Mustafa Erhan Ozer
| Snapshot Date: 2025-03-03 13:00 -0500 (Mon, 03 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-06 12:11 -0500 (Thu, 06 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4769 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4504 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4527 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4480 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4416 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-05 11:32:43 -0500 (Wed, 05 Mar 2025) |
| EndedAt: 2025-03-05 11:38:24 -0500 (Wed, 05 Mar 2025) |
| EllapsedTime: 341.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6248,5826,65993,10616,6262,23369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5327,359,6582,5175,1803,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,6565,1182,29880,221935,540
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5068,1889,387082,137994,5660,138050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1869,3290,112817,51548,11019,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,51094,1374,26227,6402,27141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 391051,599,1340,100131801,3156,5080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10166,1588,1649,63892,3382,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1605,3032,1499,2034,325,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3606,1200,407011,118,6649,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,196385,2266,1200,2152,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,6382,7528,686,4713,7018
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,1346,6569,57176,1583,2063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3992,8854,9091,8818,23395,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,1992,10616,11213,1071,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,81033,1582,2784,5105,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,6565,29881,6329,581,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,2593,7297,9451,5618,3329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1678,11231,1392,948,25821,3295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,2952,1544,4544,1558,8841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3339,3952,200205,1514,9104,23304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,64240,5195,6505,116150,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,4149,94235,81570,51608,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407010,7386,825,81689,7025,842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,2584,79776,1508,5799,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,5236,170302,1312,84705,1893
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,221935,2034,10644,4232,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2799,22796,152926,7450,63874,150379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56999,5860,10682,7040,84300,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,54575,149775,6183,4286,27249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54476,25821,1769,1812,89866,27232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3157,2638,1589,3630,84706,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,6391,506,2335,2645,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,5228,389,9575,54675,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84317,25813,54798,6714,6718,2516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8243,79572,128486,56997,594,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,24147,29968,50814,4548,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,1571,1277,79633,84275,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6584,948,6833,8517,7157,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,2791,387082,51004,2864,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,29968,166785,4694,104909134,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10730,64241,79731,55858,718,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5625,33,4879,211,4351,4854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,2310,84062,29928,868,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8694,51608,11096,104,64241,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,80207,387,10128,4694,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,4855,6868,8813,54896,53905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 161247,1734,3460,3710,2588,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,6445,1589,55024,60,7325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5160,857,9365,64240,387787,3920
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,10753,3559,53335,51293,60528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,498,275,56623,7390,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5350,4842,5256,330,6906,22852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,406,3482,4023,6356,5161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,7019,6347,5501,1734,138050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7412,9131,6696,656,498,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2548,5122,1489,50943,10379,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,211,5580,6391,56945,654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4758,388585,2695,57817,563,120227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,2643,9056,79068,2739,2647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6445,84693,4702,9445,26354,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57817,28958,55486,5825,79133,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,3570,407010,64900,181,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,4758,55630,929,348,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,283120,2717,587,54806,51441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55186,3945,51611,10166,344905,1893
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 137682,326625,56623,55340,728294,23291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,5274,80347,54600,84833,3145
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,11035,388372,5250,2760,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,10457,63892,7528,55572,55005
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,4976,5095,6535,7515,9572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,285848,5365,53905,3988,3663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1798,6786,6389,7284,5364,5373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,7841,284958,5265,2998,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,23389,23062,2767,3929,94235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3767,4700,4247,4976,22820,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,10269,65993,4286,718,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10295,291,3081,10423,285,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,3995,10857,23590,9409,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,5654,54567,4012,158,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2947,5563,9512,790955,2784,2517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 350,1992,407021,8050,208,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,4715,56848,201305,7494,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,203,8517,10295,6519,407024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,133396,10013,6714,7428,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,4729,92935,2947,54968,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,644974,2904,326625,1508,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,6908,54577,1444,407008,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133,101180976,130589,476,6770,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407040,643181,3483,55163,4967,1355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9507,5599,875,3375,4668,445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203068,54106,5257,63892,4702,7225
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5468,1524,2539,9429,5970,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5473,10226,4860,83884,376497,57192
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10195,133396,84987,7915,90624,795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 219,409,7381,3990,79661,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,821,1555,54575,2161,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54549,213,3507,27089,5499,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338821,5095,5631,2694,353,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,4319,55818,1022,867,1629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55858,23590,5241,27089,821,100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65985,4887,5590,23410,10559,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,3170,1812,6392,5105,53632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,7879,3158,8942,4851,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1593,5654,650,1769,1893,90865
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,2798,2896,3606,4709,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,6448,10724,462,9759,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2584,84334,1022,79602,3091,6324
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160287,51316,229,3416,3931,213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,57620,665,6868,517,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,1555,11232,6390,2998,3717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,79776,27329,8604,7276,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,2688,26291,8945,5799,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,54476,7351,84572,23590,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,627,7167,84557,56997,4358
--> return NULL...
2025-03-05 11:38:13.403 R[50157:268230483] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.040 1.127 75.799
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.988 | 0.036 | 1.430 | |