Mustafa Erhan Ozer
| Snapshot Date: 2025-03-03 13:00 -0500 (Mon, 03 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-06 12:12 -0500 (Thu, 06 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4769 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4504 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4527 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4480 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4416 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-04 11:21:17 -0000 (Tue, 04 Mar 2025) |
| EndedAt: 2025-03-04 11:33:40 -0000 (Tue, 04 Mar 2025) |
| EllapsedTime: 742.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 3600,7494,79934,3054,63874,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7422,10135,56997,6720,83548,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,5660,3242,133,9969,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79633,81033,2305,55750,1056,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,7026,217,5588,10642,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,941,112817,5330,6519,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8694,7325,2147,7287,6569,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,9479,154,3991,51004,5798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5498,7494,8431,6462,121268,3783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1649,4688,11132,4159,5584,4744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10243,2864,3117,83548,85569,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,1371,133396,1649,10682,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,3251,4684,632,644974,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,213,4886,7376,22796,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 339,4502,92935,3598,51555,5967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10753,9382,81704,1444,9409,2642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4851,92667,65985,23410,1374,6770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,64131,629,221935,5019,19
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,5442,23395,51604,23054,5191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,56052,178,3791,2628,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2146,7498,1374,5836,940,285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,4779,4728,3119,857,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,3948,292,563,498,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6648,10466,4714,3586,4968,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6678,477,594,432369,3242,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3703,54205,3643,7275,492,3479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5571,10616,10159,9429,4887,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,130120,23054,406934,1586,5584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,8651,84275,5184,3123,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,10094,57107,2720,8942,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,160428,5091,6513,5270,27429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,8743,7287,8560,1813,1737
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,11136,2053,650,5919,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,4705,4306,339,1497,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79796,1351,2184,57001,55005,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54805,26235,1201,7157,793,4758
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2791,2194,4695,4878,55863,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27329,801,22901,6319,1859,5901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,51241,7352,2762,26517,1182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,361,5054,3358,80339,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2146,7494,6890,5713,1393,407010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,7295,4719,9607,2632,137994
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9365,129787,3375,54148,255231,1347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,2693,4988,1327,91574,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,9919,155,652,5579,10020
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1234,24147,6678,2878,2908,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,6718,1543,3416,55863,434
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,2984,2591,643181,1509,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,3978,54552,27247,1559,4780
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,2673,55970,26521,33,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3485,10000,2740,56259,5162,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,3630,5660,5967,105372280,7048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,3507,1629,389,4247,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389692,7498,48,57048,7515,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,6554,64900,116150,434,941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,4709,9868,6182,55644,23600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,2677,6492,3558,387082,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,1270,56729,85479,825,1436
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,169792,213,1893,22901,7287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 516,2266,3988,7840,3066,149461
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92667,1581,6948,4864,29880,54809
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,203068,10686,57570,1182,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,7916,100131801,1588,958,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 87178,201595,229,266,11222,4854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,1499,7386,23410,55967,5442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,3783,55163,9380,2875,7100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,27429,9451,3692,1270,5506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,2243,570,79602,479,9559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,2309,100529063,3284,344905,52
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4319,537,2767,64788,1544,10753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3795,79661,4704,5291,4760,11222
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5770,91452,10682,1802,10269,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55278,5588,3480,2937,90624,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,2030,551,10019,54798,29880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7295,51649,4040,1859,23474,389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,3938,2793,2109,6833,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9997,406906,364,123263,9409,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 367,9056,2944,406937,2280,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,2628,5105,4128,84342,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,6439,4942,54205,90865,776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57570,53905,6517,2702,1585,51441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6696,64601,85365,3115,56848,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6906,10580,492,7421,4712,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 632,665,10221,9607,90865,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5372,6999,1329,5563,4286,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2798,51021,6582,4609,7054,7036
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,6505,5211,5331,4502,79644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,9559,50484,4718,8471,6554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,4159,5329,22852,5592,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10577,513,1514,4704,2542,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,3710,64432,1757,6720,6356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,6351,6382,517,6182,3627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 627,2314,551,4694,6382,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,7097,7248,3073,51,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 335,551,23516,7388,6199,2584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7098,7048,63931,367,11231,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1230,2936,48,407009,2184,4040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,1244,2847,2903,2099,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54798,7078,7325,2653,1607,9374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4357,1806,9095,5967,1906,653509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9945,54704,79133,1230,1373,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 145264,4719,26354,627,84062,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,1798,50506,4700,55788,6788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,10891,1442,6263,94235,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,3339,7325,1409,2693,2118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,2200,6548,4137,3486,8660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,54805,1559,4864,9409,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5730,133,6517,1910,133396,643181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,513,10730,5161,7384,2788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1585,51103,7350,100130015,10013,29078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 155,8862,124976,57511,8648,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,23474,56623,56848,4089,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,10165,9241,387787,10599,128486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9021,308,7035,4879,3958,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6794,239,133522,18,26762,2052
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
354.860 2.335 421.292
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.883 | 0.055 | 1.873 | |