Mustafa Erhan Ozer
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:08 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-12-21 11:24:07 -0500 (Sat, 21 Dec 2024) |
| EndedAt: 2024-12-21 11:29:45 -0500 (Sat, 21 Dec 2024) |
| EllapsedTime: 338.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 26235,5071,3651,64432,1373,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,64919,11255,406934,51204,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7048,1027,4982,4851,56919,7018
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,1859,9445,81034,60,84649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,54802,790955,161247,65993,4723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,1442,3304,52,5175,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,3423,2146,339,11136,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,4855,5331,477,79644,10250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,3481,51,1491,1636,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7372,558,213,4299,199,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,5370,87178,3663,2695,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10965,9927,87178,55526,249,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 537,859,5971,1327,8473,5551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,6609,6786,5243,1401,241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,2720,1605,1608,51441,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,5787,64801,10059,10243,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6716,2328,7386,558,2524,1893
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,80347,51608,6569,6352,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2717,158,582,169792,10000,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 316,3033,1583,151,10938,5345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,3990,80331,5595,92935,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,347411,10,80224,6696,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5792,8675,5967,6448,25974,268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,5092,4306,54210,3673,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 376497,10857,3569,6929,8604,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,1956,8802,133522,432369,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 33,2642,51422,51441,2147,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,26235,6775,31,2778,6714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3920,6531,4159,6718,7351,53335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51099,10128,8743,7035,4502,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,57001,6389,26354,55186,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,23654,846,1859,8772,6616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407007,351,26227,6347,23400,2310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2055,2157,83548,652,7325,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,3156,1734,5167,462,8665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197131,8743,54805,5350,779,1594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,116519,80270,6927,284958,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 217,10874,9572,6514,7274,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,56729,1645,6566,1268,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407007,574447,1586,650,686,10874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,93587,2308,10875,8560,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,3356,6649,200539,463,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,3565,55186,406,54567,6402
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,4543,56919,5236,55750,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,5265,4000,10423,183,5444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,819,27141,81689,3692,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,347,2592,1116,23163,5160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,51082,111,10166,3123,1230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79158,55270,338328,4714,10730,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,10094,1581,383,8473,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55863,4684,130589,27125,4153,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3482,10667,56923,9968,1813,4153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,2787,57620,5563,64919,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1230,25915,4855,64919,63892,5192
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,5277,859,23543,6582,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 177,1586,6716,8842,55278,2694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27247,9968,5228,65993,10938,131118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,2539,5445,51316,1468,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,1586,64432,1201,54205,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54549,178,686,4728,406906,5257
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,4118,388585,23304,9374,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,57380,551,51176,5825,27232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2309,4942,84062,57104,283459,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5192,6868,6571,5195,11136,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,56623,93587,3630,2820,729238
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,54344,3562,406938,26088,6721
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,6888,130589,4656,7355,201305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2158,8659,51052,9968,665,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10019,411,567,51316,123283,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 574447,285,1859,3658,51117,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 170302,5828,940,340024,1327,617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 517,7422,152078,11231,5836,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151306,492,5239,148738,344905,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4684,158,1555,5617,4669,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3673,655,3565,1345,3145,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4684,56919,56052,6811,3557,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7409,2784,54567,6564,3030,55065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55037,653509,4128,10911,89866,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,7225,4758,3945,63892,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 514,84947,55970,1072,7879,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5328,3030,60386,5447,27141,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3141,54331,9698,1608,4704,2063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3293,3304,338,640,6391,407008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,4552,5069,10965,1329,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1268,131118,3651,43,3773,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,51099,5080,196385,2641,2056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,2739,7381,6928,4015,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,1019,5193,10423,539,8639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26088,2593,2119,3295,256471,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,79001,2908,1803,200810,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,3440,55037,54205,1352,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,130589,1803,488,55503,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,776,5364,4089,84317,5443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6932,10102,948,3598,8803,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,493753,353500,479,3141,3930
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7030,708,85476,162417,846,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,4669,6811,1347,4040,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57761,1490,6009,6609,5901,5789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3624,5239,1644,6678,8567,55186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,23411,4982,2799,150379,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1734,440138,1621,406937,1401,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,126328,367,407010,10599,142
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3074,100,54982,1543,178,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,5264,32,122961,3636,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8243,4758,5798,4314,359,161247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,5009,653509,7220,51601,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388372,51119,112817,26521,2632,2788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,54805,51422,9091,6445,9409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,54148,5660,56652,79133,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,3295,54552,359,5825,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,1646,2785,1571,308,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2646,7248,5288,9927,8942,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,191,5581,1801,2597,3931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,79934,57620,2948,627,4286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4049,5562,150,256471,6448,642489
--> return NULL...
2024-12-21 11:29:35.351 R[28012:82040881] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.025 1.006 75.690
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.983 | 0.038 | 1.684 | |