Mustafa Erhan Ozer
| Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-10 12:11 -0400 (Mon, 10 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4670 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4355 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4446 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4439 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4306 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-08 11:32:39 -0500 (Sat, 08 Mar 2025) |
| EndedAt: 2025-03-08 11:38:09 -0500 (Sat, 08 Mar 2025) |
| EllapsedTime: 330.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 7040,1489,11095,6775,186,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 491,1859,26191,197131,367,656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,9698,3569,5919,55186,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,57048,55630,114814,7498,80347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,350,1471,79731,57817,4899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2109,653,22868,1728,11222,5052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9056,54576,6183,255738,5447,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3939,6390,5499,10159,5728,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5727,51021,54344,9969,581,2559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56606,6519,55005,89866,63892,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1468,3813,2787,5286,2647,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,2109,6248,6748,3489,2475
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26291,56606,9663,6521,7274,104909134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,653509,8639,7297,26503,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,5741,5188,92935,28958,2516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133396,6505,191,54896,55863,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4543,2697,9332,1490,27429,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55163,6579,496,859,6556,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3030,239,84334,25828,7372,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9332,776,131118,3954,10226,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,2948,6906,91869,10457,84572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,406947,7428,4313,9445,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91949,3030,79144,8802,6564,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,4714,1591,567,6550,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,3119,6261,5599,26191,7388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,85365,1268,7351,8862,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11231,5467,55163,1629,7376,2559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2876,55788,4899,1581,2904,285362
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,1992,1371,51181,846,1373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10019,23411,9692,23369,6929,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23753,27247,3066,94235,6927,100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,57570,2034,3308,6948,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,5702,5261,79587,594,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27235,10229,795,4714,2629,5214
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4722,558,5792,3425,1508,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,104909134,23753,847,183,27344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,23409,100303755,7248,9420,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,2760,491,4744,407007,51082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51117,1608,1621,5468,3490,2593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2638,2266,56259,2677,4715,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,79949,57678,5236,154,537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6009,84705,124976,2646,9575,7052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,3945,2099,10524,54806,3251
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5330,51099,3065,842,3920,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,55331,4697,7916,5286,7915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29843,1027,10466,51601,3458,92609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 24147,10094,6382,6566,2791,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27249,5369,6648,56938,6515,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,643181,875,7057,1175,407045
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1270,84317,6901,3784,5241,644974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,55902,8202,706,10059,5515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,2303,350,57761,6565,4126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7275,7035,4012,708,211,4709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,5161,123283,338821,4889,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8462,84833,79087,137994,3931,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5256,3779,51082,3283,11132,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,2946,3081,3596,23369,1376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,3930,4669,79644,341,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,3651,50814,4285,2784,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7385,1636,6390,3931,4843,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1337,64131,1559,84649,336,7450
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2653,128486,51,9131,1537,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,94235,2591,316,5193,4712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5501,7172,5962,3054,7424,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,8567,23395,1490,2949,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51052,929,79133,56997,54798,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,406991,2118,6324,3953,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,885,1443,79949,51738,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2146,6811,4285,23530,549,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,1968,26762,6932,55644,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6565,3586,5551,3074,2688,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2776,51,5901,5745,10667,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51458,10116,122961,316,2688,3293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 549,2834,388743,27089,124976,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,4758,2790,126328,7325,22933
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6352,5261,9919,5805,570,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,1649,1149,5328,1348,156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6554,4843,3423,90480,728294,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,6513,130589,7097,492,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51079,2110,7057,4627,3156,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,2109,1175,2303,345,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6392,1348,51204,8694,54896,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,80201,6392,463,23291,9095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,9131,347,4719,5805,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,79736,9374,26517,27249,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,3486,2169,4654,5830,2328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7528,10295,1956,4889,23543,6536
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,4089,3356,729238,8473,7078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6342,2776,706,796,84275,3759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,411,353500,6383,406922,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,7915,1593,2118,1605,5315
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,3899,5498,7252,10724,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1175,1992,10938,1815,6602,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,885,5372,125170,7057,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,2712,929,2792,825,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,729238,9560,28957,5467,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54915,6521,3156,5315,3712,6402
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2524,4724,266,5741,27232,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,10013,5799,5798,7840,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51608,4968,686,131118,54902,650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407045,54798,123099,940,53905,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,801,3308,191,1443,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131669,6890,5315,654,26088,345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1234,3458,10935,1585,217,2495
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,9969,3482,6906,3875,493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,3958,29843,1589,4723,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1080,471,4153,54331,1906,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1559,4695,5770,10243,516,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,940,3155,1028,8600,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285362,886,43,844,3673,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5581,4828,79144,3507,8722,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5825,6648,5629,10269,8604,57017
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56938,7407,57678,55486,6236,2235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2200,4125,405,353500,4311,23129
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,205327,5919,664,50484,8504
--> return NULL...
2025-03-08 11:37:59.342 R[12458:277618641] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
71.849 1.165 73.203
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.974 | 0.049 | 1.653 | |