ExperimentHubData 1.3.3
Bioconductor Package Maintainer
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ExperimentHubData | | Last Changed Rev: 131910 / Revision: 131943 | | Last Changed Date: 2017-08-14 07:31:58 -0400 (Mon, 14 Aug 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | [ WARNINGS ] | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | WARNINGS | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ExperimentHubData_1.3.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/ExperimentHubData.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ExperimentHubData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHubData’ version ‘1.3.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHubData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Title’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Description’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘BiocVersion’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Genome’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘SourceType’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘SourceUrl’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘SourceVersion’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Species’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘TaxonomyId’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Coordinate_1_based’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘DataProvider’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘Maintainer’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘RDataClass’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘RDataDateAdded’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘RDataPath’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘DispatchClass’
makeExperimentHubMetadata : <anonymous>: no visible binding for global
variable ‘PreparerClass’
Undefined global functions or variables:
BiocVersion Coordinate_1_based DataProvider Description DispatchClass
Genome Maintainer PreparerClass RDataClass RDataDateAdded RDataPath
SourceType SourceUrl SourceVersion Species TaxonomyId Title
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ExperimentHubMetadata-class.Rd':
‘[AnnotationHubData]{makeExperimentHubMetadata}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.6-bioc/meat/ExperimentHubData.Rcheck/00check.log’
for details.
* installing *source* package ‘ExperimentHubData’ ...
** R
** inst
** preparing package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery
* DONE (ExperimentHubData)