Mustafa Erhan Ozer
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:04 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-12-20 06:01:22 -0500 (Fri, 20 Dec 2024) |
| EndedAt: 2024-12-20 06:06:08 -0500 (Fri, 20 Dec 2024) |
| EllapsedTime: 286.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4702,5331,384,177,4311,1645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 374291,2109,111240474,3382,10165,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2646,1893,338328,3101,197,3992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,51103,1327,1072,582,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,5122,175,6616,1557,87178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,133,338328,91574,2793,5328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54600,54539,7172,6439,5214,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3709,1374,6868,22845,100529063,1716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1813,1409,79053,2100,11096,1737
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,5825,1409,3119,54901,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,56922,249,2538,140803,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,79731,4311,708,1992,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,156,4843,1644,57620,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2791,22933,7289,5830,3283,9370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,3630,796,388585,4318,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,4854,1843,23462,91574,6513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3795,2762,487,3570,51660,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79644,3034,51181,51608,6788,3980
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,161247,2638,7421,10753,4760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5625,7840,285362,56623,2776,4889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,23369,5327,796,28958,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,1859,6402,4256,54806,2903
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,161247,5105,1909,29947,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10842,84317,7026,2952,4702,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,10965,1373,10243,599,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,285,3101,50943,435,2647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,5261,57001,2864,1950,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,432369,79644,6888,1312,6390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,2314,4548,779,5789,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 335,92667,3030,201305,7471,2946
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4609,8743,149461,1353,189,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,3486,3295,6748,2628,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 518,116150,1371,8799,4153,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,4860,55532,292,496,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 498,7084,10730,55278,3651,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2799,55768,1244,2638,2790,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,64240,7407,6383,1621,160428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,89866,4035,57505,2538,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,6009,3929,406947,5330,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80201,3759,1149,219,29880,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2693,27249,6569,538,572,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 867,51604,55902,10352,1524,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,1950,51316,3995,3122,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5837,8504,6890,5617,5369,1329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4720,5467,487,85476,4982,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,83985,5095,1950,4319,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,5295,5189,941,22797,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8813,2792,8772,6492,10295,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,5195,6390,2806,2099,6340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7347,7390,3373,1080,3596,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,6401,5713,3759,513,55278
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,7471,84447,2788,48,5617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57678,5781,27429,3712,57107,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2524,5950,54704,23038,8651,643181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,92609,4598,5167,4720,718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,51204,79144,5331,2638,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,7019,2200,3141,2334,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,4942,2305,2785,28957,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,5625,19,11096,153642,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57104,2745,8722,9607,652,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 115286,6513,51079,1606,4609,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65985,3958,9131,7352,2260,10102
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 156,55278,2475,54600,2243,2305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4089,5730,8722,6390,56623,133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,9370,2159,8639,6714,6392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,875,776,3995,516,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,388585,123099,7390,51604,4153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5702,229,6718,1909,5745,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2115,6342,104,27089,7388,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,9927,3099,7471,2934,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,347,7018,3418,6519,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4089,7297,85476,3351,10580,3651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2194,351,8694,1645,54148,2591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4700,57176,1373,3939,51176,1347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,1909,55065,5188,268,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,111240474,4543,3482,7424,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1801,27010,5276,6183,9479,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,3703,23304,5331,5579,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,25821,79934,6906,81689,8678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,54982,5346,1116,2158,7097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,241,3123,125170,2642,7422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 506,10243,6938,55331,1557,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,84693,100,7026,53335,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5255,4683,7275,162417,6582,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,10221,3813,1909,5860,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,1869,199,54915,4118,9415
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,361,4118,3482,7225,285126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,4854,10559,4313,11019,4358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203859,55526,3557,594,3358,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,80070,7025,6811,31,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6352,81704,51608,53346,795,54901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2006,79602,81704,7054,3087,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1351,81033,7325,929,336,3091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23556,4040,27141,3507,9512,55278
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,4942,207,1022,2847,563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1869,10157,153,1537,2581,51478
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,4668,2638,6338,1277,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,54809,3242,796,383,92483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,3460,1376,51604,2161,2584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,338821,5078,1806,3416,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,5617,7528,90865,25813,84649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5092,129787,10965,91452,5071,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,336,1593,8877,391051,2638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,48,2878,3576,5228,178
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,3172,203,216,640,491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 356,1393,51241,2203,517,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6374,3759,1890,5789,2055,8600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3636,3980,231,90624,7480,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,1244,2677,2517,7515,6898
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2542,51083,1270,11255,9021,5329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,84701,212,5241,4160,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 107075310,594,3283,4724,22820,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84889,8604,130589,6329,685,4780
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5306,2053,23163,3423,63931,255231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2200,8945,1436,6351,5581,84902
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
64.179 1.151 65.432
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.622 | 0.050 | 0.796 | |