Mustafa Erhan Ozer
| Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-09 12:07 -0500 (Thu, 09 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-03 06:42:05 -0500 (Fri, 03 Jan 2025) |
| EndedAt: 2025-01-03 06:47:57 -0500 (Fri, 03 Jan 2025) |
| EllapsedTime: 352.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 7100,1869,56052,2677,7077,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,4854,537,4015,11136,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8772,5264,27089,665,1346,4299
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84062,1409,7325,197,54576,2694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7289,5264,509,3991,3684,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,26119,7084,57001,133522,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,1185,351,585,132001,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,79158,3949,3490,6569,8722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5243,2697,54577,54968,9759,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,54600,2034,929,5250,9572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7167,5188,356,2247,85569,54704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2948,6402,205327,5594,3507,51604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 432369,3939,4299,10559,1361,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2524,581,55005,10019,9382,26227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 145264,29929,162417,169792,355,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,7450,51119,5291,6382,728294
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,249,3958,6390,10159,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5189,405,189,1890,50674,23474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,2787,5601,3098,11096,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,6198,581,183,7056,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1802,51738,27344,2647,7528,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,100130015,55024,4337,5195,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8932,3948,203859,339,2745,5052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,5105,285126,4726,6794,65993
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,57048,138050,104909134,5126,1544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 341,1203,1394,5444,23516,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,151,6535,10128,197,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5350,1646,51052,406982,5836,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,183,1956,6519,7919,4712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,2888,5443,23753,91869,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,513,2864,4159,6906,3123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,6521,1185,3995,6390,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7172,10352,8772,7345,23654,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197322,2303,9507,8813,11132,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,5562,1641,9420,1607,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,10842,4149,10841,64116,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,440503,3113,1345,79934,5160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51608,4864,9507,7295,1557,5770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6569,341,2639,132,2308,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 340024,26521,11131,137682,1812,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,6648,84557,7056,10537,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,5501,51079,1509,6868,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,3728,10250,64801,4247,686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79633,38,6387,2790,51119,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,1801,7057,1435,3162,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,6261,6519,7076,10724,92667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55863,79585,56938,463,1027,4729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,3030,4878,3606,200205,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,64801,1355,178,594,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,54539,5925,26503,11136,3115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 210,1798,79783,137682,2673,7320
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,4247,2888,11019,427,5584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5328,1675,2745,6696,1910,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,50943,92667,2632,55503,54704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,2677,266,23038,57620,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,5727,3938,6770,2161,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728,9415,4502,572,4715,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,2155,51116,407004,1361,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,28976,27329,2720,90865,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440138,6891,336,858,1636,1734
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131118,51176,2063,825,5176,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,25821,1436,283459,129787,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,55937,5580,8813,3066,7325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,123283,1789,9388,388585,2158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,3554,643181,2712,2303,5950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,3062,1641,183,27247,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,4899,1543,7035,2310,490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3032,79944,4149,5286,275,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80070,51601,2903,9056,5191,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7025,23410,4247,56922,57104,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,1499,50507,9388,6834,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2161,3312,654,148738,85365,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,2118,80201,389692,1678,518
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 538,7056,79776,3980,729230,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,23038,2305,6890,836,5723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4137,9076,338,2778,4688,126328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2896,840,23274,129787,1230,6649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,5126,5019,208,8877,3651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,29880,7284,5346,79776,788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,10999,23516,5274,1968,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1514,7077,7295,498,10642,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,336,91869,3708,2572,2305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3988,55526,3033,5365,9131,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6678,64131,6521,1374,2584,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,2559,5950,2776,7916,56052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,3899,406906,6329,1435,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,1028,5727,80224,8567,87178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5286,6356,3098,407010,26762,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,1444,1371,10383,6821,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,6505,80331,2109,4694,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,3101,6938,1801,353500,4285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 31,7424,2100,3991,2903,201305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5346,5787,6319,6390,111240474,4878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,54106,1734,101180976,1436,617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79587,22796,7132,7431,205327,7030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2890,2888,3643,10019,81033,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 708,7325,148979,2597,729238,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,24147,255231,5346,54476,55331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,6696,6492,100,120227,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,189,51206,8842,3667,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 886,5236,10935,5054,2157,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,207,83548,170302,5444,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,2158,2729,496,6356,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23543,22845,491,147007,51083,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,6347,6834,463,440138,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30061,6616,7450,3382,5515,2628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,330,8642,5188,5330,26227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,1490,4729,80201,3339,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 33,1355,56623,56919,9409,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,940,57620,25974,7284,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,7098,6582,158,55034,406934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 493,339,4853,2835,4780,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,1798,1185,389692,4023,27010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,54575,2647,4143,3062,51
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,5078,5191,4543,9663,10229
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
75.18 1.93 77.25
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.75 | 0.06 | 1.77 | |