Mustafa Erhan Ozer
| Snapshot Date: 2025-03-03 13:00 -0500 (Mon, 03 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-06 12:07 -0500 (Thu, 06 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4769 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4504 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4527 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4480 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4416 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-04 06:53:33 -0500 (Tue, 04 Mar 2025) |
| EndedAt: 2025-03-04 06:59:40 -0500 (Tue, 04 Mar 2025) |
| EllapsedTime: 367.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5443,80070,8722,5009,18,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,26517,5789,5071,5277,53346
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,2395,3162,2542,8842,3308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,5970,2161,55970,8942,51548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8648,7026,55858,54982,3779,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,1718,2118,435,7167,5122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,5370,1906,63892,239,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200810,56923,367,9445,486,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,10682,4312,51738,3170,8879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,4233,4879,23400,1524,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,10841,344,476,1337,6888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,1583,3558,64241,54577,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,8842,9997,57505,3685,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,6696,9512,7097,84705,3251
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,4758,100128525,2864,3670,84705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,2762,7124,3995,8818,50484
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,5052,2587,650,23175,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,4719,4524,9021,55503,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6934,91647,644096,10874,28958,10102
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 929,29843,407045,1601,4125,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1327,79587,6009,283459,599,151306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22978,170302,2949,9374,5126,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,1595,6351,2056,132158,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,56997,4524,155,55343,9332
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,410,54798,200205,54148,2495
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23753,5239,3606,2271,5713,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,836,26762,10379,23654,51092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64801,407009,3643,51649,5506,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55532,581,56999,7037,3141,4313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 185,6198,9429,3081,7056,10250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51,7350,10352,6505,513,56938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,25839,1813,3032,1201,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4705,653,655,89874,4860,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,3240,3358,150,5445,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6492,5054,10577,4544,389692,79133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5618,498,2804,388962,656,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11213,5161,1363,26517,10379,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57001,4160,9559,3934,1524,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,5798,1636,64900,358,3382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 231,54675,81034,133522,4543,8195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,4669,4524,291,929,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5798,5291,374291,4337,4547,2641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 793,57761,6522,6324,10845,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2582,5270,3992,79731,6263,101180976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51548,2984,9382,3416,3570,29960
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,2310,388372,10724,160428,1859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,7289,84947,819,8195,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4144,2875,80331,407045,55283,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,5967,57128,406937,57104,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,1071,56606,10911,5364,284958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,5091,1509,5243,6748,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,407021,64805,2793,54549,22933
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,407004,1889,5442,942,51548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4035,5078,3875,23590,5053,5950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,7225,585,1893,572,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,132158,708,54658,1807,25813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,3242,3712,84300,8772,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,54552,54476,7036,4288,8678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,23410,161247,10642,126328,6536
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,6338,10874,1606,79644,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,6464,203068,4719,2146,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,51293,9095,2695,3416,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 664,7428,1394,952,7048,513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,51649,57380,2115,5563,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4702,150,2572,91942,665,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1376,4925,6522,3558,3551,56606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83854,3813,4609,958,199,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55186,51458,8813,2760,200539,3423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5069,5618,2348,79001,5373,219
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2776,5594,1347,5176,29960,55967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,2638,4712,2950,8462,4149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3489,29947,105372280,4790,1369,2739
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2487,4714,316,8473,488,196385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3240,477,4247,130589,121268,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,2559,3600,5264,1373,6716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,9526,60684,718,7325,407011
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1601,51083,208,23543,32,2328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7450,55278,6649,24147,27249,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2919,285362,92667,4705,617,836
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4282,383,8942,116085,5406,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1806,137682,384,51119,55644,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1645,63899,6356,1650,5830,3251
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,5584,3636,5207,1355,2200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7428,64116,130120,10999,3382,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407004,6891,81704,5618,2799,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,2937,124976,27247,2717,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,1201,10226,51601,384,4012
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3931,130120,57505,3779,186,3293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,308,4306,91869,3576,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,3033,3293,10965,5054,3145
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2052,2762,1392,384,2335,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,79068,3779,4843,23400,585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,55863,27232,2628,4049,53345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 627,3643,6389,656,6582,540
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133396,10643,3417,10166,55343,3351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,539,26119,2247,4015,155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 48,1056,51128,3440,5250,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7167,1234,2581,8600,2984,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,2643,338328,2266,2864,207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5654,7409,7385,7076,25821,3586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10008,4524,1893,5250,4598,1644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,4683,5562,4719,51422,3673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2632,5071,6387,2683,57380,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,4351,153642,4760,10466,2244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,6929,1571,114814,3339,38
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,65993,125170,9630,9054,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131118,132001,5329,2710,847,51
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,407024,583,55024,9095,1270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,6387,518,26191,1675,10352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2581,1992,4358,32,2646,1347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,2588,3576,1584,79633,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2524,1537,55278,84987,6356,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51181,2762,5837,1585,3658,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22901,11096,116519,80224,9370,55768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,91942,2516,718,7325,5702
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.20 1.68 76.00
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.68 | 0.12 | 1.48 | |