Mustafa Erhan Ozer
| Snapshot Date: 2025-01-10 13:40 -0500 (Fri, 10 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-11 11:42 -0500 (Sat, 11 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4760 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4479 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4443 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4398 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4391 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2084/2277 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-11 06:05:09 -0500 (Sat, 11 Jan 2025) |
| EndedAt: 2025-01-11 06:11:04 -0500 (Sat, 11 Jan 2025) |
| EllapsedTime: 355.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 51092,10682,8600,29928,6439,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5728,56652,581,5328,8659,2052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 594,7915,10000,3351,9479,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3122,5971,655,6890,81689,11136
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53632,1369,410,3304,2271,4899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,5080,3783,123263,35,51441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55503,81704,120227,5837,90624,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,3952,5071,1363,7355,177
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,123,9997,2820,53632,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27010,407040,2516,28951,53346,23543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6248,64131,2788,5364,8243,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,8604,5824,1644,9526,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23129,9692,1345,54798,3034,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,4552,125988,3251,2335,5092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,6714,10616,2243,25974,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79949,4023,54902,6445,51024,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,55902,1029,653,3643,642489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 793,2308,330,1645,5580,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4853,105372280,55331,4159,407021,3291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,80224,1200,9607,5723,3156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 121268,27141,316,64116,587,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9365,640,9498,6340,6382,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1869,51119,5167,3293,29078,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1232,5562,5369,23175,79796,407040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 58528,3663,6554,3489,5498,1497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200205,51099,801,131118,629,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,142,8651,407007,407045,7384
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6932,840,64919,1353,199,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5080,3309,518,48,4669,776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8932,8642,4338,952,4684,6649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,6576,4543,3600,10135,6770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,6718,825,5071,5828,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,51176,51548,1589,729230,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,2548,2194,51117,55858,4700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11255,4502,4598,57761,191,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,2155,6554,4547,10013,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4860,3507,1019,5787,2713,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,353500,124976,283459,729230,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,84239,2108,10116,8862,1581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,6392,4855,1992,407045,2063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 30061,129787,90480,4313,3032,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3482,1435,836,1234,2260,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3576,51601,84987,2235,23590,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5243,2702,8722,212,2064,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2194,10013,123283,6522,2745,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338821,10644,7385,51293,3145,3308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7494,54552,55065,63899,23038,85446
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51316,2683,8675,213,4828,118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,4358,3373,27125,959,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,26291,406,2158,1514,10157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,1607,50814,3813,867,1675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1646,51422,2243,506,5499,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,2948,148738,6602,640,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,1443,1356,1401,1869,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,148738,84902,2592,1555,3709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169026,10062,2947,5617,175,5265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,91452,4544,7376,23400,55486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,407008,341,2147,2790,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51144,6515,488,9076,23038,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3418,7421,4654,836,91942,6505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,9479,85569,6716,5228,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5350,2835,2395,640,89874,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9663,64801,432369,1363,5601,1186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,51094,1203,23129,285126,1022
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3565,7840,1956,867,3119,10753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79633,48,563,51458,3795,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,440138,867,205327,23474,23600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 867,5230,3283,10753,2056,84706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729238,51241,55858,6775,1803,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,2847,8431,1608,56652,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3032,435,6339,8842,57104,3416
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5321,540,203,3423,2646,56938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,6898,4311,43,130589,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4715,57761,51128,4976,846,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,3074,217,25813,4718,153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6338,4311,6556,410,387082,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,130589,5193,6714,56302,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5315,5078,54577,1649,3416,3875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6505,840,2516,9630,387,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,64116,126328,5091,4695,9672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27010,1268,6833,63931,79661,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6347,5837,6183,4695,407024,1230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,6833,2581,51649,2677,5370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1244,34,6354,160287,5261,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,2791,406906,275,1716,51204
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,6548,3284,3119,1586,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3115,5499,22820,85476,2581,3651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 37,434,840,4864,6789,9131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,10062,8651,632,2647,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,875,3481,54205,788,8473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 811,5068,463,84340,5276,3489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,124976,5473,2588,169026,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3117,2053,134,2542,729238,27141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,51660,2152,7040,351,3091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,5293,5276,5257,940,2310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,23530,1208,6891,958,6938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,407008,5515,6908,6934,3667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7018,7345,55818,11254,6891,2180
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,9971,1234,4684,4313,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,7319,29968,4942,207,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,80347,51604,338328,53632,27232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1641,6515,2790,22796,6928,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,8841,2548,60528,3685,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,10841,4049,85476,5798,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9388,9559,6515,175,5727,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3899,3938,6347,885,123283,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,7040,55270,388372,3158,83854
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,2788,3559,22978,1490,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5092,5468,57818,5175,2064,55186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,6932,55278,200810,10667,56623
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7274,5122,1351,23530,91949,1340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,5373,10379,2584,54915,406934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,6514,4126,3569,3304,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,3066,9927,5901,7841,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,2731,56729,685,1442,1737
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
77.17 1.95 79.32
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.86 | 0.14 | 1.72 | |