Mustafa Erhan Ozer
| Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-10 12:10 -0400 (Mon, 10 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-07 10:49:35 -0500 (Fri, 07 Mar 2025) |
| EndedAt: 2025-03-07 11:05:29 -0500 (Fri, 07 Mar 2025) |
| EllapsedTime: 953.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5372,2896,51004,6565,19,79633
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,6548,5161,326625,54577,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1509,3141,55967,6868,1893,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2835,367,25821,6402,2310,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,5095,4137,128486,10724,51094
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,196385,3417,4864,130120,2628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1717,1394,11136,2593,1471,4879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10845,518,25828,3954,6356,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50943,51103,2034,5265,11231,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,91942,253559,2581,2053,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2200,203068,493753,2581,7428,540
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54704,1583,8050,255231,6565,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1270,231,407010,1544,2690,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2731,6389,54576,151,4683,7284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,6517,23543,1203,7167,1594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,56623,54802,84334,5122,4982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,8802,1268,55037,140803,6382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,3293,10,60528,114548,151306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,51024,643181,4314,7220,145264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7345,790,1499,685,79572,10841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2100,406906,7036,4285,3172,6464
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3159,587,6324,4233,2348,4744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6352,4609,5563,2984,3054,55163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,10059,8567,3685,3980,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,7036,718,283120,2647,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 885,26762,5428,51021,3767,374291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79644,64805,9663,9056,116150,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51206,56923,25915,28976,1558,201305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3569,54577,1968,10991,2695,3242
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6514,2030,55037,27429,776,9131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,5730,3172,81689,1893,142
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,81704,9759,1605,7054,585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 210,7498,11096,116085,406,2878
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,1281,10226,3082,1277,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3791,506,6492,5971,5406,10226
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51601,4594,91452,5970,3557,55768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,330,8877,2950,4705,2804
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,8722,8803,3479,7347,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1557,2587,5792,2247,7077,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,2639,5291,383,1605,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3630,5409,2158,824,84706,2834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80331,2834,100131801,7124,5373,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,148738,2792,29928,79731,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7409,476,124976,5009,1443,51119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1786,56302,6324,9451,54575,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,316,123263,10,2847,5728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4704,57817,3115,539,793,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2244,5830,875,186,2158,6891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728,5798,56938,840,11093,359
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,7037,3082,57085,9759,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5373,3162,7412,5369,3240,6248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 34,407008,10841,2683,6602,133396
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,149775,6748,653509,3929,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,7048,434,3483,6476,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7077,2776,51738,84061,1436,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84833,2184,7252,4314,3779,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,4137,51024,8050,6261,406937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,3032,948,3931,239,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 788,57380,6374,941,9479,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,2790,26060,999,5288,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5293,1268,186,255738,2244,84889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10642,7320,91869,4942,213,121268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,10999,1281,1442,3073,6565
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,9380,27429,4720,18,570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,1347,2064,55486,91574,79644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2334,10379,476,7916,3624,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 587,5243,131669,10128,1356,5507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79133,811,10580,3875,1489,4758
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,6811,10423,55065,2638,2244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,2729,406937,7248,1786,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,92609,54567,9945,3995,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790955,4149,8665,4669,4318,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,8195,1373,7019,1369,358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,5328,3929,4694,100128525,3934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2524,686,7351,7424,7841,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,79644,1071,4915,3101,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,7915,9759,91869,29078,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11035,5373,4828,2697,10724,138050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,582,10195,6536,26762,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 793,57107,4035,3291,6519,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57511,3553,5331,100128525,55005,231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7036,5068,6324,89874,6566,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6262,84693,2729,1373,2647,100131801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,2581,3728,3062,229,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5255,2890,7840,388962,10667,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,57511,1027,10166,29880,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,3309,219,1537,4313,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23411,5824,9054,6448,7942,1230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153,54809,6402,84705,5096,10965
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 158,3375,4879,790955,3458,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,22868,10166,50484,7390,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55644,4282,1509,6515,2348,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389692,2952,3570,5825,7494,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,79133,496,51458,57107,54902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,3685,6319,9560,4851,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,23062,64805,10644,23409,10753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6261,1734,56945,2517,7036,6929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,3920,83854,54802,2243,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,249,6198,11136,3795,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,32,10560,1589,6906,5009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6392,5175,23409,213,114814,145264
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6513,4968,22933,55630,9388,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10316,91942,3309,3920,7124,4718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,7248,138050,5126,23236,23369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,2593,4718,6696,3242,388372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151,137682,5730,1646,3784,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,19,51085,407009,3425,5919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,54806,4851,3703,1718,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3651,5601,148738,3145,9968,25813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27010,5329,479,2790,293,407040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,706,6906,1571,28958,1738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3783,1910,125170,84274,3119,6261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1493,3875,5191,53345,100130015,642489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,11093,5350,407007,79633,1544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 596,5277,137682,486,3948,83439
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
473.159 3.309 485.202
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.409 | 0.077 | 1.986 | |