Mustafa Erhan Ozer
| Snapshot Date: 2024-12-19 13:00 -0500 (Thu, 19 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-12-23 12:07 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-12-20 10:31:39 -0500 (Fri, 20 Dec 2024) |
| EndedAt: 2024-12-20 10:41:37 -0500 (Fri, 20 Dec 2024) |
| EllapsedTime: 597.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 1.373 0.076 7.958
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6925,1636,8567,255231,2677,1468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 128486,51117,644974,1435,1071,1593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,54148,4843,2334,57817,5741
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,6391,5723,11232,2328,1376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,55024,4860,1080,4137,84239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10379,2745,29881,1508,4000,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,54798,358,197131,100,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,35,6564,3423,2184,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27429,23389,121268,51608,80270,5444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,54567,100,582,7018,10316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4973,491,1268,1893,4851,4598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,388,6678,9451,5230,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,55283,3099,6550,2647,64116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,653509,56729,107075310,200810,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 125170,55037,1585,5919,1340,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,407006,208,2643,5274,116150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,285,4153,55331,10466,490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5176,133396,2309,2194,79053,2847
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,801,30061,5445,8854,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,22796,4594,54539,1606,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26060,1728,5830,2487,101180976,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23600,50506,6351,55163,4285,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,27429,339,5467,836,6770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1327,3507,6566,4684,4232,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,5967,7355,10116,3066,7480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4879,5261,255231,116228,10857,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,3930,389692,11231,8243,2328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6584,2683,2695,57620,216,2678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,388,64131,23516,8841,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,514,7389,353500,10874,1544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,53335,79068,118,23175,10874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,84274,29928,387,55858,64432
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,22901,885,29881,64601,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9021,10157,51241,9054,4712,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,196385,345,105372280,3708,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 158,2904,6476,80222,151306,63874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6571,3658,5176,84274,407007,1208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3417,4502,197131,7372,285126,5176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,1593,1672,10457,255738,656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,51608,253943,5727,1182,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,2538,6579,5257,1956,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,5126,344905,8877,6925,3077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1468,55034,5364,80222,8243,4669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,2169,84447,4118,3309,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2950,1351,10965,729238,26191,10059
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51082,255231,26354,52,50674,1524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,255308,4726,3624,2805,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,3382,5211,54476,7350,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285,2099,64805,211,7386,2712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,3930,5331,6721,79087,5592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,255308,3077,54704,79158,54805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,133,9945,355,3312,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84317,7498,6647,3172,5617,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387,8504,655,7879,7498,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6569,51144,8799,5836,54805,80270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,3562,406982,599,10466,3295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,7352,5071,3423,506,407010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,9971,2592,9382,10295,6342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3066,26517,6774,4724,4722,4285
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,401,54915,11131,4976,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,1803,84693,3576,4288,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7132,154,1493,4846,1327,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55532,4973,1394,572,407008,6519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,60,1815,51548,7421,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4627,64241,3658,23291,23410,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56729,410,1869,5744,11255,2271
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55024,1757,199,2934,51092,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 359,435,2694,2638,132,51092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,5551,63899,3709,2235,63874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,3485,4159,93587,6515,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2717,4040,3991,728294,388962,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1585,3490,5176,11093,8877,197131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,513,8659,5255,51601,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3074,253943,79572,3692,6382,9021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,3119,4256,3295,665,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,10938,409,7319,2113,51241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6262,795,4233,5563,2949,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,6721,2792,10243,5727,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,9692,344,57104,10379,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,265,5315,37,10874,627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27235,10295,493,5743,5621,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10379,1071,28951,4143,768239,5328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,56729,31,2584,5442,4669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4282,137994,356,5122,3290,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,1363,2645,10616,406913,191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,2639,490,50674,64805,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,593,3480,1812,7295,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,26175,5741,3685,5579,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65080,406934,3375,8651,7389,3030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,5256,5967,1543,3034,6402
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51293,1373,5236,1029,2169,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6236,2888,3101,5092,4318,3054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,6775,2984,4137,6550,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,10243,3122,2247,2034,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,2984,10243,7225,9104,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,1843,3980,84239,5255,9559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,7276,7038,6521,3283,1737
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,5970,79934,57048,56999,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,3251,1634,79731,79572,2157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,5327,9054,137682,80224,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11222,5925,3357,85365,4306,9377
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,10157,793,9180,5068,2804
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,593,23236,114548,51601,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,4973,2203,5184,2194,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,2348,1436,1589,26235,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 336,686,9698,344,941,768239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1149,8600,2793,2864,4543,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,1374,3988,27429,7431,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407009,55630,492,4853,6934,3784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,594,627,54106,51241,1072
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,2641,7084,1393,6579,93587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,84706,51604,6536,10383,3123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,3122,5091,6948,1442,6564
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,6521,5972,388372,5595,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92483,64919,79158,3658,10116,1757
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
104.772 2.078 109.086
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.373 | 0.076 | 7.958 | |