Mustafa Erhan Ozer
| Snapshot Date: 2025-01-24 13:40 -0500 (Fri, 24 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-25 15:37 -0500 (Sat, 25 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4658 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4455 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2091/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-25 03:03:29 -0500 (Sat, 25 Jan 2025) |
| EndedAt: 2025-01-25 03:08:27 -0500 (Sat, 25 Jan 2025) |
| EllapsedTime: 297.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 84987,27235,155,361,9575,3308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653509,10524,84275,3066,2582,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54901,201305,140803,6462,23236,5447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,2113,55532,23274,1678,7098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,656,22796,836,3931,367
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,51458,3991,6554,493753,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,4853,57620,81034,2878,1734
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,84833,161247,1373,4988,10379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,6439,51082,5091,1268,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6374,55644,5824,5345,26003,2539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,2864,4688,6341,629,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,5743,38,11136,203859,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,3507,84557,1582,1558,4286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1807,4899,1071,4285,1798,4779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,8309,81704,1075,80267,2587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,1351,1646,10537,2203,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,6341,131669,1968,3158,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7252,407024,55753,6906,388372,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,84833,811,160287,7037,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3304,3717,4714,5092,1355,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,35,2166,154,6716,539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,4524,4722,3663,249,5195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1606,9997,3562,1581,4716,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7319,4697,65985,6678,4306,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,27329,10845,26521,5579,875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,8842,22901,1869,3077,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6948,51,122961,56259,166785,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2720,2888,5447,100,6648,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84061,5595,1644,4683,9076,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,538,3155,4288,4688,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,51085,462,1537,490,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,9559,3949,406938,8932,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,2159,6261,5713,3115,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6347,5162,9575,367,9779,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,407004,540,161247,27247,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,5315,509,3091,5264,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8813,496,2786,3624,54344,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,374291,51004,3383,2539,56652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4159,4694,7124,51128,9498,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10020,56606,4358,84300,10008,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7030,1339,1601,255308,116085,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,64805,1268,2538,6772,1208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,2788,1890,6338,498,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1672,26521,5270,6354,496,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,64432,5189,1789,5288,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64805,406922,2784,55034,5728,200205
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5330,22820,10667,388743,5562,1072
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5261,51300,64432,2305,37,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6901,2593,2305,4728,116085,10250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,7919,959,5162,148979,1508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2835,7424,211,51478,391051,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,471,3032,79736,283120,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3703,10128,3034,3066,6932,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,509,9054,64689,79144,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,407040,4854,3073,205327,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5571,6929,87178,1559,23395,1909
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,11093,3483,3251,64116,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22978,83854,6716,23304,54896,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6439,56945,6354,292,5265,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83439,2169,2798,27089,51548,2950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 427,4887,5601,2328,4654,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9076,79944,1369,1444,8050,5211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,275,2159,6748,3101,5702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,5581,9572,627,116150,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5901,3569,3938,643181,26175,4889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,10165,6263,2678,22933,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,6262,3562,22868,9095,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,4128,5743,3791,101180976,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,51052,708,4697,3673,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3899,60528,64900,6786,8818,123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10935,2157,3569,7480,498,1859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9131,29880,2919,6927,1675,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,790,55331,6389,7391,10316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,79644,6476,9997,85476,55532
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,57215,7942,51082,5126,285126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4803,1593,54902,2146,801,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6513,9945,384,326625,5727,4159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3952,8942,2244,2638,1588,132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,4695,23410,4288,84275,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57176,5740,3073,9479,5345,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 162417,7390,1281,4846,6387,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,34,5654,3480,50674,116931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2146,5799,6648,51604,10059,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57176,4286,27232,5919,100529063,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8050,10157,57818,551,10423,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,6550,7384,6354,3600,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3667,3087,4705,10857,388585,3570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151,5193,1208,9445,389,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,10243,3081,229,1028,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,1022,1345,3030,5468,5261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,7276,3240,1149,22978,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2638,6934,2834,26119,5727,406937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3948,6522,2108,2539,868,56606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5925,29960,55005,5096,9076,1508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,3440,1071,1497,6391,79585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,2582,5770,644096,11255,100529063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,4543,4723,54902,3382,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203,123263,5445,8841,6515,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8841,148979,4543,2740,9382,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5250,4887,5579,7287,2495,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,51052,8202,55937,5105,231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4288,1634,2055,10667,2348,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,55970,4314,6888,942,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3458,111240474,1435,9091,79572,1201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5781,197131,4143,2495,1606,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,27141,200539,8799,3717,4718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,3565,2495,1588,51082,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,3712,5370,10020,6445,1444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,4688,5239,1588,958,253559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5728,4543,406938,7172,471,2244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,50943,4973,2582,9332,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,23530,57817,6389,1589,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,5962,6462,207,131669,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2030,788,5139,1499,8799,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51316,389,51555,132158,51649,3073
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
63.992 1.023 65.128
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.810 | 0.144 | 3.980 | |