Mustafa Erhan Ozer
| Snapshot Date: 2025-01-20 13:00 -0500 (Mon, 20 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-23 12:13 -0500 (Thu, 23 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4493 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-21 11:33:11 -0000 (Tue, 21 Jan 2025) |
| EndedAt: 2025-01-21 11:39:41 -0000 (Tue, 21 Jan 2025) |
| EllapsedTime: 389.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 388,593,25821,10466,1583,5551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,28976,1281,2990,5644,196385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,10,406922,5599,7289,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,57570,1185,8854,5654,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,1812,18,3638,53345,6714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,590,27344,2984,5538,5702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54798,8600,7052,2559,4299,3596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6948,84705,55699,9241,54205,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,56919,344905,3122,57107,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,57215,10875,10165,1056,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131669,8879,91942,7037,3482,1734
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407004,6403,2006,3948,4988,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,54675,7026,1435,7157,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,1589,1584,1442,6788,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79585,55967,4790,345,5315,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26175,10730,4012,10269,64116,3357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,23389,81033,10229,5588,3570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1813,3795,10730,796,1200,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2950,388753,335,476,1909,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,5052,5190,3065,5189,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,7325,10383,2791,1175,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10537,5139,7381,22820,1675,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,51206,3958,857,1650,7428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3636,2767,3728,4700,2548,10874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,1508,25821,116228,84947,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,2952,3030,156,2760,85446
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,29881,140803,2180,1586,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,4314,26762,2280,7384,55005
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,9868,6554,3098,3295,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27344,8642,1443,200186,7172,7157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,79572,94235,9692,2984,200205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3667,6898,4035,10560,376497,6616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,1071,29881,1769,2590,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,7385,9131,5702,2247,275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54549,133522,203,4700,7292,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,9526,183,5728,10911,644974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,487,9779,8877,6821,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,5256,9630,1027,8659,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6584,255231,1678,148738,79585,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 213,10269,5286,123099,151,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4069,5350,4314,1645,537,5901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84061,5506,1889,1789,558,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,55331,27249,2950,1812,54575
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56999,10221,2309,7376,56259,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55024,2591,6891,3119,406937,2762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7421,3934,4089,1594,54205,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,4722,1312,64240,4035,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3990,10965,2673,6513,388962,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2247,7036,7252,3479,7389,3489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3030,27089,283120,5096,64241,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4715,6522,285126,427,27249,3586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,3703,26291,4153,5789,10724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,2984,1641,151,5447,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7428,8678,51478,57104,9388,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1027,513,344,53345,3980,2746
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,5313,3485,2194,1022,6448
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1393,4288,5192,5830,3054,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,10382,79602,3351,6906,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4160,8462,1843,795,3558,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,4942,694,57678,1586,940
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4069,5925,22933,1524,7048,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,4744,32,1890,492,54552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,10019,656,3875,7054,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,124976,2308,655,2847,24147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,2798,3692,4702,80222,1282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,4713,1968,857,886,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,8932,4137,6248,147007,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,5728,161247,4846,7220,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,7172,23474,7916,55753,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,6341,10379,80347,4040,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,728294,3073,26762,5236,7942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,4709,25974,1508,7389,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,427,1029,57817,79133,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 844,3553,91647,4547,54806,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,4744,200539,3054,643181,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79144,5261,1490,63899,54806,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,51478,5188,85569,1636,3954
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83693,7025,10295,125988,3490,549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10935,790,3113,10165,81033,3115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,57176,4015,3087,6198,9698
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,84062,4694,356,150379,2517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,11019,111,56606,5501,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1586,4035,4233,6576,407009,181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 142,4846,1376,25915,2632,6888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,29880,594,23038,2314,3596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,3062,867,79644,43,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,5270,2548,1499,2932,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,57818,26119,796,6788,55486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1514,4718,4915,5241,8665,387787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3598,5465,4713,27232,213,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,7097,2243,25828,6492,3663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6748,283120,5467,2587,9672,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4878,6347,10269,3980,54344,3440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,84947,2099,1028,6521,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,8660,55532,60528,53345,3709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,821,55532,999,4285,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,7347,5744,4125,5078,3172
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4247,1582,130589,152078,111,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4337,93587,7038,7941,664,3551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90865,160287,2876,85569,199,9526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,51206,4714,5781,6582,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,355,7494,84649,374291,383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56606,2790,3551,10580,824,6696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,7355,339,5799,1581,177
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5176,208,1489,3174,196385,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,2271,130120,581,2786,7498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,55486,1571,9409,513,7384
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80347,4312,3486,153642,2194,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4313,8471,116228,3293,5562,64601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,169026,1471,132001,1351,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,1738,5192,4694,3930,3033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,4705,7391,213,1347,183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440503,2745,57511,1645,91574,2864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,79949,249,133522,1327,6340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,79572,3598,1956,644974,5370
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
76.316 1.760 88.363
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.751 | 0.031 | 1.980 | |