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This page was generated on 2017-08-16 13:19:58 -0400 (Wed, 16 Aug 2017).
| Package 81/1410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BAGS 2.17.0 Alejandro Quiroz-Zarate
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ OK ] |  | |||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | | |||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: BAGS |
| Version: 2.17.0 |
| Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BAGS_2.17.0.tar.gz |
| StartedAt: 2017-08-15 21:20:29 -0400 (Tue, 15 Aug 2017) |
| EndedAt: 2017-08-15 21:21:53 -0400 (Tue, 15 Aug 2017) |
| EllapsedTime: 83.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BAGS.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings BAGS_2.17.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/BAGS.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BAGS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BAGS’ version ‘2.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BAGS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Gibbs2 40.164 0.688 40.892
MCMCDataSet 9.532 0.392 9.931
DataGeneSets 7.812 0.556 8.588
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.6-bioc/meat/BAGS.Rcheck/00check.log’
for details.
BAGS.Rcheck/00install.out:
* installing *source* package ‘BAGS’ ...
** libs
gcc -I/home/biocbuild/bbs-3.6-bioc/R/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:0:
FuncionesFast-Final.h: In function ‘BetaFunCSDiff2’:
FuncionesFast-Final.h:145:70: warning: unused variable ‘YMu1’ [-Wunused-variable]
double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
^
FuncionesFast-Final.h: In function ‘AlfaFunCS’:
FuncionesFast-Final.h:166:105: warning: unused variable ‘MediaDiff’ [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
FuncionesFast-Final.h:166:94: warning: unused variable ‘A’ [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
FuncionesFast-Final.h:166:92: warning: unused variable ‘C’ [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
BAGS.c: In function ‘Gibbs5’:
BAGS.c:25:48: warning: unused variable ‘resI’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:43: warning: unused variable ‘rate’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:36: warning: unused variable ‘escala’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:28: warning: unused variable ‘escala3’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:20: warning: unused variable ‘escala2’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:12: warning: unused variable ‘escala1’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:24:12: warning: unused variable ‘formaAux’ [-Wunused-variable]
double formaAux;
^
BAGS.c:18:80: warning: variable ‘ResSgmA’ set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
^
BAGS.c:15:15: warning: variable ‘AaPi’ set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^
BAGS.c: In function ‘Gibbs4’:
BAGS.c:342:48: warning: unused variable ‘resI’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:43: warning: unused variable ‘rate’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:36: warning: unused variable ‘escala’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:28: warning: unused variable ‘escala3’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:20: warning: unused variable ‘escala2’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:12: warning: unused variable ‘escala1’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:341:12: warning: unused variable ‘formaAux’ [-Wunused-variable]
double formaAux;
^
BAGS.c:335:63: warning: variable ‘ResSgmA’ set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
^
BAGS.c:332:15: warning: variable ‘AaPi’ set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^
BAGS.c: In function ‘Gibbs3’:
BAGS.c:593:48: warning: unused variable ‘resI’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:43: warning: unused variable ‘rate’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:36: warning: unused variable ‘escala’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:28: warning: unused variable ‘escala3’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:20: warning: unused variable ‘escala2’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:12: warning: unused variable ‘escala1’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:592:12: warning: unused variable ‘formaAux’ [-Wunused-variable]
double formaAux;
^
BAGS.c:586:46: warning: variable ‘ResSgmA’ set but not used [-Wunused-but-set-variable]
double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
^
BAGS.c:583:15: warning: variable ‘AaPi’ set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^
BAGS.c: In function ‘Gibbs2’:
BAGS.c:786:48: warning: unused variable ‘resI’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:43: warning: unused variable ‘rate’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:36: warning: unused variable ‘escala’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:28: warning: unused variable ‘escala3’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:20: warning: unused variable ‘escala2’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:12: warning: unused variable ‘escala1’ [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:785:12: warning: unused variable ‘formaAux’ [-Wunused-variable]
double formaAux;
^
BAGS.c:779:29: warning: variable ‘ResSgmA’ set but not used [-Wunused-but-set-variable]
double ResRho1,ResSgmA1,ResSgmA;
^
BAGS.c:776:15: warning: variable ‘AaPi’ set but not used [-Wunused-but-set-variable]
double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
^
gcc -shared -L/home/biocbuild/bbs-3.6-bioc/R/lib -L/usr/local/lib -o BAGS.so BAGS.o -L/home/biocbuild/bbs-3.6-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.6-bioc/meat/BAGS.Rcheck/BAGS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BAGS)
BAGS.Rcheck/BAGS-Ex.timings:
| name | user | system | elapsed | |
| AnnotationMFGO | 0.020 | 0.004 | 0.024 | |
| BAGS-package | 0 | 0 | 0 | |
| DataGeneSets | 7.812 | 0.556 | 8.588 | |
| Gibbs2 | 40.164 | 0.688 | 40.892 | |
| Gibbs3 | 0.000 | 0.000 | 0.001 | |
| Gibbs4 | 0.000 | 0.000 | 0.001 | |
| Gibbs5 | 0.000 | 0.000 | 0.001 | |
| MCMCDataSet | 9.532 | 0.392 | 9.931 | |
| ReadGMT | 0.000 | 0.000 | 0.001 | |