Mustafa Erhan Ozer
| Snapshot Date: 2024-12-30 13:00 -0500 (Mon, 30 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-02 12:06 -0500 (Thu, 02 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-12-31 11:52:30 -0500 (Tue, 31 Dec 2024) |
| EndedAt: 2024-12-31 12:02:16 -0500 (Tue, 31 Dec 2024) |
| EllapsedTime: 585.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 79001,5741,353,54210,4942,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338328,34,60528,79602,26175,23543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4714,7018,10157,885,7915,29078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,1815,80339,2639,6536,488
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,9388,3329,7351,239,5162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,57818,9365,79585,3458,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5617,9409,183,23409,53335,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3958,405,9377,8462,824,25915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,50484,3663,1968,1369,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,5071,64241,617,5364,1508
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1869,406938,1352,353,5194,7100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7471,574447,8195,170302,93587,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,3728,10643,540,84275,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5188,1789,79633,476,25915,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6898,1675,1606,5730,6262,2052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5239,9365,55486,6402,1327,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,476,1786,335,137994,10157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,2166,3929,3596,353,100130015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,5805,51241,57570,9388,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,9409,8854,6403,9374,406947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,28234,5350,27429,5594,131118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,211,6786,7026,4697,2696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,3440,5188,132001,5644,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,4282,285848,1348,25974,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,4285,3667,26191,6198,582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,5261,5096,10466,23175,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1071,6198,563,5069,81570,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2244,100506742,5367,79644,3759,5257
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,116085,5588,22901,91869,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,1718,409,217,840,10243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4247,6927,514,51117,1716,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,627,1591,10094,1798,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,80222,55283,11213,3295,7498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7916,4982,9104,155,134,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,4683,1468,2639,56259,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,3507,53632,5096,8431,1471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7350,11093,3670,9104,19,7915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10,27141,55644,186,253559,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 15,1593,50506,57505,5162,9021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,5601,7389,2115,5629,1355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8600,5428,6521,4719,3240,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1718,1956,10000,196385,347411,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,4000,5139,54931,10062,1351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55037,2034,3949,55331,7100,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,2694,5901,150379,4683,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,9131,2792,539,48,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,1813,5621,338,594,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,6582,55024,26762,2348,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,134,875,3156,2950,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,959,407004,1348,5139,23590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3423,23369,211,3081,6821,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,6715,6775,175,795,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,50814,10243,5594,2695,18
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 292,9997,51649,4729,7391,3066
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,54210,28958,1803,2712,3586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,116519,186,10,1175,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5053,5445,55526,10616,57761,4502
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4159,6774,100506742,9091,56652,1815
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,1672,5167,9415,8675,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2647,55858,2309,2539,5328,4780
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,7036,6347,3638,5091,53632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4125,4779,5468,7295,23417,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1650,90865,3423,7077,4714,6584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6868,8879,29843,4160,50507,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51601,116150,665,120227,2591,1555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,1203,10352,10135,821,4704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7386,54600,5080,3119,5092,4288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,10524,57048,653509,7284,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9969,3098,4688,5256,3995,161247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,2878,2890,4153,2593,7097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,285362,4598,23163,1340,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9971,79602,1347,1490,2099,1581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,3119,105372280,471,197322,2155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,9388,6649,51117,91647,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6531,54575,2108,6387,133522,149775
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 594,4247,2904,1444,124454,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54210,1056,3700,8841,11222,5288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7528,51241,389692,5329,5274,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,5631,1489,80267,825,643181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4544,2949,50943,3291,54575,5592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,57620,406934,10008,134,6788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54600,55902,5644,5789,3551,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,200810,5584,197131,4704,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 119559,10577,84239,3710,6901,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169026,291,91647,10643,55065,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1524,23395,2805,3958,5330,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,8722,383,2693,2778,148979
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4288,2495,5660,7132,3728,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,9056,506,57761,55970,5161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388962,51176,5644,7355,4852,6514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10382,5830,4247,1910,361,2638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,7919,22820,3077,9388,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2100,406982,2778,54798,10,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,590,6908,37,2271,1201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81704,84274,3351,1442,3931,2643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,7276,3242,27232,64432,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,3554,653,148979,23462,5584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,2166,2690,132158,5588,54210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100131801,51181,3929,79934,2778,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,29843,5019,5781,6609,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 212,51052,160428,1678,200205,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,5745,6401,5328,340024,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,5447,2517,2247,83548,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,84572,92483,857,1644,6324
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8743,54902,2678,92483,9572,7100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,54704,10667,5321,2101,162417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,3122,10157,57085,3728,119559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,4694,844,4852,1312,3992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 708,376497,3416,6236,5925,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,2835,6341,10537,5053,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,537,7292,3098,819,796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,255308,4594,3155,18,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1443,7471,85569,1080,51144,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5096,644974,6898,7035,7297,5584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,217,84987,387787,63874,26088
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
106.487 2.080 110.642
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.369 | 0.076 | 1.814 | |