Mustafa Erhan Ozer
| Snapshot Date: 2025-01-27 13:00 -0500 (Mon, 27 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-30 12:12 -0500 (Thu, 30 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4494 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4400 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-01-28 11:46:21 -0000 (Tue, 28 Jan 2025) |
| EndedAt: 2025-01-28 11:52:09 -0000 (Tue, 28 Jan 2025) |
| EllapsedTime: 347.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6339,4719,32,2110,768239,79934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,3920,1186,55818,4338,1629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,3159,5442,9377,1582,5428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284184,79602,285,9479,5723,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6505,6522,3033,79934,6649,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7275,7038,479,3081,1185,54576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,6514,79001,9095,107075310,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,166785,5506,1906,4118,6519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7389,2804,84705,1329,2694,1644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,5468,3703,56302,388585,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2645,7026,114548,54915,1806,3101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6648,2170,1629,1351,5824,5799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,2998,7248,133396,1436,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 718,201305,112817,2235,9370,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1645,1282,2948,6182,8462,5071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,2030,6890,5713,2992,2788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2475,1717,57215,824,9692,374291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,2203,2328,64919,6720,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728294,6248,80331,51608,265,64116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51,1376,885,2591,4502,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,10524,6339,114548,1409,6556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,3483,10221,5329,3458,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,92483,1244,55532,3065,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,79087,1444,6928,2159,10857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51099,2998,3480,123,5214,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2950,4702,344,2108,1072,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,1582,54809,2101,79602,10128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80267,407009,2693,344905,3483,18
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7054,3779,4035,51300,2170,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57761,6906,1185,7319,26762,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,57048,790,5288,9409,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5193,28957,2592,6514,8743,632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,83985,729238,203068,885,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 516,2056,4720,200205,51144,2746
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1493,1524,3875,2243,10269,886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,2647,158,7919,200810,26517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,57761,728294,26175,6579,3119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,3423,2006,6888,8678,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,4285,175,1634,55970,29843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55343,2155,5409,8471,6492,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,5805,123,5740,186,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2587,10383,686,2115,9572,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,5581,275,2677,3174,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,5828,5824,51608,4925,539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,7424,5617,6811,130120,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57104,6354,3551,285,4247,19
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,55340,111240474,583,2158,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2006,1401,685,4126,1992,79776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,9104,2559,27329,56922,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,2639,51116,197322,10382,583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,1435,27010,2937,4669,6198
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,55037,57001,2310,1757,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,7172,6476,5781,80207,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,2334,32,3717,574447,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79776,1351,55005,7275,2793,9698
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,57380,3357,50943,285126,22868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,151,4143,3309,1605,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,10128,4779,8841,79068,43
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790,5825,9021,1356,29968,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4035,7376,3875,596,4780,567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,7515,1244,4627,23236,5594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344,2571,486,8879,221935,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5621,5080,407040,5214,4879,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,6609,1543,10383,92935,4704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 537,3663,26521,7409,291,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,3156,2875,19,1022,253943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,51021,2587,2720,56606,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,211,351,148979,4338,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80201,19,285848,5009,2688,406938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,138050,2944,338,63874,5288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1544,4982,2673,79087,55902,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,23163,1345,6522,10842,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6648,316,5618,7916,493,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7295,84705,2115,11136,2170,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8879,79053,64432,3992,572,1443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3783,51601,5175,1807,9560,56606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,203859,435,490,57001,353500
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,2539,6198,7054,4313,26521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8694,1893,85476,5078,3703,5194
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,3931,2639,2475,211,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2944,5193,10642,3081,4552,55486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,4700,3030,51601,405,51478
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10316,92483,10295,5068,358,407040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,1345,51300,265,6517,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6342,1757,126328,10102,1558,177
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,1200,2784,3600,51176,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 266,788,1186,79949,795,120227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3312,2591,91942,10560,79053,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,221935,563,4726,410,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,57570,4723,3795,1559,5728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 181,8600,4780,6009,5188,54704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,7919,9498,25821,79776,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3375,132,793,347411,7388,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,5350,10135,131118,81034,5592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7097,6772,83985,64116,7431,145264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,1491,10383,1329,3375,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338,388372,29926,8743,3304,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,10062,3382,3485,594,137994
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,4842,5601,23516,6342,197
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,54915,5265,23417,3065,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,34,57678,54902,6890,941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,2516,4232,627,56652,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,538,5265,84947,768239,9526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54476,8772,10159,3945,388585,6531
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,316,796,790955,7078,2952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,79796,7025,3082,79087,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,2170,1493,4306,1606,5594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,4548,5176,3489,2890,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,1910,338,55644,5967,868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56848,56922,3339,3312,9663,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83548,9663,10102,4656,5498,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,22796,55572,91869,5515,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2919,3054,5592,5563,25974,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,191,114814,7480,129787,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,406906,4942,5654,406937,10935
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
75.324 2.690 78.313
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.771 | 0.012 | 1.304 | |