapCGH 1.47.0

John Marioni

snm 1.25.0

John D. Storey

SNPchip 2.23.0

Robert Scharpf

SNPediaR 1.3.0

David Montaner

SNPhood 1.7.1

Christian Arnold

SNPRelate 1.11.1

Xiuwen Zheng

snpStats 1.27.0

David Clayton

soGGi 1.9.1

Tom Carroll

SomaticSignatures 2.13.1

Julian Gehring

SpacePAC 1.15.0

Gregory Ryslik

sparseDOSSA 1.1.0

Boyu Ren, Emma Schwager

specL 1.11.2

Christian Panse , Witold E. Wolski

SpeCond 1.31.0

Florence Cavalli

SPEM 1.17.0

Xinyi YANG

SPIA 2.29.0

Adi Laurentiu Tarca

SpidermiR 1.7.3

Claudia Cava

spikeLI 2.37.0

Enrico Carlon

spkTools 1.33.0

Matthew N McCall

splatter 1.1.4

Luke Zappia

splicegear 1.49.0

Laurent Gautier

spliceR 1.19.0

Johannes Waage

spliceSites 1.25.0

Wolfgang Kaisers

SplicingGraphs 1.17.1

H. Pagès

splineTimeR 1.5.0

Herbert Braselmann

SPLINTER 1.3.0

Diana Low

splots 1.43.1

Wolfgang Huber

spotSegmentation 1.51.0

Chris Fraley

SQUADD 1.27.0

Martial Sankar

SRAdb 1.35.0

Jack Zhu

sRAP 1.17.0

Charles Warden

SRGnet 1.3.0

Isar Nassiri

sscore 1.49.0

Richard Kennedy

sscu 2.7.0

Yu Sun

sSeq 1.15.0

Danni Yu

ssize 1.51.0

Gregory R. Warnes

SSPA 2.17.0

Maarten van Iterson

ssviz 1.11.1

Diana Low

STAN 2.5.1

Rafael Campos-Martin

skipped

staRank 1.19.0

Juliane Siebourg

StarBioTrek 1.3.1

Claudia Cava

Starr 1.33.0

Benedikt Zacher

STATegRa 1.11.0

David Gomez-Cabrero

statTarget 1.7.1

Hemi Luan

stepNorm 1.49.0

Yuanyuan Xiao

~~stepwiseCM~~ 1.23.1

Askar Obulkasim

Streamer 1.23.0

Martin Morgan

STRINGdb 1.17.1

Damian Szklarczyk

STROMA4 1.1.0

Sadiq Saleh

subSeq 1.7.0

Andrew J. Bass , John D. Storey

SummarizedExperiment 1.7.5

Bioconductor Package Maintainer

supraHex 1.15.0

Hai Fang

survcomp 1.27.0

Benjamin Haibe-Kains , Markus Schroeder , Catharina Olsen

Sushi 1.15.0

Douglas H Phanstiel

sva 3.25.4

Jeffrey T. Leek , John D. Storey

SVAPLSseq 1.3.1

Sutirtha Chakraborty

SVM2CRM 1.9.0

Guidantonio Malagoli Tagliazucchi

SWATH2stats 1.7.2

Peter Blattmann

SwathXtend 1.99.4

Jemma Wu

swfdr 1.1.0

Simina M. Boca , Jeffrey T. Leek

SwimR 1.15.0

Randy Blakely

switchBox 1.13.0

Bahman Afsari , Luigi Marchionni

switchde 1.3.0

Kieran Campbell

synapter 2.1.0

Laurent Gatto

synergyfinder 1.3.0

Liye He

skipped

synlet 1.7.0

Chunxuan Shao

systemPipeR 1.11.0

Thomas Girke

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TargetScore 1.15.0

Yue Li

TargetSearch 1.33.0

Alvaro Cuadros-Inostroza

TarSeqQC 1.7.1

Gabriela Merino

TCC 1.17.0

Jianqiang Sun

TCGAbiolinks 2.5.7

Antonio Colaprico

TCGAbiolinksGUI 1.3.2

Tiago C. Silva

TCseq 1.1.0

Mengjun Wu

TDARACNE 1.27.0

Zoppoli Pietro

TEQC 3.17.0

Manuela Hummel

ternarynet 1.21.0

Matthew N. McCall

TFBSTools 1.15.4

Ge Tan

tigre 1.31.0

Antti Honkela

tilingArray 1.55.0

Zhenyu Xu

timecourse 1.49.0

Yu Chuan Tai

timescape 1.1.0

Maia Smith

TIN 1.9.0

Bjarne Johannessen

TitanCNA 1.15.0

Gavin Ha , Sohrab P Shah

tkWidgets 1.55.0

J. Zhang

tofsims 1.5.0

Lorenz Gerber

ToPASeq 1.11.0

Ivana Ihnatova

topGO 2.29.0

Adrian Alexa

TPP 3.5.14

Dorothee Childs

tracktables 1.11.0

Tom Carroll

trackViewer 1.13.8

Jianhong Ou

transcriptR 1.5.0

Armen R. Karapetyan

tRanslatome 1.15.0

Toma Tebaldi , Erik Dassi

TransView 1.21.0

Julius Muller

traseR 1.7.0

li chen

treeio 1.1.0

Guangchuang Yu

trena 0.99.10

Matthew Richards

skipped

triform 1.19.0

Thomas Carroll

trigger 1.23.0

John D. Storey

trio 3.15.0

Holger Schwender

triplex 1.17.0

Jiri Hon

TRONCO 2.9.0

BIMIB Group

TSCAN 1.15.0

Zhicheng Ji

tspair 1.35.0

Jeffrey T. Leek

TSRchitect 1.1.0

R. Taylor Raborn

TSSi 1.23.0

Julian Gehring

TurboNorm 1.25.0

Maarten van Iterson

TVTB 1.3.1

Kevin Rue-Albrecht

tweeDEseq 1.23.0

Juan R Gonzalez

twilight 1.53.0

Stefanie Scheid

twoddpcr 1.1.3

Anthony Chiu

tximport 1.5.0

Michael Love

TypeInfo 1.43.0

Duncan Temple Lang

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UNDO 1.19.0

Niya Wang

unifiedWMWqPCR 1.13.0

Joris Meys

UniProt.ws 2.17.0

Marc Carlson

Uniquorn 1.4.2

'Raik Otto'

uSORT 1.3.0

Hao Chen

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VanillaICE 1.39.2

Robert Scharpf

variancePartition 1.7.0

Gabriel E. Hoffman

VariantAnnotation 1.23.8

Valerie Obenchain

VariantFiltering 1.13.11

Robert Castelo

VariantTools 1.19.1

Michael Lawrence

vbmp 1.45.0

Nicola Lama

Vega 1.25.0

Sandro Morganella

VegaMC 3.15.0

Sandro Morganella

viper 1.11.1

Mariano J Alvarez

vsn 3.45.2

Wolfgang Huber

vtpnet 0.17.0

VJ Carey

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wateRmelon 1.21.2

Leo

wavClusteR 2.11.0

Federico Comoglio

waveTiling 1.19.0

Kristof De Beuf

weaver 1.43.0

Seth Falcon

webbioc 1.49.0

Colin A. Smith

widgetTools 1.55.0

Jianhua Zhang

wiggleplotr 1.1.0

Kaur Alasoo

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XBSeq 1.6.1

Yuanhang Liu

xcms 2.99.6

Steffen Neumann

XDE 2.23.0

Robert Scharpf

xmapbridge 1.35.0

Chris Wirth

xps 1.37.1

Christian Stratowa

XVector 0.17.0

Hervé Pagès

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yamss 1.3.0

Leslie Myint

YAPSA 1.3.0

Daniel Huebschmann

yaqcaffy 1.37.0

Laurent Gatto

yarn 1.3.0

Joseph N Paulson

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zFPKM 0.99.18

Ron Ammar

skipped

zinbwave 0.99.6

Davide Risso