Mustafa Erhan Ozer
| Snapshot Date: 2025-01-20 13:00 -0500 (Mon, 20 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-23 12:11 -0500 (Thu, 23 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4493 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-22 11:19:56 -0500 (Wed, 22 Jan 2025) |
| EndedAt: 2025-01-22 11:26:35 -0500 (Wed, 22 Jan 2025) |
| EllapsedTime: 399.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1594,55283,3759,2992,4723,788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55278,2542,6774,8714,5239,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3240,5228,23556,2628,50506,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,1436,23175,100303755,29926,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6948,3627,407009,64087,2588,23410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,169026,128486,11093,54576,2888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,572,1672,5644,3157,231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 115286,7124,4878,1581,7098,55572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5288,7035,6531,57176,201595,5321
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407010,1356,3060,2235,842,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 514,2310,7274,4846,801,326625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,596,4729,3358,5599,6550
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5105,1737,1769,1490,2694,57817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,84300,285126,590,27125,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64801,2673,80267,5122,54205,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,2834,26191,54205,585,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,161247,55526,3779,1650,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6445,23175,1182,1376,3383,23304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,9692,617,857,3033,517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,2119,3709,388,517,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6571,5126,3157,4338,583,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5192,2152,22868,4015,5250,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1182,7057,3382,842,374291,1355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1019,388753,114548,1340,6347,10642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,7132,7494,56922,4137,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,84557,11131,51004,388743,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,5009,10382,54901,26003,6262
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,29880,387,2155,5901,25821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51660,811,51611,2100,1444,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1675,4282,119559,6262,80070,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,11035,26503,5241,7390,2875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,28976,4779,54658,5830,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2584,4886,407010,6329,6565,54704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,8932,8942,85569,5052,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153642,23129,5365,1601,4160,2052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,718,387082,3954,2588,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,8722,1348,632,5727,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10379,132001,5188,941,7421,824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,2798,4760,54675,5730,3373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 359,6901,10059,2260,25821,718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65985,3358,8802,4040,4715,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3791,54982,706,2170,6261,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9388,2628,3638,5211,3667,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,216,7480,5962,10642,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3425,1802,5770,84557,1490,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3939,3875,32,25839,2348,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2063,5970,3685,5369,10116,2157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84557,55163,2788,112817,3570,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5184,23054,54802,348,2696,1201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,81570,26517,55278,4697,1175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,48,199,6833,105372280,10845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2146,84947,6324,4860,123,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1555,7132,128486,3551,1641,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56938,3383,6770,3485,3980,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,8678,4688,10166,6182,57511
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5193,5256,10874,6888,5295,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,26517,3586,5584,84701,1583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,92609,9180,5122,4719,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6329,6649,84300,5346,5288,4726
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132,350,28234,2949,64900,8722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,55343,788,1230,3123,118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,2937,89874,8854,10842,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3032,4143,7225,4282,9997,432369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 479,37,685,1646,518,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79644,3784,91942,80222,2581,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3033,6772,7252,4722,116931,253943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,23038,6329,1558,795,51293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,55644,23753,4023,6788,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,941,1471,7350,811,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,1356,1786,10166,6938,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,5723,9572,23369,5972,8462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,116150,80267,2835,1544,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,5372,57817,56923,285848,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23556,5313,105372280,2539,847,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1490,3091,1591,27010,3065,87178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5581,5428,23129,2697,4744,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23389,26291,11132,28958,5243,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,161247,1789,23516,26227,440138
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57817,51092,92609,2647,5315,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,56999,138050,7252,617,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,1992,80224,3479,126328,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,540,63899,83854,6262,1621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,57104,25828,6772,83854,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9479,54704,211,7287,1490,5195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,2328,79633,2180,23410,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9056,8813,27125,29968,7167,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,6576,516,29960,1649,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,6261,7252,2694,10352,100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,51119,5971,6515,5826,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6647,4233,60386,111240474,293,3141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1497,5825,200205,7528,255738,10999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2559,3703,84649,6403,493,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11096,1392,836,53335,867,3991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,185,3242,1340,55699,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11254,101180976,2308,166785,513,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,5053,388372,768239,4779,4502
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,63931,150,2055,5213,3949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50943,517,22933,2271,80070,6716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,3425,383,886,9559,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,23530,83854,1376,51083,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 87178,6351,54675,4023,51649,627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8600,57128,3480,1444,4684,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23600,9414,55937,5329,10135,1393
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,388962,91574,5160,435,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6198,5629,801,706,1182,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 105372280,2260,2115,7284,57511,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6513,7052,5925,11019,5702,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,1950,1201,266,84274,1591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5740,57048,407045,2834,56606,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,9560,63892,7351,627,6929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,55340,2791,836,5950,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,7350,3995,1339,5580,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,383,1356,563,132158,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,6464,5444,9076,54476,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83439,7381,10226,128486,4502,6928
--> return NULL...
2025-01-22 11:26:24.633 R[48413:152839957] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
128.984 1.383 131.485
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.988 | 0.053 | 1.517 | |