Mustafa Erhan Ozer
| Snapshot Date: 2025-01-27 13:40 -0500 (Mon, 27 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-28 11:48 -0500 (Tue, 28 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4659 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4454 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4465 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4419 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4409 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2091/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-28 15:56:20 -0000 (Tue, 28 Jan 2025) |
| EndedAt: 2025-01-28 16:05:11 -0000 (Tue, 28 Jan 2025) |
| EllapsedTime: 530.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ...Warning: program compiled against libxml 212 using older 211
OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 0.912 0.05 58.53
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2720,3295,7037,27429,6531,3813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 590,145264,1514,8945,2159,10379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,7289,1571,8202,5052,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,3304,4887,22796,51085,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,7325,406937,200186,958,4760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,23163,768239,7276,2587,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 718,1728,513,23395,3250,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4719,231,10580,79144,2890,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,11131,10457,128486,27429,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 125170,5265,18,3899,5740,4729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,7428,1337,85479,175,3490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,7099,3899,79572,2690,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2152,2303,26762,2538,6569,53335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4125,2487,593,5515,84340,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7018,56848,90624,5276,10874,54148
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,5972,496,7840,811,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11213,336,3658,104909134,5972,316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,6351,487,11255,5255,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54567,23304,200539,9056,7220,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9451,3486,3636,10938,1277,1509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,2161,2908,2064,51458,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,56052,7084,3170,462,1803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,5293,51024,1201,51204,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,5950,407045,3073,5744,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,9779,104,84275,212,8714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,29929,1583,3767,7052,9104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,5250,51081,55967,2581,26517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,6564,50506,929,1282,5370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,201305,5286,23400,9969,5313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63931,1232,11095,9479,8462,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,6564,10457,9131,1071,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,3304,2152,7424,5962,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,29960,2984,842,407024,55670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,156,81034,3158,5207,2786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5161,8243,1585,50484,10999,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,5473,8659,10842,57017,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5365,85476,793,2100,34,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8743,347,51611,5194,2731,6576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,2641,836,5498,116519,4702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,407007,4609,55283,7037,2244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5327,2030,1537,1605,265,92935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407008,205327,7289,6198,5409,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,509,6901,5501,582,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51081,4852,26060,1327,83854,7035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,1149,1588,15,1186,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,92667,5256,406982,8431,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,401,6891,6897,5730,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1351,51085,85476,2628,6517,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,9672,3158,3077,825,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,54896,440138,2720,116519,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,170302,7289,29947,445,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,3483,51738,3062,462,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,3586,27089,3630,5860,2712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 293,3703,2653,92609,6906,57107
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7424,55278,9365,4285,9332,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,91949,57505,25828,4715,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7038,79158,203859,84239,6236,9572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,6571,2878,9663,1716,1813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,8648,3460,2778,10295,7385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,5507,948,64432,104909134,5175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,1268,2793,5828,26227,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2896,6392,2992,2147,2919,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7078,4153,1586,151306,231,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2792,27344,3773,6199,4853,51176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 567,57511,4668,84317,2678,2110
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,5330,2864,2673,2760,2762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,653,2762,350,79949,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,8803,1649,56652,10991,51458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 210,7220,6576,952,5345,3123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,123283,2908,6901,3113,5257
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 339,8600,10221,3658,4803,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,6383,23530,959,54331,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,4878,2683,708,6445,80224
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,2335,326625,84701,51117,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1514,2729,8567,2108,181,8202
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,26003,55572,133,27247,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29881,3242,411,1585,1373,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4337,200205,6786,2629,55283,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5723,201305,80207,5277,2745,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,10423,79158,3929,2194,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55283,148979,205327,10874,10352,1629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4968,558,104,54802,10999,9180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23411,7412,10686,6821,6352,3570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,22852,84317,3172,56052,54902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,6387,23163,999,5071,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,3627,1607,4713,3293,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11222,7078,90865,5160,133522,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,3980,7879,5188,1786,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6648,92609,55343,10102,1230,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,491,6383,9968,4159,2495
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2170,4899,4357,476,8879,10999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 886,7412,6898,56923,3416,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,8802,842,30061,10560,1351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5293,7225,55768,959,2799,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,9575,1543,388753,57505,7078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,129787,26003,51083,8243,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,63874,10724,1230,3416,7941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,54205,3339,54802,4137,338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 627,7391,151306,4314,345,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,6464,590,1678,53905,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,1075,599,6390,2632,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,4855,54344,7347,3779,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80222,2548,79633,90865,56606,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,563,2643,388962,3565,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5286,130589,56623,1813,387787,587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,54931,8604,836,491,2395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9095,4988,1589,819,959,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2309,540,6531,10466,3312,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5501,2266,84239,84275,85479,4879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5581,87178,3356,435,6696,2487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407010,2548,6788,2170,79731,4779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,147007,2798,1348,3929,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,3101,5467,4968,11136,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,7292,3119,2713,22820,2677
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,506,6531,51608,9971,4594
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
145.848 1.209 153.455
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.912 | 0.050 | 58.530 | |