Mustafa Erhan Ozer
| Snapshot Date: 2024-12-23 13:40 -0500 (Mon, 23 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-12-24 11:40 -0500 (Tue, 24 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2081/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2024-12-24 02:44:53 -0500 (Tue, 24 Dec 2024) |
| EndedAt: 2024-12-24 02:49:49 -0500 (Tue, 24 Dec 2024) |
| EllapsedTime: 296.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1843,4879,177,6505,1270,6786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9919,6341,6584,91869,516,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1352,5261,29881,2166,5798,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,3636,23590,5250,51293,4718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 567,8473,80224,2597,7498,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 219,3643,7026,5321,10457,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,57192,7048,50507,7100,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6906,5228,292,84274,1807,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,177,347411,148738,1734,152078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4695,401,493753,201305,28976,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,205327,57017,2934,5467,25839
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,487,84557,2834,2710,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407008,140803,6329,10667,4714,51176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26191,1589,5372,4724,1524,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,5962,51422,116085,8877,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,5270,22978,7026,3552,2161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,1394,6833,6389,64601,29078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51660,6513,2647,200205,5967,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2487,10008,585,487,1591,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,694,6821,6522,23590,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,84649,3458,26235,867,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55278,7040,26517,5243,2944,5191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,4314,1409,4879,231,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4720,10616,23062,3329,64240,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85479,4718,3382,1644,4548,9672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,2702,60386,3813,23395,7389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5255,55486,2305,2702,1558,137682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,84447,341,3630,3638,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,1356,694,15,148738,5660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2760,7252,7942,1757,3383,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,211,5594,56848,401,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 410,6531,2696,57192,84693,1956
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 266,4887,4720,3417,10599,4853
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,558,5161,3358,151306,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2495,10644,4137,6582,1230,84705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3685,6261,54802,6715,4338,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 844,7494,4851,9445,4128,1080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5122,150379,5826,54915,407021,1672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,5277,2030,25839,6515,4942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,3779,29929,5825,80207,60528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,2328,6925,1909,594,10423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3692,3054,10116,2308,941,7030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 506,140803,9131,6387,582,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7097,212,5052,84557,291,197322
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,4313,776,87178,1606,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407021,6888,1717,5241,10226,51293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10667,23175,3060,268,81034,55005
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,1075,1968,8050,8648,5588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,145264,599,551,56729,9692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,2548,4712,5373,84701,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80201,54802,181,27247,2247,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,111240474,5447,3293,6338,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,5631,518,2110,6341,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,23062,80339,6199,4842,653509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,1347,492,26291,91574,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,2948,6716,147007,3651,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,56923,2952,158,115286,9056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 514,79776,7941,5139,558,5211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,84833,7352,7220,2628,5161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2055,4286,2309,3703,1608,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6748,57176,1268,4976,27125,1843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3159,4704,1621,84987,440503,34
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,53346,5499,5625,5713,51128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3251,197322,5329,9091,55902,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 268,629,5190,388962,54809,23062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,4049,51649,694,1968,590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,5727,55065,8854,5228,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3553,3174,388743,151306,22901,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,8803,57505,7391,10383,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2169,5730,587,2790,1734,1444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,23530,3952,1340,4118,5194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 491,1807,1203,2280,255231,191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1393,55005,4694,1606,9021,5967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54809,8678,56923,8862,642489,3978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6464,6339,4760,1889,145264,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5331,3162,51116,3486,55340,116931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,498,1537,4654,55343,4842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23389,2740,3638,4719,33,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,241,275,213,6338,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22797,52,2745,2799,10383,6928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1232,57380,79133,7025,152078,2161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6609,3875,23753,29843,1369,10383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54809,55278,54982,629,5584,7320
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,2115,28958,33,80201,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,51092,55486,4049,22797,1356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4925,4976,5728,858,1200,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387082,241,7297,1813,3339,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26088,6789,10559,3117,4313,5770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,10059,2280,825,1270,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6492,57505,1027,54549,80201,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,56623,345,7879,1497,3382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2890,2947,407024,2998,5787,54798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,27344,821,1588,338821,4299
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3551,10019,132,4855,4288,1582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5068,9630,9021,55967,4524,5962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27141,100529063,9779,7919,2788,5288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54576,8945,5740,133522,4159,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29968,788,6868,4851,3990,6522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3030,5321,7099,7386,650,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4723,54982,1786,152078,5660,488
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,81704,359,706,1910,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,56052,488,4851,2792,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51081,197131,5189,10999,5465,1813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5901,54806,486,10642,79087,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,201305,91949,9370,63892,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,3074,3099,4299,8841,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,5538,111,6901,79783,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25813,81034,587,1543,122961,341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,4543,10577,1890,22933,9572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,4358,51441,492,185,133396
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,1815,8841,4967,3417,100130015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2934,407004,2947,255308,3375,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 642489,54968,8504,384,6647,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4285,5306,643181,3553,8050,493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,3667,10616,256471,51117,410
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
65.520 1.629 67.295
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.730 | 0.054 | 3.809 | |