BioC 3.6: BUILD report for MAIT on malbec1

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MAIT
###
##############################################################################
##############################################################################


* checking for file ‘MAIT/DESCRIPTION’ ... OK
* preparing ‘MAIT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: CAMERA
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: xcms
Loading required package: BiocParallel
Loading required package: MSnbase
Loading required package: mzR
Loading required package: Rcpp
Loading required package: ProtGenerics

This is MSnbase version 2.3.9 
  Read '?MSnbase' and references therein for information
  about the package and how to get started.


Attaching package: ‘MSnbase’

The following object is masked from ‘package:stats’:

    smooth

The following object is masked from ‘package:base’:

    trimws


This is xcms version 2.99.6 


Attaching package: ‘xcms’

The following object is masked from ‘package:stats’:

    sigma

Loading required package: pls

Attaching package: ‘pls’

The following object is masked from ‘package:stats’:

    loadings


Attaching package: ‘MAIT’

The following objects are masked from ‘package:pls’:

    loadings, scores

The following object is masked from ‘package:mzR’:

    model

The following object is masked from ‘package:BiocGenerics’:

    plotPCA

The following object is masked from ‘package:stats’:

    loadings

Processing 3201 mz slices ... OK
Performing retention time correction using 1 peak groups.
Warning in do_adjustRtime_peakGroups(peaks = peakmat, peakIndex = object@groupidx,  :
  Too few peak groups for 'loess', reverting to linear method

Error: processing vignette 'MAIT_Vignette.Rnw' failed with diagnostics:
 chunk 2 (label = sampleProcessing) 
Error in do_adjustRtime_peakGroups(peaks = peakmat, peakIndex = object@groupidx,  : 
  Not enough peak groups even for linear smoothing available!
Execution halted
BioC 3.6: BUILD report for MAIT on malbec1

Summary

Command output
