Mustafa Erhan Ozer
| Snapshot Date: 2025-02-16 13:40 -0500 (Sun, 16 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-17 11:42 -0500 (Mon, 17 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4720 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4482 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4493 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4446 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-17 05:49:13 -0500 (Mon, 17 Feb 2025) |
| EndedAt: 2025-02-17 05:55:10 -0500 (Mon, 17 Feb 2025) |
| EllapsedTime: 357.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 10753,407007,518,7057,1544,10724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,9445,241,330,115286,5562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85479,9507,63874,655,6354,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123,57001,2166,4729,5507,728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,5176,22820,121268,23409,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,3098,407010,3283,3934,4702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7915,5346,100,189,7018,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,55331,9414,54575,7385,79949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,5581,3425,1601,4720,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,8841,85479,3339,55340,4049
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,1499,407007,3077,665,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,54600,401,6554,8854,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84447,840,9507,57128,2184,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,57818,409,407008,10560,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,6901,166785,55283,177,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,2806,148738,55270,43,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54539,335,26503,27249,1355,7376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1232,2235,8604,3159,7450,728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64432,4040,4853,6340,7076,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3988,9414,55163,4878,292,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5211,3553,1678,55163,9968,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6678,708,1595,7076,79934,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11035,5243,199,6891,79944,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2904,3710,5925,5563,4299,5194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,50484,64801,5365,6387,4552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10842,6492,55572,790955,9131,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,4306,10991,3554,55005,23389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3480,5445,8560,540,54576,4669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56729,7494,54901,156,7287,26227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,4982,3295,27329,516,51206
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4719,3423,2948,27125,91942,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8648,1277,64689,10229,840,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 18,5306,55486,338328,2890,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29843,10165,308,574447,8818,50484
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,5321,5551,10724,1175,7054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,5139,1490,10560,563,2786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,6786,4137,51079,2056,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,3304,29843,445,3157,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116085,55331,1208,406991,37,55750
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160287,2790,7352,22845,1327,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,5053,2053,5315,3383,268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,84649,2475,3250,790955,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,9997,6890,5096,5588,3423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2876,6718,10874,859,7841,10938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,94235,9365,10166,5428,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,3651,4627,116228,4040,10382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,5122,10724,4760,133522,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,3795,1490,5592,6340,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,7040,121268,5230,1537,51021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,2161,6772,1497,149461,4728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2487,4855,2713,5442,64432,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6648,9180,221935,55037,5799,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1544,3692,3308,90865,104909134,10753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5465,401,1149,80224,6515,6248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123283,4855,8675,5091,1992,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,5837,111,2064,10423,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,6565,685,29881,2904,4688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56923,51079,3065,3304,196385,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 367,51300,867,656,1312,1555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7297,596,6716,200186,5563,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,6714,5096,407024,79796,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29843,8803,1728,7320,2517,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3440,56919,347,123,2308,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2696,79944,7879,10599,221458,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,3627,1353,6772,5331,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3308,3643,7035,116228,2720,5329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2310,56997,1345,5468,55186,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 356,1080,8854,7172,6898,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55572,1374,1843,6262,4846,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,5660,388372,6374,406922,776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,79087,84317,6786,51649,23516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54476,123283,4726,9380,10642,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6352,5193,5972,463,183,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,2629,5744,9180,376497,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51601,653509,51204,1348,4049,101180976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,79776,6569,8675,3373,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,5730,7412,5447,5193,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,23395,3329,85446,56052,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6897,2475,1593,11222,64241,79133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,28958,6788,91452,958,3440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,8504,4282,1644,1489,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116519,581,5193,498,7297,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,100303755,2056,1649,10243,2729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 941,51478,25974,367,6402,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,3630,3759,1491,653,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,1734,2052,2646,33,5728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2169,859,19,8854,3958,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4288,3425,29881,7048,8743,1232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,6696,10644,51052,25828,23062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1393,1813,10352,10991,10577,4828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,4015,407006,2878,10457,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169026,728294,2717,10642,886,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,5629,200810,27125,8600,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,6401,790,55630,1356,1789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148979,92935,7325,2348,3978,8431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6390,479,25821,1621,358,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,1022,445,2308,57511,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51608,3489,10577,6261,54205,2731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3990,54982,7386,175,779,341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,5228,5270,3479,200205,54552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,8504,364,5091,9572,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,3034,2878,583,3684,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,54675,23556,4337,3692,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4144,1351,56606,7048,5799,2542
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388962,1270,3658,285,1232,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,169792,57818,54205,23411,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7098,9559,9104,376497,1909,5315
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,120227,476,32,5193,1232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,22933,10229,3645,1393,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8648,5365,56999,10008,1339,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200186,6182,4357,2244,3284,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9095,5175,6566,2184,80201,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,6389,2878,27329,1499,2587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,1646,3356,200205,5507,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5789,9377,5256,2030,1351,2108
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
70.81 2.20 73.14
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.67 | 0.05 | 1.58 | |