Mustafa Erhan Ozer
| Snapshot Date: 2025-01-31 13:40 -0500 (Fri, 31 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-01 11:45 -0500 (Sat, 01 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4704 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4467 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4478 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4431 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2094/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-31 21:42:49 -0500 (Fri, 31 Jan 2025) |
| EndedAt: 2025-01-31 21:44:47 -0500 (Fri, 31 Jan 2025) |
| EllapsedTime: 118.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 11136,22901,1186,7494,440138,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 656,1346,3558,2030,10295,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111240474,4552,6183,1757,1356,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,81033,5257,2760,6505,51119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,285126,3358,64131,8932,79068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,2673,10938,23530,4233,728294
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,929,517,64900,9759,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,52,7276,7078,7124,54549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23516,2645,7412,1490,9572,8659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55858,10135,1185,1718,338,169792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10730,1347,55630,65985,8879,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,2584,6492,1893,54331,10094
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,92483,11093,338821,8877,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,5236,3899,32,57818,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5631,410,112817,1509,5373,56623
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,50814,64919,5770,23369,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,3692,80339,3117,8604,7287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,4012,3329,4598,123,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10157,29929,594,89874,1175,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,9095,283120,84947,79001,5442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,2641,3630,3034,1584,7841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55283,11093,54931,151306,5122,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,3759,10295,2334,54578,57380
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8309,729230,31,8195,1718,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,201305,1471,200186,7292,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,2946,8600,201305,205327,55340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3162,54931,2157,10643,3651,219
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,4702,53346,406938,4716,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4288,6354,5728,10616,55788,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 249,11131,388743,219,4256,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5315,10352,9370,406947,6439,4552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55343,4925,5096,5236,5476,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1327,5409,3767,79068,60,56652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 487,3709,5078,5970,6609,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 185,4153,344,6897,5009,92609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,9131,5967,1717,5798,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,3643,6329,3899,5091,55526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197322,338821,1601,158,7097,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,79949,3624,64241,7057,5594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,7040,4715,57107,347,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,11019,7099,56052,1646,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,336,8050,3417,125170,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,6464,1346,4694,2834,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,79661,5445,29926,203,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84557,3162,124976,1409,2947,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3489,4899,64131,178,3373,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,4860,129787,116085,210,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,169792,133,7100,339,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,407008,84902,51176,51128,708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,9370,471,558,4547,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,10667,10166,3586,5563,6445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,52,8722,407007,57380,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,1716,7372,6338,4023,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79144,338328,3099,3651,7480,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,4548,1208,28957,51119,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26060,9420,92667,6390,84275,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10559,642489,3938,5069,2475,958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,5241,10008,84061,790,8879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6999,10580,25813,8309,5139,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,23395,3162,5091,197131,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,33,5068,9971,54675,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5860,1277,350,5167,56052,51
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,84061,54896,54210,129787,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,10644,1786,2984,1968,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,4758,51144,479,3643,563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,55768,4723,788,6402,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,1586,54809,4627,1859,4688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,518,2110,5805,51241,9429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,3630,256471,6390,200539,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,2890,57505,5798,9056,3170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63931,2793,3304,9512,10295,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,6351,100131801,10965,4886,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79001,10000,347,55818,6505,10382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28951,6868,685,7040,3663,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80339,3251,57017,33,8772,7026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,8945,8309,83985,84889,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5091,9374,8877,4842,7325,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,55331,1588,5901,3934,94235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1373,55037,23291,7385,2947,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85446,5499,5468,2155,25813,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,148979,4023,84706,79796,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9560,2944,5350,6714,3423,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3482,5365,51422,2584,537,3813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,583,5192,5745,2641,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201595,1605,6579,10020,8841,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,33,6342,355,114814,51204
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64131,1649,410,2591,25828,4846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80222,2200,2760,3663,1355,4012
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4879,517,26191,10999,2587,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,84706,5052,116519,268,3290
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3122,84902,3952,22978,57570,9095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,3034,6772,51422,2908,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 119559,4357,5506,79144,80347,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,10524,4319,6566,100130015,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,7450,9672,2792,1371,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9429,5160,407011,58528,1543,10379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5069,3358,8879,653,29947,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,2762,3417,885,359,56938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2729,486,821,80207,4967,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56923,842,406922,1175,3251,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,3663,5306,388585,8567,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2875,2063,26119,3565,7942,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,229,2516,123,4128,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,1270,493753,1230,84447,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 886,7284,374291,125988,5745,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,7295,10020,120227,407006,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7038,124976,53905,51422,6721,150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,1175,435,330,344905,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2310,19,1175,55699,3141,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,55753,100128525,2542,131118,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,199,2280,8462,25828,4973
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,6770,83548,6821,4358,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11093,2309,203859,819,6352,2591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10243,10094,10229,4285,3991,9969
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1351,572,10580,353500,10062,2247
--> return NULL...
2025-01-31 21:44:44.694 R[77953:427792197] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
30.428 0.411 30.908
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.269 | 0.013 | 2.956 | |