BioC 3.6: CHECK report for funtooNorm on malbec1

Package: funtooNorm

Version: 1.1.0

Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings funtooNorm_1.1.0.tar.gz

StartedAt: 2017-08-15 23:15:47 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 23:21:08 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 320.8 seconds

RetCode: 0

Status:  OK

CheckDir: funtooNorm.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings funtooNorm_1.1.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.6-bioc/meat/funtooNorm.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘funtooNorm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘funtooNorm’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘funtooNorm’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotValidationGraph 21.512  0.120  21.643
funtooNorm          18.276  1.120  19.409
getNormBeta         17.716  0.940  18.665
getNormM            17.164  0.748  17.923
getSnpM             16.096  0.632  16.737
fromRGChannelSet    11.904  3.788  17.187
getRawBeta           6.192  0.444   6.637
getGRanges           4.628  0.556   5.187
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘funtooNorm’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (funtooNorm)

name	user	system	elapsed
SampleSet-class	0.004	0.000	0.002
agreement	0.000	0.000	0.002
fromRGChannelSet	11.904	3.788	17.187
funtooNorm	18.276	1.120	19.409
getGRanges	4.628	0.556	5.187
getNormBeta	17.716	0.940	18.665
getNormM	17.164	0.748	17.923
getRawBeta	6.192	0.444	6.637
getSnpM	16.096	0.632	16.737
plotValidationGraph	21.512	0.120	21.643
show-SampleSet-method	4.256	0.004	4.260