Mustafa Erhan Ozer
| Snapshot Date: 2025-01-23 13:40 -0500 (Thu, 23 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-24 11:42 -0500 (Fri, 24 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4609 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4393 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3839 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 3835 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2091/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-01-23 20:38:46 -0500 (Thu, 23 Jan 2025) |
| EndedAt: 2025-01-23 20:44:03 -0500 (Thu, 23 Jan 2025) |
| EllapsedTime: 316.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 7389,7099,154,85476,5468,5473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 858,389692,3030,10875,1537,406906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4843,549,4695,10874,6352,5588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,10000,6439,8604,4089,8202
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,5629,11093,4780,5468,3576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5080,3290,34,9945,8648,3073
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,23590,156,776,7498,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,5723,1371,51092,27429,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,4144,7040,407024,7350,3375
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,115286,339,2713,409,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,537,123,56652,2947,43
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5617,6928,3767,7097,1815,3784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,22852,116931,5276,1555,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,2787,23304,51548,10221,7352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6775,2746,29960,5824,3158,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6439,7172,9969,64240,1442,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,8639,8050,79944,4889,203068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,11222,2582,55753,7038,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6696,148979,3978,1629,54658,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255231,2864,26291,23054,2161,2740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,686,85365,130589,28951,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,57107,116150,5590,2100,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,197131,3158,60528,2146,549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123283,84693,207,51085,6445,51128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5211,1728,929,9241,4552,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9415,6515,83548,2791,85569,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5901,26227,790955,7037,7124,79934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4843,64805,572,6439,4860,9380
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,64689,5507,10102,3931,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,3117,5805,407011,8659,2952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4968,650,3101,166785,25915,9104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,3954,92667,27089,80270,10250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54658,858,213,359,211,3489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148738,10857,3309,4694,6374,3569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5293,3295,1230,1644,6928,627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,1555,1186,1557,2689,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,55340,51103,57128,29960,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,55037,54806,2584,364,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27089,2944,6338,4314,3065,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,123099,5595,131669,55699,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 118,1329,491,83439,28958,84649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,29929,81570,55970,4357,85365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,6576,1056,8772,9380,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2244,8604,48,2184,2055,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,7076,6720,7320,6403,5350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,7036,1738,3929,84706,11136
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2729,8813,9380,407040,4855,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,4247,255738,6774,3931,10128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1557,7319,4288,4049,9927,170302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,1890,316,3991,104909134,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7037,63899,9091,2629,788,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,2712,3158,4313,63899,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4860,3373,6565,4502,7077,9380
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8651,80270,642489,6868,27249,2947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5288,3759,5476,4683,4700,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6938,3554,56652,291,54915,26521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,3416,3507,10316,1571,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1443,38,5192,7030,9365,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,2235,1514,57678,409,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55278,25974,383,10226,23400,3980
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,7167,1348,8604,32,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,2113,728,3949,284184,3673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,7048,84987,7084,7025,6770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,5901,517,4299,1281,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1352,4159,4286,169792,51608,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2006,4311,2788,8854,4695,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54344,3250,2155,8841,6505,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,6929,5122,3240,92609,60684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 518,2745,3569,152926,25813,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26291,87178,779,2932,1737,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,9365,4854,6522,2006,2118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,23038,79934,5211,51660,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3141,5327,51608,133396,84342,9672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,55503,2348,1738,23410,5919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,29929,4790,1889,55024,3284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56945,208,6579,54902,5468,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,6402,27235,8560,54549,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,4705,3600,2787,10537,9056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,3948,185,1019,6748,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,2653,2101,81034,10724,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,51092,2712,3240,9498,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,7498,2166,5770,7388,1071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,54704,5970,1080,6811,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55644,153,56945,33,941,4878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,1340,3700,11131,5590,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,5250,549,4524,54704,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 640,7840,200810,9607,10842,1393
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,6582,10599,4159,6770,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2632,22933,7391,23654,9370,8665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6402,55065,26762,5599,1769,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,55970,111240474,4942,5445,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7297,1524,374291,6329,2030,2591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 340024,160287,26119,8660,411,583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,6948,30061,5625,3054,10667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,51144,8567,292,203,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,29960,2597,2155,4852,347411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85446,1374,5261,9630,7466,3113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,23291,9414,55630,325,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80201,3117,57818,85446,9919,793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,64432,406922,1559,5727,51082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116228,6794,4023,2936,3948,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7345,5367,5053,11255,5277,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,7421,123099,84947,107075310,3073
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,388743,3600,728294,3643,1027
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,35,2804,6339,351,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2678,84705,7078,4023,476,2548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8202,3553,3875,407024,51167,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3663,2731,27235,4803,63874,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,50506,5837,5213,255231,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2646,1678,3596,1636,51241,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,5122,51738,10159,5126,8678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,30061,3034,100303755,25974,57107
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353500,8471,54809,80267,54968,8803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,4654,4286,7098,4988,3992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 590,22933,2119,3157,9104,1200
--> return NULL...
2025-01-23 20:43:54.191 R[22908:985260980] XType: com.apple.fonts is not accessible.
2025-01-23 20:43:54.191 R[22908:985260980] XType: XTFontStaticRegistry is enabled.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
63.126 1.341 65.002
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.728 | 0.039 | 1.068 | |