Mustafa Erhan Ozer
| Snapshot Date: 2024-12-22 13:40 -0500 (Sun, 22 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-23 11:47 -0500 (Mon, 23 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2081/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2024-12-23 12:39:08 -0000 (Mon, 23 Dec 2024) |
| EndedAt: 2024-12-23 12:45:28 -0000 (Mon, 23 Dec 2024) |
| EllapsedTime: 380.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2024-11-24 r87369)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ...Warning: program compiled against libxml 212 using older 211
OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1149,4552,64805,3930,6649,1869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,4779,654,132158,1186,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,5373,3077,8560,4729,5465
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85365,56919,1950,51611,8642,53632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,6932,9507,1281,8567,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55858,411,1571,9971,54106,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8504,3141,8841,84701,3418,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,7225,2314,7167,10874,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5465,10379,23054,2646,462,491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4925,387787,2875,5346,2053,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,5161,268,2629,3074,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5476,549,84239,325,5740,2677
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8659,3709,55858,537,51293,6770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,55024,56623,2516,6696,9507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3952,5967,1801,1737,11035,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,2717,4684,123283,79644,7040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,123099,7276,1175,1807,4069
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4684,60,5071,55768,152078,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,1075,79585,6390,627,440503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1717,2805,57380,55753,708,10000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1401,445,583,5211,7025,131669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,7480,3082,1806,22796,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,4879,2158,3423,10243,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,55644,3920,27429,120227,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,1798,6715,6263,256471,551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,4351,5660,5236,538,1371
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,116931,7157,629,4125,729238
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7097,54901,9971,208,3117,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,161247,4695,406938,26762,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2571,5052,65080,3954,8560,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7097,844,885,4846,316,84061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,5078,6616,10991,291,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,3081,64801,4358,858,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,361,5191,3952,6382,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,162417,4128,149461,941,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83854,23590,24147,2303,3073,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2762,2119,7172,517,10524,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,51176,6888,4049,3507,63931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,5176,5581,64116,2335,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10644,376497,5826,104909134,5160,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,116519,63892,2645,148979,83439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,84889,5277,130120,51441,2303
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,330,54806,948,1352,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,57192,4319,4547,1571,407004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 121268,10537,558,79776,152078,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,2266,2303,5465,5365,9575
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 493,5241,55863,51144,4968,5447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,516,824,8473,23543,493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3576,3098,155,6319,51478,486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,10243,796,23530,2835,9451
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,8504,10667,9380,152078,5428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,2542,2169,54578,6341,1471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,2990,3242,51176,4864,57818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338328,391051,538,10643,6319,8504
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,83693,5372,3606,7026,2788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9377,53905,131118,811,3952,23556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5501,64087,54902,9663,10457,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,4729,4720,3250,9868,1443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 37,1347,1376,819,4598,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,51316,2597,5972,4125,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,8660,706,57192,4668,183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3480,11019,4722,4942,57215,8877
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6720,2693,83854,6324,3295,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4314,5365,5925,2791,2932,3991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 374291,3417,3240,6748,2947,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6439,57570,10166,2731,121268,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,94235,9945,2934,2785,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,5584,63899,79087,488,1558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,26191,23530,3034,6519,7422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,60684,2791,132,10965,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7412,4351,8567,3250,5860,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,718,6928,84334,6696,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2729,3425,1149,2641,84902,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11222,79644,821,2689,22868,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,178,5792,585,84706,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1019,4357,644096,2776,5745,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 113235,1906,1514,10062,590,3101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,10352,54210,2305,131669,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,8842,1376,285,51204,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,51738,5579,6647,10616,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,10682,51441,348,8604,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5176,1356,64900,325,6514,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10857,51738,56259,5190,5702,3651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5824,718,2739,7345,2629,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,55005,111,6602,1186,3920
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,84987,9559,28958,293,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,2647,80201,7019,8772,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,9241,60386,1508,406934,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,6868,1409,7319,6774,54901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,55937,211,348,7252,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,203859,7528,9374,3123,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,207,84649,26762,23654,133522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7498,1843,4288,11255,2952,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 405,6374,160287,55858,283459,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2170,1558,10875,2696,493,9415
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,5315,2170,3115,2762,33
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,54575,29926,7084,1499,2932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,133,57620,7048,51079,885
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1910,51092,256471,91452,23410,5789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2487,84340,9868,3557,1234,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,7220,1339,2006,2697,407007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,5239,1859,7390,477,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,1394,795,3627,6571,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,2542,6236,1584,10383,462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10577,25974,34,1340,1890,60528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,6888,23530,5243,56919,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,10383,7076,617,123283,6448
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,51241,4285,7879,4286,407045
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,5625,56052,23304,8842,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132,1355,7252,3159,406938,26088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,858,33,1910,54658,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10195,56302,4684,2712,5571,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27089,8675,4012,5730,2798,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,5594,406947,23474,4803,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9377,6342,84902,8678,91949,3667
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
81.909 2.006 84.581
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.801 | 0.008 | 1.446 | |