Mustafa Erhan Ozer
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:29 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-04-01 02:47:06 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 02:52:42 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 336.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6531,53345,2309,6445,5313,3073
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84342,5213,51441,3156,6938,359
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 359,19,6897,3562,2903,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,64087,48,3482,186,3684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388743,151306,9054,55532,51103,3569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,3673,25821,6579,23236,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,5054,84447,1186,22797,776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2030,10128,57505,493,126328,7099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,57176,5350,388753,23462,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2937,23543,5250,57620,6571,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3784,3992,6248,3290,33,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,10845,11019,509,10911,9415
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,1471,551,2688,1409,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,199,406938,51094,2200,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,23590,83854,359,5019,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,10116,2875,60,10352,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2632,3425,81704,793,5189,4149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4015,5584,216,629,2146,3123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,118,57380,1497,388585,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,50674,7919,178,57620,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,9512,7035,496,10243,57761
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26175,23129,4159,1646,8648,2063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 111,9969,2582,407011,79158,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10135,10008,55902,538,54915,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,6182,345,348,388585,6898
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,56997,1232,54552,7431,2147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,685,84705,23400,79068,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,2203,728294,3099,5740,5744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,2904,407006,2890,506,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5213,1893,540,11213,1019,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,23411,4854,999,3162,64432
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1581,3460,7942,7275,551,219
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7422,81033,51738,3251,6602,3645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,4337,55331,5286,23543,2947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,3483,9575,2203,5330,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3813,2115,7879,115286,22796,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,132001,2030,7389,7372,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,51144,5594,80347,8862,490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,2588,5250,10682,130120,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,941,7325,79644,2792,3952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6868,5321,55005,3357,2034,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,84705,1022,5211,79144,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,1468,2876,4779,6609,23410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5270,3795,63874,2760,9429,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4669,133522,10560,5365,2064,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,6387,3156,2642,644974,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,2992,1270,60386,54344,1340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,23417,51052,9365,1641,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,5473,9241,81033,4780,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,462,55331,1571,56848,407010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,5740,325,57107,549,5105
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7347,10020,3351,5825,4968,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,148738,63892,6898,51119,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4758,3636,7035,91869,35,5551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1645,2948,9663,201305,5443,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,48,4282,10682,152078,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,7056,2271,7355,999,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 336,151306,10911,80070,793,6794
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,411,6536,154,686,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64801,5617,161247,6833,5096,10643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124976,51181,6009,51119,1493,406937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2717,3373,2944,80207,406,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,23654,35,54576,338,4299
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9382,151306,55699,7287,9131,10295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3692,5230,7056,10965,152926,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8659,10382,5538,2712,316,6342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,8675,1353,9370,3460,7056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,6392,23654,819,5139,7422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5105,6948,7287,10159,4700,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,84833,5741,54805,57048,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 665,2157,10599,6720,3157,22797
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,54931,388,54802,5372,3290
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8642,181,316,5286,2949,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2542,3598,406947,10316,3172,3329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3663,10874,10524,7157,51608,23753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9663,3351,51422,51611,10616,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29926,3636,6928,5562,8604,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6198,84649,435,54578,842,5019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2793,7167,7325,1812,3295,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,6182,3099,2739,1737,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4627,54210,275,3795,3663,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,5563,2590,5193,9575,217
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8642,28958,29880,92609,7056,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,1593,4358,388,7276,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,6890,15,10013,27329,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8818,50814,1393,5345,4988,407004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,10642,26003,1591,79133,2064
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2158,3598,487,56945,2834,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23543,6403,131669,8567,7840,7048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10295,131669,55486,4126,25974,6517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,7132,4118,63892,10008,6888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,376497,1718,114548,7389,2712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79949,8560,9054,183,7372,3156
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7919,50674,255738,92667,5563,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5860,7385,2101,26088,11254,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84342,3875,5276,3486,2034,284184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5346,4982,8945,6319,6263,2308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10243,5092,130120,1491,3373,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2790,3791,84300,79796,7040,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4688,9365,239,729230,9451,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3663,57570,5068,593,492,26003
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,7097,3692,27141,1571,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,2169,3483,5506,3954,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,462,203859,358,2785,1798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53632,5970,203068,391051,4967,6448
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,50507,5195,10537,1813,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221935,9698,2791,166785,151,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3931,83884,84572,825,54476,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,7057,6788,56606,54802,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,5096,999,79587,506,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,7320,388962,7287,26517,6890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,1277,2992,4973,283459,2835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4654,7422,54658,6341,1716,5211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,344905,929,356,1601,406934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,4790,3291,341,563,4069
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
114.254 2.064 116.426
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.782 | 0.067 | 3.869 | |