Mustafa Erhan Ozer
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:31 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-04-01 06:35:19 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 06:41:09 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 349.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28 ucrt) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 388962,3645,7172,9054,6550,10221
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 391051,5970,7450,4855,10875,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55163,596,4594,64131,5189,3155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6464,6929,4143,4502,9630,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104,326625,210,6811,6925,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64805,1544,26003,52,210,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4723,5095,1716,148738,3651,26175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9131,7407,387082,8678,537,284184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,6696,18,2056,867,3948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3250,1893,4159,1201,2056,140803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,1182,26521,2643,123283,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,1893,10229,2944,3712,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,2169,57620,57511,51082,652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,58528,10466,8567,79949,91942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,10875,3425,2647,56999,285126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,1737,5467,51548,3658,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,85479,10243,205327,440138,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,5781,142,1353,5105,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10316,50943,463,8665,7248,488
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,10423,51094,2847,6788,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,10221,5345,1234,2161,376497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80331,28234,5744,594,10195,516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,10642,28234,4313,54539,84274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,55644,2908,5962,1812,6833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,84062,29926,221458,6261,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,23600,22933,401,6906,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1356,53632,5330,3991,10559,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,23409,551,9997,53346,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,105372280,374291,617,7879,6009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27249,10938,4878,7347,6262,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2693,26235,113235,116931,100130015,27249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2180,15,10379,51176,80222,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5702,8813,23054,493753,55331,10560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5161,316,22852,2310,434,7284
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,3717,8675,5092,55526,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80331,7057,3627,84693,1356,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,54578,79001,6678,655,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,5654,718,2305,7038,55750
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79158,2516,3309,509,952,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,9560,6341,3066,477,5617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8639,1992,6347,7345,6382,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26503,5236,642489,498,54205,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54577,3159,51081,9429,2739,26119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1813,51092,6356,2820,1956,79796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2056,1801,1557,2118,1806,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5091,5825,55630,7528,132,387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,256471,64131,56945,407008,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,1789,5728,5095,6263,1605
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2517,10667,4319,5836,107075310,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,1373,5257,4318,55753,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,6517,768239,4967,6901,3930
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9332,2584,9968,1373,8932,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 32,2034,2571,842,26354,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1363,4544,4915,25813,123283,2731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1601,2305,875,8675,3728,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,3081,790955,92483,3559,65993
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,23753,3929,55532,6009,2099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4594,9056,10753,7355,2063,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 409,407009,941,1910,79133,18
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,1524,27329,3383,11132,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,1376,79572,27141,498,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5092,1524,3091,185,6392,80070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,4627,5588,55818,7385,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,2694,5581,81033,8648,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4524,2100,4338,11136,2784,10999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5601,132,83985,285126,23400,53632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8648,9498,5860,4723,2629,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,56848,57048,3373,4843,133396
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,509,10020,104,3081,1649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,6182,10382,1409,6929,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,1340,652,100128525,1497,191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,151306,23516,2695,7351,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4925,7450,844,1203,8202,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1585,27344,3062,2799,3483,2158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,10062,811,2119,55270,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2678,4286,55283,5781,51738,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221458,23417,2571,27249,6609,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5369,5092,10643,112817,388585,1392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1080,81570,23462,1718,1281,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2115,1956,293,7018,572,5723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,113235,6833,29881,5239,57017
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 94235,51738,5826,1591,5052,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,124454,3717,57678,729238,7026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,506,123283,4889,85476,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,56923,5744,7037,6401,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,8799,23409,2713,64087,266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,54896,5406,6584,5741,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23410,4143,54600,2147,23175,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9021,4548,55750,1803,407009,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7295,4688,10599,7390,5971,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11231,656,3141,116085,729238,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 590,55532,6897,26762,1737,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,22820,5069,84889,7097,23417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,54805,3162,4126,2690,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1583,28957,3174,3032,50507,1281
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,5372,151,2146,551,221935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,2904,7386,5860,6888,92667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6347,83548,5563,51083,9380,116150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,359,57107,5805,23409,33
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,4967,5799,2790,3636,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285,51181,84833,6401,1116,22820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55630,210,4285,54806,3091,6929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,4842,29929,6448,4125,4967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,26762,4864,2516,10,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1801,54539,51441,22978,9409,27344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,5139,410,3082,5346,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,2712,4842,6183,6464,653509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2194,9021,8841,60386,3155,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,191,1232,200205,9512,10128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,656,1588,51103,2713,4899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2243,3708,5293,694,51241,4012
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,11131,4544,5406,3600,65993
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11136,28957,1355,3988,166785,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,7157,8942,488,55186,1678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,5588,8842,26503,948,7026
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.98 2.01 77.14
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.55 | 0.09 | 1.33 | |