Mustafa Erhan Ozer
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:33 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-04-01 10:02:09 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 10:11:53 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 584.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 325,1678,5139,54578,22797,10295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1200,6476,10382,4128,80201,2629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 788,7054,1524,10423,2834,1436
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,55753,7248,1738,2678,4012
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29843,5473,3920,79144,2184,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64805,6888,3357,197,7480,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,1393,137682,23062,9104,5122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56606,3953,149461,7026,9382,4338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3667,4548,64919,999,2101,5447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,3930,10,2739,3098,6262
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8743,2792,10226,2395,582,57215
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,2110,91452,53905,3242,6718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,6341,51085,2581,2308,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2034,197322,836,7916,5444,10
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,57817,64788,8842,54896,3356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,9698,22901,181,2109,4149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,7248,1629,7100,6890,10382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,2936,3773,123,4282,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,10644,133396,3990,231,1277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7289,3791,79731,3159,2203,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,64788,6569,364,25813,3283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,116228,150,2643,81570,387787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,942,23062,56999,5741,50674
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 140803,325,10352,5506,25821,2152
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 208,92483,26227,56729,3312,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54901,6786,2752,83854,5346,1509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8841,51176,3931,3458,2694,2055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5261,3383,34,3356,9692,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150379,4306,22796,581,6183,149461
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,51608,22820,407021,4779,8473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3329,1802,5571,1581,84649,3481
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,5595,948,1789,10382,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,3033,4790,476,7916,64116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,10559,5068,84447,539,3692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 664,2572,79587,5071,445,2946
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57176,7942,275,253559,29078,5019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1277,1497,5069,2572,2280,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8504,7376,1508,55278,29947,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,29947,53346,4722,10000,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79587,776,1672,5562,10891,3382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,54344,1352,55065,3795,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407004,11131,3119,4126,1200,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1436,1497,1508,81689,3784,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,6938,84300,26291,3460,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9479,654,56606,124976,28951,514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,4023,655,347,3423,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,594,63874,1080,55970,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8473,10642,10221,3383,55270,6927
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7035,1644,941,4137,150379,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3119,3991,84274,407021,51117,2875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2271,124454,6678,4724,54901,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9507,2538,84342,4159,200186,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 867,2260,6505,4160,7036,37
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 355,57107,1593,6774,406938,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,84274,1116,8743,5241,656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5261,27141,116150,3773,2688,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,6932,406906,316,51316,4023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,409,5092,3033,4925,5095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,1203,1327,6347,339,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,6696,9512,3115,1436,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5286,5465,356,284184,3600,10157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,6569,6788,10195,10135,1803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 929,3952,4712,83854,6564,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51660,406938,1268,9131,123,4049
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,432369,7879,6448,493753,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8202,344,5563,1956,10642,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,7385,5315,1270,5191,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,6897,22852,23556,1028,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3553,2157,10195,2896,23462,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4286,213,6263,10730,85365,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,51441,85479,3309,5515,407010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,152078,6576,57380,388,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,6770,2647,3117,197131,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,3383,387082,10116,3920,1717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2169,79053,51021,8665,55034,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,54549,1436,2581,22820,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,1268,1281,7841,51079,5950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6932,9559,4694,5162,3700,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10008,513,2793,6391,90624,22933
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 664,2582,1718,51458,5095,79585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,3382,389,5241,3645,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3988,5365,51649,2159,5743,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 857,7319,6236,537,4716,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9054,1351,51092,10195,1716,1843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,253559,1543,9607,4982,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,596,15,10911,3030,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,2487,4684,2169,3117,84557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,26088,1798,4942,5095,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,2064,326625,8431,4502,3899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,2695,1232,51738,7376,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5265,11035,11213,100131801,1514,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,6521,27010,93587,496,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,2908,26291,2694,868,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22901,284958,2752,197322,54915,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10,2235,22933,3480,549,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5792,1394,51081,3991,5291,84300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55283,23411,1080,4925,2788,51611
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,2950,5571,1786,4126,4306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,2034,55699,2876,100506742,200205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,2395,64805,407008,79572,7480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 208,54344,5551,5277,154,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,4728,7220,205327,5972,2641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1363,2184,3054,3978,7100,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,84447,51128,2896,84947,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3559,93587,9692,2597,3624,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2834,191,56729,407040,8675,175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,2309,84275,5428,10020,2161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,28957,406982,3101,5071,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,8517,2516,51601,5799,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6714,2778,5723,100,219,1468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3929,8473,104909134,5443,29960,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,6821,4967,7422,340024,55572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,23400,1327,104,5447,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26503,1968,650,4118,5372,7389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,1509,5745,3627,779,153
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
106.142 2.058 110.350
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.400 | 0.075 | 2.003 | |