Mustafa Erhan Ozer
| Snapshot Date: 2025-03-03 13:00 -0500 (Mon, 03 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-06 12:09 -0500 (Thu, 06 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4769 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4504 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4527 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4480 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4416 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-04 11:10:32 -0500 (Tue, 04 Mar 2025) |
| EndedAt: 2025-03-04 11:20:24 -0500 (Tue, 04 Mar 2025) |
| EllapsedTime: 592.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 1.368 0.076 8.007
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 7389,266,3423,7252,2157,2739
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,316,149775,5330,57511,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,3643,6382,4697,1601,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6901,2784,283120,3145,151306,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 37,1584,4627,2847,517,5095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,3375,388372,2729,29926,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6868,4718,5350,4312,2582,4149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27232,7167,8600,123263,119559,6009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,51081,6550,51082,79736,128486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 409,9241,2108,5770,83693,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5428,81704,5162,2303,8842,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9560,3779,22901,51052,10616,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84902,6569,5617,26354,886,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 471,249,5080,6519,5702,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,9332,9759,2328,10667,5507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,427,57085,19,2100,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,3034,27141,5506,3728,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 336,84239,2950,3030,7941,55186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5080,5243,3938,80222,1497,5798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57511,2767,18,51004,9969,51478
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 350,3576,517,84987,6616,1056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,51081,55526,3293,4886,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,5538,5971,212,1607,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,3558,87178,8659,1634,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54902,90865,54567,25828,5276,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152926,3995,5167,169792,2591,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,2516,5962,3988,1493,145264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3329,10383,52,79572,156,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30061,387,83548,1582,1339,3624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,1468,5805,5745,56999,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 58528,60684,80347,142,1803,4846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4137,796,54809,1468,2934,2539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,6338,2119,2538,7225,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1734,4724,2243,572,4143,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,4729,5967,491,7388,7941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,2677,23462,29968,50506,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151,80347,9559,6934,6519,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,5825,5590,1815,5167,2147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5211,5770,330,7036,91942,2639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 359,9479,5621,54577,440503,64801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,1369,2055,51293,145264,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,1444,2118,5962,5473,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5175,846,886,8309,55699,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,25974,1116,80270,2998,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3559,1363,8195,90865,8772,6548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,929,644096,149775,4976,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,650,10682,100529063,55788,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,57511,5331,10730,4544,2587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,5054,389692,384,80339,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,10667,3899,55967,55818,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,1353,54575,5091,52,7289
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5579,10845,2146,2113,7100,2159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5826,2904,26521,23369,5901,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2712,55970,31,175,3242,7916
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5369,231,4842,177,2159,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,79731,8309,5792,91452,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4853,374291,53335,134,54704,8877
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55163,6339,50943,847,8879,3600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7325,7841,55503,1555,6901,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3489,2271,29947,4153,384,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,2944,1629,2063,166785,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,718,1071,8942,5798,6182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,7466,6464,3708,2947,84061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4319,54982,57128,84062,1355,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,7292,2146,1347,152078,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,79661,8722,5473,9663,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,4318,92609,205327,7252,33
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,22933,868,2243,1514,51458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1208,6908,291,3938,4023,2947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,11231,1586,5837,80267,55670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,5167,51241,1019,51,23236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,1268,3685,56999,5702,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,114814,1593,8862,57761,1802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51441,3062,10382,23062,2937,488
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,112817,4694,3172,570,161247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5175,2101,583,3481,7019,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,7528,7297,90865,2947,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10911,6811,2690,9698,1230,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1717,2147,3034,6565,384,4702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57048,868,7026,5971,4973,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 361,5594,3339,7471,8473,57215
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,81689,10845,9420,11132,388585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,4967,2280,3667,5009,3172
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,3980,3157,4720,54539,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,1200,54915,169792,54567,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,7056,2946,79087,6647,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7325,23417,3929,56729,1353,5255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1802,2280,5428,1906,5274,28976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3312,3373,6582,7372,2559,801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9692,9969,3425,1544,79644,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4502,5631,65993,200539,8050,6354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,2908,3122,8660,4886,5925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1807,51052,138050,1509,50674,3062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,9572,858,471,7422,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6576,7412,2203,51052,50674,3091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111240474,2101,27125,1499,7372,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,84062,4988,9380,1327,706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,5373,6522,4684,3113,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4143,51738,4864,5787,7084,6929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3565,83693,57107,116150,1374,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 113235,2587,9868,10135,6403,1956
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132001,941,3596,387,3658,137682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,186,2180,91942,5139,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,2006,4695,3596,85476,1717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 718,101180976,3553,2524,51004,53632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,3784,5306,55788,25839,3312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,23304,1493,3990,55788,54552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6536,355,23410,7390,1644,7424
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1340,79736,63874,3596,2591,5080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,7388,308,1812,26517,3293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,208,27344,55858,2944,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2559,338,7498,10020,6811,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,2266,10316,6374,10383,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,347411,3304,493753,6550,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,1508,4729,9445,4719,6934
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
106.000 2.072 110.627
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.368 | 0.076 | 8.007 | |