Mustafa Erhan Ozer
| Snapshot Date: 2025-01-30 13:00 -0500 (Thu, 30 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-03 12:06 -0500 (Mon, 03 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4400 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-31 02:52:31 -0500 (Fri, 31 Jan 2025) |
| EndedAt: 2025-01-31 02:57:16 -0500 (Fri, 31 Jan 2025) |
| EllapsedTime: 284.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 3990,3073,1956,84902,253559,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6897,4314,9945,64116,23410,23395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10316,5176,2791,5161,2639,285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,2516,3948,2683,56997,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,1374,347,6571,5588,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,133396,406,3779,10845,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,115286,5286,3290,149461,79633
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,5599,7036,9868,5214,2696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,1956,4889,4968,9607,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,3458,79944,1327,2542,4828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,56997,27125,3708,347,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,79736,6389,2152,10423,2835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,6342,7480,3074,7037,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,5190,10013,5367,4126,55486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,56259,4712,54210,6464,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,509,7035,10229,56922,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,5830,10102,1339,3060,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,1185,55343,387787,112817,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,3586,147007,409,2113,718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,89874,177,5194,80201,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,356,2712,255231,8665,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85365,594,7052,4000,200205,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,90480,5476,162417,5207,1815
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1468,3600,3440,479,11136,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111240474,10116,9076,1769,23411,5068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55526,5713,7355,183,160287,7054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7424,3242,7347,10295,5828,3783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9559,2710,5590,9382,55902,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,4887,6833,92483,54344,2678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,9663,491,3357,2152,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,4247,1524,35,126328,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,4247,2146,84902,5563,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,516,79949,406937,7351,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,4598,137994,64131,3783,51092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,83884,2169,6678,4728,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2588,5442,3953,406906,201595,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,51099,131669,5191,5723,2792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,1621,5538,358,81033,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,486,7840,490,57511,2683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6715,54539,2157,79572,37,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,4656,7030,1312,3077,5192
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,7124,57048,4723,23236,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 15,64241,1281,5288,5350,2548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5594,2787,5805,2064,115286,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5191,3708,5105,8678,9575,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23236,3309,9507,3554,5184,293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,79001,3685,5071,2785,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,3551,199,55902,4803,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,1208,63931,23054,55503,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,10094,406938,1436,255231,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,51441,284184,388753,5189,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3293,7035,3145,6262,6387,51004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3773,81704,1606,5826,2944,2629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,4855,5787,6566,387082,2740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63899,29880,1906,4319,6514,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,149461,3157,51083,5713,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4852,1906,3373,706,63892,4988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54576,197,2710,63899,1591,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,30061,3082,3980,8202,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,1072,9759,91647,3703,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 231,347411,3158,123263,9927,570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,54210,51085,10841,406947,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,6811,4967,2194,155,2834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,1348,8660,1582,275,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80224,6834,2788,54931,91452,2055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,19,2034,11213,5837,10965
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,617,1798,241,2934,407007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 340024,6383,4899,7352,4967,7389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10,38,5211,3074,5192,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 405,7915,3767,90865,54901,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51092,3458,57817,5189,55340,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,367,6319,1071,54982,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5442,6901,5105,115286,79602,9409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57107,93587,2835,5270,26503,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7284,255231,9420,130589,3954,169792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 316,940,3250,23417,100128525,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 540,3931,91574,121268,84705,3373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,19,268,3562,411,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10857,4609,5799,5445,8772,4337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406982,1442,9374,5919,3600,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4704,55572,10316,391051,10457,3991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6565,941,80222,177,3482,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80331,89866,4852,2790,5506,1678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6948,22978,125988,123099,10580,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,3295,686,5826,2305,1022
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,3930,100506742,5727,5257,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,4357,123263,2334,2717,5473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4153,6696,1803,27089,1497,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,590,112817,2847,316,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,84239,1807,60528,131669,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,1649,570,54896,3170,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10965,134,790,101180976,3418,83854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8309,4149,1956,10644,1514,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2591,123,942,148738,116085,326625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 868,729238,4790,79585,8431,4967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5276,344,80207,79133,10457,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5770,116150,1270,23054,3630,2055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1244,376497,23462,4714,9512,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,790,3113,9919,5428,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132001,406938,26088,1585,28976,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,5770,1436,493,8678,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5723,3991,151306,10935,790,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57818,407004,7289,6833,2762,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,3308,116150,5826,574447,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10013,5743,5122,9021,3490,2788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84889,653,7025,55343,411,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,7355,1675,23753,4598,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6402,83884,627,23753,3643,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,93587,6009,2056,2739,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,1352,3417,7325,132001,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 487,347,100506742,1956,4719,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,54915,130120,3425,3767,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,92935,5447,4256,6554,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1606,54205,26088,158,9380,231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1436,3251,80339,158,93587,3553
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
65.326 1.584 67.021
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.629 | 0.052 | 3.849 | |