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This page was generated on 2025-01-11 11:46 -0500 (Sat, 11 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4760
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4479
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4443
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4398
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" 4391
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 58/2277HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AlpsNMR 4.9.0  (landing page)
Sergio Oller Moreno
Snapshot Date: 2025-01-10 13:40 -0500 (Fri, 10 Jan 2025)
git_url: https://git.bioconductor.org/packages/AlpsNMR
git_branch: devel
git_last_commit: f8b70f5
git_last_commit_date: 2024-10-29 10:53:23 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for AlpsNMR on kunpeng2

To the developers/maintainers of the AlpsNMR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlpsNMR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: AlpsNMR
Version: 4.9.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlpsNMR
StartedAt: 2025-01-10 20:51:15 -0000 (Fri, 10 Jan 2025)
EndedAt: 2025-01-10 20:53:36 -0000 (Fri, 10 Jan 2025)
EllapsedTime: 141.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data AlpsNMR
###
##############################################################################
##############################################################################


* checking for file ‘AlpsNMR/DESCRIPTION’ ... OK
* preparing ‘AlpsNMR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Vig01-introduction-to-alpsnmr.Rmd’ using rmarkdown
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig01-introduction-to-alpsnmr.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpPZzI2H/Rbuild210361ad02f50/AlpsNMR/vignettes/Vig01-introduction-to-alpsnmr.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig01-introduction-to-alpsnmr.log for more info.
--- failed re-building ‘Vig01-introduction-to-alpsnmr.Rmd’

--- re-building ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’ using rmarkdown
Warning: program compiled against libxml 212 using older 211
Warning: program compiled against libxml 212 using older 211
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig01b-introduction-to-alpsnmr-old-api.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpPZzI2H/Rbuild210361ad02f50/AlpsNMR/vignettes/Vig01b-introduction-to-alpsnmr-old-api.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig01b-introduction-to-alpsnmr-old-api.log for more info.
--- failed re-building ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’

--- re-building ‘Vig02-handling-metadata-and-annotations.Rmd’ using rmarkdown
Warning in system2(..., stdout = if (use_file_stdout()) f1 else FALSE, stderr = f2) :
  error in running command
! sh: line 1: lualatex: command not found

Error: processing vignette 'Vig02-handling-metadata-and-annotations.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/RtmpPZzI2H/Rbuild210361ad02f50/AlpsNMR/vignettes/Vig02-handling-metadata-and-annotations.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Vig02-handling-metadata-and-annotations.log for more info.
--- failed re-building ‘Vig02-handling-metadata-and-annotations.Rmd’

SUMMARY: processing the following files failed:
  ‘Vig01-introduction-to-alpsnmr.Rmd’
  ‘Vig01b-introduction-to-alpsnmr-old-api.Rmd’
  ‘Vig02-handling-metadata-and-annotations.Rmd’

Error: Vignette re-building failed.
Execution halted