Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-04-22 13:19 -0400 (Tue, 22 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 997/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.14.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: HPiP |
Version: 1.14.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.14.0.tar.gz |
StartedAt: 2025-04-22 10:00:37 -0000 (Tue, 22 Apr 2025) |
EndedAt: 2025-04-22 10:07:40 -0000 (Tue, 22 Apr 2025) |
EllapsedTime: 423.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2025-02-19 r87757) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 38.529 0.347 38.930 corr_plot 36.835 0.259 37.140 FSmethod 36.533 0.272 36.905 pred_ensembel 17.698 0.407 16.939 enrichfindP 0.509 0.016 18.923 getFASTA 0.073 0.004 5.522 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.14.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 96.778486 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.451566 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.056106 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.242134 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.671625 final value 94.147186 converged Fitting Repeat 1 # weights: 305 initial value 99.774148 final value 94.252875 converged Fitting Repeat 2 # weights: 305 initial value 97.430417 iter 10 value 93.940938 iter 20 value 92.652730 iter 30 value 86.799033 iter 40 value 85.722536 iter 50 value 85.657527 iter 60 value 85.573967 iter 70 value 84.948032 iter 80 value 84.837965 final value 84.837726 converged Fitting Repeat 3 # weights: 305 initial value 105.296755 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 94.954460 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 110.229159 iter 10 value 93.437567 iter 20 value 91.693799 iter 30 value 91.693351 final value 91.693344 converged Fitting Repeat 1 # weights: 507 initial value 96.791354 iter 10 value 93.126149 iter 20 value 90.966153 final value 90.963961 converged Fitting Repeat 2 # weights: 507 initial value 102.021723 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 103.348111 final value 94.275363 converged Fitting Repeat 4 # weights: 507 initial value 97.843699 final value 94.455556 converged Fitting Repeat 5 # weights: 507 initial value 110.191595 iter 10 value 94.466842 iter 20 value 94.231594 iter 30 value 94.231398 iter 30 value 94.231397 iter 30 value 94.231397 final value 94.231397 converged Fitting Repeat 1 # weights: 103 initial value 107.627025 iter 10 value 94.545687 iter 20 value 94.449028 iter 30 value 94.224457 iter 40 value 94.124987 iter 50 value 94.107618 iter 60 value 94.103419 iter 70 value 94.012939 iter 80 value 93.784178 iter 90 value 93.772240 iter 100 value 86.459349 final value 86.459349 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.263383 iter 10 value 94.038131 iter 20 value 88.452128 iter 30 value 87.409791 iter 40 value 87.289068 iter 50 value 84.740409 iter 60 value 84.440885 iter 70 value 84.315885 final value 84.300447 converged Fitting Repeat 3 # weights: 103 initial value 101.614767 iter 10 value 94.419824 iter 20 value 87.227113 iter 30 value 86.183461 iter 40 value 84.703156 iter 50 value 84.300578 final value 84.300447 converged Fitting Repeat 4 # weights: 103 initial value 98.489465 iter 10 value 94.413232 iter 20 value 94.120304 iter 30 value 87.446008 iter 40 value 85.108462 iter 50 value 84.893586 iter 60 value 84.577099 iter 70 value 84.282777 iter 80 value 83.695077 iter 90 value 82.765184 iter 100 value 82.688965 final value 82.688965 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 112.930143 iter 10 value 94.415532 iter 20 value 88.431799 iter 30 value 87.232346 iter 40 value 86.046520 iter 50 value 85.222884 iter 60 value 84.232641 iter 70 value 82.510850 iter 80 value 82.386511 iter 90 value 82.309841 final value 82.302663 converged Fitting Repeat 1 # weights: 305 initial value 103.041813 iter 10 value 94.337859 iter 20 value 88.745430 iter 30 value 86.140608 iter 40 value 84.952185 iter 50 value 83.154611 iter 60 value 82.649229 iter 70 value 82.414047 iter 80 value 82.306682 iter 90 value 82.132037 iter 100 value 82.093042 final value 82.093042 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.061927 iter 10 value 90.961258 iter 20 value 85.688882 iter 30 value 84.532918 iter 40 value 82.553705 iter 50 value 81.963379 iter 60 value 81.703251 iter 70 value 81.409586 iter 80 value 81.221834 iter 90 value 81.085219 iter 100 value 81.043669 final value 81.043669 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 125.128471 iter 10 value 91.853163 iter 20 value 87.324523 iter 30 value 85.990012 iter 40 value 85.001566 iter 50 value 82.672886 iter 60 value 82.401675 iter 70 value 81.805890 iter 80 value 80.969769 iter 90 value 80.665017 iter 100 value 80.621245 final value 80.621245 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.286118 iter 10 value 94.902250 iter 20 value 93.928947 iter 30 value 91.276547 iter 40 value 87.205882 iter 50 value 85.689226 iter 60 value 84.470366 iter 70 value 84.129999 iter 80 value 83.648519 iter 90 value 82.883879 iter 100 value 82.521172 final value 82.521172 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.230833 iter 10 value 94.725872 iter 20 value 93.521852 iter 30 value 85.131709 iter 40 value 83.791964 iter 50 value 83.012851 iter 60 value 82.247672 iter 70 value 81.860671 iter 80 value 81.473415 iter 90 value 81.118473 iter 100 value 80.746760 final value 80.746760 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.018354 iter 10 value 95.592854 iter 20 value 93.990677 iter 30 value 87.641341 iter 40 value 84.815700 iter 50 value 82.371366 iter 60 value 81.916099 iter 70 value 81.667206 iter 80 value 81.262976 iter 90 value 81.011384 iter 100 value 80.810983 final value 80.810983 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.924839 iter 10 value 92.501722 iter 20 value 86.859264 iter 30 value 85.584502 iter 40 value 84.833492 iter 50 value 84.435520 iter 60 value 84.121709 iter 70 value 83.995921 iter 80 value 82.860596 iter 90 value 81.724155 iter 100 value 81.588525 final value 81.588525 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 114.215069 iter 10 value 94.786085 iter 20 value 92.703585 iter 30 value 89.946725 iter 40 value 85.721813 iter 50 value 84.395210 iter 60 value 83.662784 iter 70 value 83.539049 iter 80 value 83.139567 iter 90 value 82.278140 iter 100 value 81.917652 final value 81.917652 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.030067 iter 10 value 93.250285 iter 20 value 87.392797 iter 30 value 84.584050 iter 40 value 81.962585 iter 50 value 80.855884 iter 60 value 80.615654 iter 70 value 80.542285 iter 80 value 80.501502 iter 90 value 80.486199 iter 100 value 80.422675 final value 80.422675 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.528952 iter 10 value 93.168891 iter 20 value 89.874397 iter 30 value 85.156756 iter 40 value 83.500008 iter 50 value 82.382174 iter 60 value 81.797587 iter 70 value 81.568048 iter 80 value 81.435163 iter 90 value 81.184354 iter 100 value 81.091512 final value 81.091512 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 105.241481 final value 94.485672 converged Fitting Repeat 2 # weights: 103 initial value 95.615728 iter 10 value 94.485742 iter 20 value 94.478614 iter 30 value 92.349658 iter 40 value 91.089868 final value 91.089776 converged Fitting Repeat 3 # weights: 103 initial value 102.860515 final value 94.485838 converged Fitting Repeat 4 # weights: 103 initial value 103.137217 final value 94.486053 converged Fitting Repeat 5 # weights: 103 initial value 98.337689 iter 10 value 94.277021 iter 20 value 94.268509 iter 30 value 88.197070 iter 40 value 85.264396 iter 50 value 85.169870 final value 85.169824 converged Fitting Repeat 1 # weights: 305 initial value 109.434438 iter 10 value 94.490908 iter 20 value 94.485839 iter 30 value 90.957020 iter 40 value 85.436450 iter 50 value 85.433940 iter 60 value 85.432141 iter 70 value 82.067282 iter 80 value 80.727971 iter 90 value 80.611884 iter 100 value 80.587226 final value 80.587226 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 112.922927 iter 10 value 94.280191 iter 20 value 94.278931 iter 30 value 94.136496 iter 40 value 87.030117 iter 50 value 85.985979 iter 60 value 82.866714 iter 70 value 82.763235 iter 80 value 82.136591 iter 90 value 82.072250 iter 100 value 82.071003 final value 82.071003 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.235813 iter 10 value 94.460315 iter 20 value 94.457379 iter 30 value 94.457178 iter 30 value 94.457178 iter 30 value 94.457177 final value 94.457177 converged Fitting Repeat 4 # weights: 305 initial value 113.072815 iter 10 value 94.488480 iter 20 value 94.290952 iter 30 value 86.267519 iter 40 value 83.905815 final value 83.904196 converged Fitting Repeat 5 # weights: 305 initial value 102.838396 iter 10 value 94.488637 iter 20 value 94.484325 iter 20 value 94.484325 final value 94.484325 converged Fitting Repeat 1 # weights: 507 initial value 95.863379 iter 10 value 84.269092 iter 20 value 83.115178 iter 30 value 82.987991 iter 40 value 82.986696 iter 50 value 82.985441 iter 60 value 82.935848 iter 70 value 81.004692 iter 80 value 79.916995 iter 90 value 79.856930 iter 100 value 79.646703 final value 79.646703 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 97.154636 iter 10 value 94.486881 iter 20 value 94.313292 iter 30 value 90.092315 iter 40 value 89.773940 iter 50 value 89.591566 final value 89.591557 converged Fitting Repeat 3 # weights: 507 initial value 111.434872 iter 10 value 94.283614 iter 20 value 94.023176 iter 30 value 92.464160 iter 40 value 85.988254 iter 50 value 84.346656 iter 60 value 82.203447 iter 70 value 81.847857 iter 80 value 81.826435 iter 90 value 81.826112 final value 81.825944 converged Fitting Repeat 4 # weights: 507 initial value 97.886748 iter 10 value 94.012701 iter 20 value 93.696674 iter 30 value 93.695081 iter 40 value 93.679427 iter 50 value 93.658733 iter 60 value 93.651629 iter 70 value 84.576677 iter 80 value 83.054180 iter 90 value 82.955856 final value 82.955382 converged Fitting Repeat 5 # weights: 507 initial value 133.269558 iter 10 value 94.494097 iter 20 value 94.486247 final value 94.275892 converged Fitting Repeat 1 # weights: 103 initial value 101.857160 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.300831 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.818617 final value 94.484130 converged Fitting Repeat 4 # weights: 103 initial value 101.100194 final value 94.200000 converged Fitting Repeat 5 # weights: 103 initial value 101.479980 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 120.043437 iter 10 value 94.484212 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 102.776560 final value 94.473119 converged Fitting Repeat 3 # weights: 305 initial value 99.840970 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 101.903014 iter 10 value 87.803119 iter 20 value 83.910118 iter 30 value 83.171387 iter 40 value 83.141888 iter 50 value 83.141776 iter 50 value 83.141775 iter 50 value 83.141775 final value 83.141775 converged Fitting Repeat 5 # weights: 305 initial value 106.056468 iter 10 value 94.480244 final value 94.473118 converged Fitting Repeat 1 # weights: 507 initial value 100.444248 iter 10 value 94.371856 iter 20 value 94.364990 final value 94.364984 converged Fitting Repeat 2 # weights: 507 initial value 114.213807 iter 10 value 94.473190 iter 20 value 94.473138 iter 20 value 94.473138 final value 94.473133 converged Fitting Repeat 3 # weights: 507 initial value 126.715860 iter 10 value 94.485483 iter 20 value 94.482705 iter 30 value 94.473183 final value 94.473118 converged Fitting Repeat 4 # weights: 507 initial value 113.316253 final value 94.477594 converged Fitting Repeat 5 # weights: 507 initial value 123.569272 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 103.526939 iter 10 value 93.926551 iter 20 value 88.076817 iter 30 value 87.159327 iter 40 value 87.090977 iter 50 value 86.058741 iter 60 value 85.205950 iter 70 value 85.097033 final value 85.095737 converged Fitting Repeat 2 # weights: 103 initial value 99.894736 iter 10 value 94.601010 iter 20 value 94.488398 iter 30 value 94.159102 iter 40 value 91.815039 iter 50 value 91.438094 iter 60 value 88.177234 iter 70 value 85.344989 iter 80 value 85.243727 iter 90 value 85.207483 iter 100 value 85.191785 final value 85.191785 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 101.485821 iter 10 value 94.487277 iter 20 value 94.192294 iter 30 value 94.100509 iter 40 value 93.103467 iter 50 value 85.297289 iter 60 value 84.397143 iter 70 value 84.057580 iter 80 value 83.907165 iter 90 value 83.747627 iter 100 value 83.329356 final value 83.329356 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 109.283606 iter 10 value 94.486611 iter 20 value 94.162617 iter 30 value 89.780116 iter 40 value 88.806721 iter 50 value 88.414738 iter 60 value 87.466618 iter 70 value 87.391658 final value 87.388602 converged Fitting Repeat 5 # weights: 103 initial value 96.416580 iter 10 value 94.418988 iter 20 value 88.467074 iter 30 value 88.174638 iter 40 value 87.847292 iter 50 value 87.019697 iter 60 value 85.912800 iter 70 value 85.857885 iter 80 value 85.097895 iter 90 value 85.095740 final value 85.095737 converged Fitting Repeat 1 # weights: 305 initial value 99.675728 iter 10 value 91.698222 iter 20 value 87.892213 iter 30 value 86.193513 iter 40 value 84.485466 iter 50 value 84.074435 iter 60 value 83.749886 iter 70 value 83.035711 iter 80 value 82.743050 iter 90 value 82.691493 iter 100 value 82.618889 final value 82.618889 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.183486 iter 10 value 94.999159 iter 20 value 94.640101 iter 30 value 94.347933 iter 40 value 94.167587 iter 50 value 94.147468 iter 60 value 94.007969 iter 70 value 88.253804 iter 80 value 85.887492 iter 90 value 84.139561 iter 100 value 83.018677 final value 83.018677 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.736020 iter 10 value 94.370477 iter 20 value 88.869993 iter 30 value 86.142293 iter 40 value 84.167950 iter 50 value 82.925108 iter 60 value 82.785830 iter 70 value 82.571011 iter 80 value 82.228118 iter 90 value 82.143287 iter 100 value 81.982464 final value 81.982464 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.591635 iter 10 value 94.495442 iter 20 value 89.917186 iter 30 value 85.578686 iter 40 value 83.765339 iter 50 value 83.386967 iter 60 value 83.196723 iter 70 value 83.080115 iter 80 value 82.614682 iter 90 value 82.329989 iter 100 value 82.144309 final value 82.144309 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 118.897144 iter 10 value 94.433968 iter 20 value 92.093240 iter 30 value 88.496017 iter 40 value 87.089928 iter 50 value 86.906040 iter 60 value 86.847860 iter 70 value 86.778563 iter 80 value 85.664759 iter 90 value 83.812847 iter 100 value 82.780439 final value 82.780439 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.165409 iter 10 value 88.093603 iter 20 value 87.583220 iter 30 value 86.146338 iter 40 value 84.214669 iter 50 value 83.864942 iter 60 value 83.706424 iter 70 value 83.397919 iter 80 value 83.137325 iter 90 value 82.937659 iter 100 value 82.658401 final value 82.658401 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 123.616073 iter 10 value 92.198549 iter 20 value 87.848740 iter 30 value 87.235675 iter 40 value 86.810388 iter 50 value 85.237979 iter 60 value 84.671661 iter 70 value 83.998650 iter 80 value 83.965989 iter 90 value 83.753558 iter 100 value 83.382342 final value 83.382342 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 122.905450 iter 10 value 93.479134 iter 20 value 89.794600 iter 30 value 84.384558 iter 40 value 82.663657 iter 50 value 82.114676 iter 60 value 82.072278 iter 70 value 81.997681 iter 80 value 81.855366 iter 90 value 81.818672 iter 100 value 81.670517 final value 81.670517 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.235095 iter 10 value 94.853231 iter 20 value 93.466879 iter 30 value 91.143510 iter 40 value 89.750962 iter 50 value 85.148392 iter 60 value 84.473958 iter 70 value 83.991807 iter 80 value 82.859726 iter 90 value 82.410527 iter 100 value 82.013591 final value 82.013591 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.845903 iter 10 value 94.499256 iter 20 value 93.668592 iter 30 value 90.794739 iter 40 value 88.036947 iter 50 value 85.505077 iter 60 value 84.377555 iter 70 value 83.813922 iter 80 value 82.477090 iter 90 value 82.098759 iter 100 value 81.921452 final value 81.921452 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.199881 final value 94.485889 converged Fitting Repeat 2 # weights: 103 initial value 101.661833 iter 10 value 94.485922 final value 94.485917 converged Fitting Repeat 3 # weights: 103 initial value 99.597216 final value 94.485940 converged Fitting Repeat 4 # weights: 103 initial value 96.644808 final value 94.485617 converged Fitting Repeat 5 # weights: 103 initial value 98.686684 iter 10 value 94.485913 iter 20 value 94.384720 iter 30 value 88.685692 iter 40 value 87.603205 iter 50 value 87.600256 final value 87.600178 converged Fitting Repeat 1 # weights: 305 initial value 107.636357 iter 10 value 94.496943 iter 20 value 94.441463 iter 30 value 94.180863 iter 40 value 87.296299 iter 50 value 85.598512 iter 60 value 85.008678 final value 85.008623 converged Fitting Repeat 2 # weights: 305 initial value 101.616685 iter 10 value 94.489208 iter 20 value 94.481075 iter 30 value 94.473150 final value 94.473134 converged Fitting Repeat 3 # weights: 305 initial value 109.166793 iter 10 value 94.496708 iter 20 value 94.491418 iter 30 value 94.480307 iter 40 value 94.466251 iter 50 value 89.459925 iter 60 value 88.704648 iter 70 value 88.637953 final value 88.637717 converged Fitting Repeat 4 # weights: 305 initial value 94.504150 final value 94.489107 converged Fitting Repeat 5 # weights: 305 initial value 95.635141 iter 10 value 94.478520 iter 20 value 94.473369 iter 30 value 94.466119 iter 40 value 86.963427 iter 50 value 86.957527 iter 60 value 86.957191 iter 70 value 86.865689 iter 80 value 86.539328 iter 90 value 84.979506 iter 100 value 84.884741 final value 84.884741 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.880896 iter 10 value 94.480856 iter 20 value 94.440871 iter 30 value 85.766591 iter 40 value 84.125246 iter 50 value 83.971129 final value 83.970560 converged Fitting Repeat 2 # weights: 507 initial value 97.805411 iter 10 value 94.494782 iter 20 value 94.451210 iter 30 value 94.108267 iter 40 value 94.096444 iter 50 value 94.086196 iter 60 value 88.975683 iter 70 value 83.091949 iter 80 value 82.465581 iter 90 value 82.191379 iter 100 value 82.166296 final value 82.166296 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 136.248824 iter 10 value 94.506074 iter 20 value 94.493926 iter 30 value 87.531460 iter 40 value 87.488369 iter 50 value 87.481699 iter 60 value 87.477803 final value 87.477732 converged Fitting Repeat 4 # weights: 507 initial value 99.231707 iter 10 value 94.481458 iter 20 value 94.481207 iter 30 value 94.029226 iter 40 value 89.008962 iter 50 value 89.007600 iter 60 value 88.984135 iter 70 value 87.876137 iter 80 value 86.837665 iter 90 value 86.815483 iter 100 value 86.381667 final value 86.381667 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 95.264115 iter 10 value 94.222375 iter 20 value 88.435733 iter 30 value 85.337957 iter 40 value 83.451748 iter 50 value 83.116154 iter 60 value 82.194993 iter 70 value 82.049075 iter 80 value 81.305358 iter 90 value 81.134335 iter 100 value 81.007840 final value 81.007840 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 106.225729 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.012194 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.552876 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.491791 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.866897 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 103.975939 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 107.152385 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 96.533222 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 96.776382 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 97.337597 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 106.723398 iter 10 value 93.455694 iter 20 value 89.224715 iter 30 value 88.887136 iter 40 value 88.679982 iter 50 value 88.676782 final value 88.676778 converged Fitting Repeat 2 # weights: 507 initial value 114.751064 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 96.620294 iter 10 value 93.806511 iter 20 value 91.050656 iter 30 value 87.287598 final value 87.283810 converged Fitting Repeat 4 # weights: 507 initial value 109.651986 iter 10 value 88.396871 iter 20 value 87.134583 iter 30 value 87.122692 final value 87.122677 converged Fitting Repeat 5 # weights: 507 initial value 112.534019 iter 10 value 94.354409 final value 94.354396 converged Fitting Repeat 1 # weights: 103 initial value 96.773170 iter 10 value 94.425455 iter 20 value 90.935989 iter 30 value 88.264350 iter 40 value 87.659300 iter 50 value 87.570689 final value 87.568186 converged Fitting Repeat 2 # weights: 103 initial value 96.473153 iter 10 value 94.520893 iter 20 value 94.477109 iter 30 value 90.914148 iter 40 value 84.194572 iter 50 value 82.708652 iter 60 value 79.328442 iter 70 value 78.342432 iter 80 value 78.151813 iter 90 value 77.764783 iter 100 value 77.634452 final value 77.634452 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.055556 iter 10 value 94.395343 iter 20 value 90.590741 iter 30 value 88.867109 iter 40 value 88.384937 iter 50 value 87.575391 iter 60 value 87.568337 final value 87.568186 converged Fitting Repeat 4 # weights: 103 initial value 97.823731 iter 10 value 94.437222 iter 20 value 82.156077 iter 30 value 79.312416 iter 40 value 78.290097 iter 50 value 77.574323 iter 60 value 77.320143 iter 70 value 77.272234 iter 80 value 77.236386 iter 90 value 77.186652 final value 77.186275 converged Fitting Repeat 5 # weights: 103 initial value 98.869788 iter 10 value 94.491176 iter 20 value 94.428704 iter 30 value 94.412757 iter 40 value 93.561843 iter 50 value 89.758562 iter 60 value 87.415467 iter 70 value 87.201385 iter 80 value 87.197520 final value 87.197358 converged Fitting Repeat 1 # weights: 305 initial value 103.822069 iter 10 value 94.506215 iter 20 value 94.274646 iter 30 value 85.222717 iter 40 value 82.396054 iter 50 value 81.114033 iter 60 value 80.224734 iter 70 value 79.304865 iter 80 value 77.950458 iter 90 value 77.609921 iter 100 value 77.333117 final value 77.333117 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.884697 iter 10 value 94.559567 iter 20 value 85.454245 iter 30 value 81.666882 iter 40 value 78.988950 iter 50 value 78.672919 iter 60 value 77.485137 iter 70 value 76.844110 iter 80 value 76.406247 iter 90 value 76.175344 iter 100 value 76.102502 final value 76.102502 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 98.136711 iter 10 value 91.578988 iter 20 value 83.378923 iter 30 value 82.230090 iter 40 value 81.565431 iter 50 value 78.209478 iter 60 value 77.751153 iter 70 value 77.376320 iter 80 value 77.172109 iter 90 value 76.178934 iter 100 value 75.957890 final value 75.957890 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.096352 iter 10 value 94.635125 iter 20 value 94.530208 iter 30 value 94.314375 iter 40 value 89.577516 iter 50 value 87.628987 iter 60 value 85.686832 iter 70 value 85.185027 iter 80 value 82.048991 iter 90 value 80.718357 iter 100 value 80.113236 final value 80.113236 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.664691 iter 10 value 95.100606 iter 20 value 94.620354 iter 30 value 94.311460 iter 40 value 89.549640 iter 50 value 88.085139 iter 60 value 87.961288 iter 70 value 85.328718 iter 80 value 82.428389 iter 90 value 82.051024 iter 100 value 81.567592 final value 81.567592 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 118.500179 iter 10 value 94.922424 iter 20 value 89.057855 iter 30 value 84.459987 iter 40 value 79.207845 iter 50 value 77.595340 iter 60 value 77.230258 iter 70 value 76.901888 iter 80 value 76.611159 iter 90 value 76.412574 iter 100 value 76.299081 final value 76.299081 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.346845 iter 10 value 101.435192 iter 20 value 89.777968 iter 30 value 83.051069 iter 40 value 82.576024 iter 50 value 81.229413 iter 60 value 80.873649 iter 70 value 80.356546 iter 80 value 78.722460 iter 90 value 77.526124 iter 100 value 76.187365 final value 76.187365 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.483998 iter 10 value 94.064706 iter 20 value 90.776253 iter 30 value 87.591601 iter 40 value 87.366573 iter 50 value 85.768808 iter 60 value 81.738991 iter 70 value 80.695519 iter 80 value 80.576773 iter 90 value 80.402613 iter 100 value 79.346005 final value 79.346005 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.025054 iter 10 value 95.088305 iter 20 value 89.413705 iter 30 value 85.048435 iter 40 value 83.997220 iter 50 value 82.004486 iter 60 value 79.557172 iter 70 value 78.218725 iter 80 value 77.832315 iter 90 value 77.760177 iter 100 value 77.619656 final value 77.619656 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.451571 iter 10 value 94.703752 iter 20 value 94.050713 iter 30 value 89.429066 iter 40 value 85.521254 iter 50 value 82.095513 iter 60 value 79.748196 iter 70 value 79.300583 iter 80 value 79.209061 iter 90 value 79.154945 iter 100 value 79.080310 final value 79.080310 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.123925 final value 94.485564 converged Fitting Repeat 2 # weights: 103 initial value 103.958418 iter 10 value 94.356051 iter 20 value 94.354489 iter 30 value 94.188349 iter 40 value 81.765786 iter 50 value 81.759158 iter 60 value 81.748673 iter 70 value 79.563063 iter 80 value 79.175202 iter 90 value 78.930396 iter 100 value 78.929598 final value 78.929598 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.149828 iter 10 value 86.003295 iter 20 value 84.609925 iter 30 value 84.210382 iter 40 value 84.208302 iter 50 value 84.204395 iter 60 value 81.858400 iter 70 value 81.724555 iter 80 value 81.435406 iter 90 value 81.309211 iter 100 value 81.308974 final value 81.308974 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.073112 iter 10 value 93.026171 iter 20 value 92.610893 iter 30 value 92.155343 iter 40 value 92.133707 iter 50 value 92.132836 iter 60 value 92.132602 final value 92.132563 converged Fitting Repeat 5 # weights: 103 initial value 102.450950 final value 94.327760 converged Fitting Repeat 1 # weights: 305 initial value 99.861834 iter 10 value 94.317475 iter 20 value 94.310724 iter 30 value 94.309576 iter 40 value 93.635436 iter 50 value 90.204938 iter 60 value 90.199734 iter 70 value 90.196837 iter 80 value 89.831991 iter 90 value 89.772819 iter 100 value 89.771910 final value 89.771910 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.319730 iter 10 value 94.489980 final value 94.489121 converged Fitting Repeat 3 # weights: 305 initial value 99.890890 iter 10 value 94.330303 iter 20 value 89.730789 iter 30 value 81.304142 iter 40 value 81.275391 iter 50 value 80.996916 iter 60 value 80.977791 final value 80.976358 converged Fitting Repeat 4 # weights: 305 initial value 105.834644 iter 10 value 94.488912 iter 20 value 94.483856 iter 30 value 90.621217 iter 40 value 86.710184 iter 50 value 86.703519 iter 60 value 86.702840 iter 70 value 86.640288 iter 80 value 86.089507 iter 90 value 83.048549 iter 100 value 78.083821 final value 78.083821 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 103.211034 iter 10 value 94.488866 iter 20 value 94.484228 iter 30 value 94.435641 final value 94.354484 converged Fitting Repeat 1 # weights: 507 initial value 115.937305 iter 10 value 94.334349 iter 20 value 93.426076 iter 30 value 88.156122 iter 40 value 87.515959 iter 50 value 87.514509 iter 60 value 87.514186 final value 87.514167 converged Fitting Repeat 2 # weights: 507 initial value 109.953520 iter 10 value 94.510553 iter 20 value 94.500299 iter 30 value 94.371184 iter 40 value 94.326084 iter 50 value 91.554688 iter 60 value 90.780783 iter 70 value 87.589109 iter 80 value 87.265853 iter 90 value 87.262664 iter 100 value 87.255745 final value 87.255745 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 145.184415 iter 10 value 88.053454 iter 20 value 82.355033 iter 30 value 81.990590 iter 40 value 81.819581 iter 50 value 81.811489 final value 81.811032 converged Fitting Repeat 4 # weights: 507 initial value 98.703735 iter 10 value 94.319552 iter 20 value 94.219025 iter 30 value 94.215242 iter 40 value 94.212542 iter 40 value 94.212541 iter 40 value 94.212541 final value 94.212541 converged Fitting Repeat 5 # weights: 507 initial value 109.480533 iter 10 value 94.432187 iter 20 value 94.428568 iter 30 value 94.371781 iter 40 value 94.342102 iter 50 value 94.341261 iter 60 value 94.339983 iter 70 value 94.225617 iter 80 value 94.017241 iter 90 value 93.688947 iter 100 value 93.389935 final value 93.389935 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.891654 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 98.670883 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 103.883832 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 97.239899 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 115.263422 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 117.436344 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 95.338183 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 103.462262 iter 10 value 92.881235 iter 20 value 92.561993 final value 92.561934 converged Fitting Repeat 4 # weights: 305 initial value 98.469710 iter 10 value 92.171035 iter 20 value 92.083834 final value 92.083334 converged Fitting Repeat 5 # weights: 305 initial value 117.131248 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 102.700737 final value 93.582418 converged Fitting Repeat 2 # weights: 507 initial value 94.513095 iter 10 value 88.851665 iter 20 value 83.338709 iter 30 value 83.220660 iter 40 value 83.057396 iter 50 value 82.521741 iter 60 value 81.799584 iter 70 value 80.991070 iter 80 value 80.797231 iter 90 value 80.764450 iter 100 value 80.756429 final value 80.756429 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.327345 final value 93.582418 converged Fitting Repeat 4 # weights: 507 initial value 110.053433 final value 93.582418 converged Fitting Repeat 5 # weights: 507 initial value 110.496796 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 96.182391 iter 10 value 94.057856 iter 20 value 93.708410 iter 30 value 91.523819 iter 40 value 84.862312 iter 50 value 84.675384 iter 60 value 84.438796 iter 70 value 83.479287 iter 80 value 82.851824 iter 90 value 81.938214 iter 100 value 81.784868 final value 81.784868 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.973768 iter 10 value 94.020735 iter 20 value 93.062571 iter 30 value 92.910355 iter 40 value 89.617008 iter 50 value 85.694716 iter 60 value 84.584118 iter 70 value 83.603048 iter 80 value 82.051991 iter 90 value 81.771106 final value 81.659384 converged Fitting Repeat 3 # weights: 103 initial value 96.281712 iter 10 value 94.055483 iter 20 value 93.068215 iter 30 value 92.934574 iter 40 value 92.862304 iter 50 value 92.627265 iter 60 value 87.169277 iter 70 value 86.249379 iter 80 value 85.271351 iter 90 value 84.383233 iter 100 value 83.829170 final value 83.829170 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.035952 iter 10 value 94.063323 iter 20 value 93.455389 iter 30 value 89.936932 iter 40 value 89.268936 iter 50 value 86.641860 iter 60 value 85.351735 iter 70 value 84.438958 iter 80 value 83.077255 iter 90 value 81.902029 iter 100 value 81.787256 final value 81.787256 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.175848 iter 10 value 95.450381 iter 20 value 94.045761 iter 30 value 93.696284 iter 40 value 93.687750 iter 50 value 88.314645 iter 60 value 86.356049 iter 70 value 85.217565 iter 80 value 83.313165 iter 90 value 82.622780 iter 100 value 82.172739 final value 82.172739 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.218277 iter 10 value 93.999950 iter 20 value 92.859967 iter 30 value 92.554296 iter 40 value 86.393874 iter 50 value 84.803916 iter 60 value 84.110119 iter 70 value 83.614175 iter 80 value 83.070529 iter 90 value 82.285513 iter 100 value 81.510211 final value 81.510211 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 112.854075 iter 10 value 93.943044 iter 20 value 91.754394 iter 30 value 90.466945 iter 40 value 90.123487 iter 50 value 89.688336 iter 60 value 85.692050 iter 70 value 84.870197 iter 80 value 82.588179 iter 90 value 82.207918 iter 100 value 81.703090 final value 81.703090 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.842054 iter 10 value 94.724886 iter 20 value 93.886502 iter 30 value 85.767148 iter 40 value 84.663240 iter 50 value 84.295230 iter 60 value 83.930697 iter 70 value 83.026040 iter 80 value 80.994288 iter 90 value 80.654932 iter 100 value 80.525337 final value 80.525337 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.435173 iter 10 value 93.260918 iter 20 value 91.306427 iter 30 value 89.151959 iter 40 value 87.756455 iter 50 value 86.850937 iter 60 value 86.391198 iter 70 value 85.556337 iter 80 value 85.274115 iter 90 value 85.191180 iter 100 value 84.799602 final value 84.799602 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 110.422457 iter 10 value 94.511980 iter 20 value 89.223969 iter 30 value 85.853763 iter 40 value 84.480599 iter 50 value 84.226919 iter 60 value 83.774594 iter 70 value 83.376439 iter 80 value 83.164714 iter 90 value 82.288305 iter 100 value 81.729547 final value 81.729547 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.412692 iter 10 value 93.919404 iter 20 value 87.624400 iter 30 value 86.736671 iter 40 value 86.169062 iter 50 value 83.376564 iter 60 value 82.711618 iter 70 value 82.559994 iter 80 value 82.451942 iter 90 value 82.140080 iter 100 value 81.288523 final value 81.288523 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.116715 iter 10 value 94.072470 iter 20 value 92.916039 iter 30 value 92.676419 iter 40 value 92.475225 iter 50 value 90.975596 iter 60 value 87.851834 iter 70 value 86.481828 iter 80 value 84.873677 iter 90 value 81.580870 iter 100 value 81.200260 final value 81.200260 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 128.619437 iter 10 value 94.671209 iter 20 value 89.052880 iter 30 value 87.248995 iter 40 value 84.478317 iter 50 value 82.790986 iter 60 value 81.845865 iter 70 value 80.518071 iter 80 value 80.326458 iter 90 value 80.016630 iter 100 value 79.903030 final value 79.903030 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.541643 iter 10 value 94.369310 iter 20 value 92.706913 iter 30 value 92.472905 iter 40 value 90.597131 iter 50 value 83.918078 iter 60 value 82.304607 iter 70 value 80.945152 iter 80 value 80.400087 iter 90 value 80.060622 iter 100 value 80.028094 final value 80.028094 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.462281 iter 10 value 90.261728 iter 20 value 86.360983 iter 30 value 85.105418 iter 40 value 83.865490 iter 50 value 82.654888 iter 60 value 82.103471 iter 70 value 81.863820 iter 80 value 81.337824 iter 90 value 81.256850 iter 100 value 81.236367 final value 81.236367 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.239714 final value 94.054684 converged Fitting Repeat 2 # weights: 103 initial value 101.707507 final value 94.054592 converged Fitting Repeat 3 # weights: 103 initial value 103.551402 final value 94.054326 converged Fitting Repeat 4 # weights: 103 initial value 95.763960 final value 94.054714 converged Fitting Repeat 5 # weights: 103 initial value 95.057273 final value 94.054812 converged Fitting Repeat 1 # weights: 305 initial value 94.781453 iter 10 value 94.057943 iter 20 value 93.610288 final value 93.582895 converged Fitting Repeat 2 # weights: 305 initial value 99.607272 iter 10 value 93.999201 iter 20 value 93.810930 iter 30 value 91.979621 iter 40 value 91.805242 iter 50 value 86.688287 iter 60 value 86.103306 iter 70 value 85.921597 iter 80 value 85.835463 iter 90 value 85.834975 final value 85.834954 converged Fitting Repeat 3 # weights: 305 initial value 98.135703 iter 10 value 94.057722 iter 20 value 93.186087 iter 30 value 92.832805 iter 40 value 92.832252 iter 50 value 92.831958 final value 92.831856 converged Fitting Repeat 4 # weights: 305 initial value 118.821090 iter 10 value 94.057919 iter 20 value 93.914329 iter 30 value 92.564024 iter 40 value 91.116146 iter 50 value 84.104647 iter 60 value 82.481885 iter 70 value 82.183885 iter 80 value 81.323621 iter 90 value 81.316940 final value 81.316933 converged Fitting Repeat 5 # weights: 305 initial value 100.663916 iter 10 value 94.057280 iter 20 value 93.982566 iter 30 value 93.582849 iter 30 value 93.582849 iter 30 value 93.582849 final value 93.582849 converged Fitting Repeat 1 # weights: 507 initial value 100.221405 iter 10 value 94.058823 iter 20 value 93.601159 iter 30 value 86.393139 iter 40 value 84.407493 iter 50 value 83.006906 iter 60 value 82.889955 iter 70 value 82.887683 iter 80 value 82.887587 iter 90 value 82.871176 final value 82.870782 converged Fitting Repeat 2 # weights: 507 initial value 108.267344 iter 10 value 93.420041 iter 20 value 92.824685 iter 30 value 92.815538 iter 40 value 92.809040 iter 50 value 91.790576 iter 60 value 90.374440 iter 70 value 89.855936 iter 80 value 89.847445 iter 80 value 89.847445 final value 89.847412 converged Fitting Repeat 3 # weights: 507 initial value 105.873745 iter 10 value 93.590710 iter 20 value 93.505243 iter 30 value 86.124990 iter 40 value 84.209849 iter 50 value 83.814841 iter 60 value 83.401817 iter 70 value 83.385543 iter 80 value 83.244288 iter 90 value 83.146955 final value 83.143275 converged Fitting Repeat 4 # weights: 507 initial value 99.248137 iter 10 value 94.060479 iter 20 value 94.048859 iter 30 value 89.595979 iter 40 value 86.260313 iter 50 value 86.073189 iter 60 value 86.046897 iter 70 value 86.040183 iter 80 value 85.744974 iter 90 value 85.094011 iter 100 value 85.035625 final value 85.035625 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.929599 iter 10 value 94.060812 iter 20 value 93.964236 iter 30 value 93.582892 iter 30 value 93.582892 iter 30 value 93.582892 final value 93.582892 converged Fitting Repeat 1 # weights: 103 initial value 95.552073 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 94.715796 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.595896 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 95.626558 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 96.500068 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.800411 iter 10 value 88.036294 iter 20 value 84.797529 iter 30 value 84.783604 final value 84.783350 converged Fitting Repeat 2 # weights: 305 initial value 107.226407 iter 10 value 93.921518 final value 93.921213 converged Fitting Repeat 3 # weights: 305 initial value 97.790793 final value 93.967787 converged Fitting Repeat 4 # weights: 305 initial value 99.388988 iter 10 value 94.034198 final value 94.032967 converged Fitting Repeat 5 # weights: 305 initial value 99.172185 final value 93.991525 converged Fitting Repeat 1 # weights: 507 initial value 114.188405 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 101.730712 iter 10 value 94.052441 iter 20 value 94.008784 final value 94.008697 converged Fitting Repeat 3 # weights: 507 initial value 110.267304 final value 93.991525 converged Fitting Repeat 4 # weights: 507 initial value 96.886230 iter 10 value 85.556598 iter 20 value 82.709267 final value 82.709265 converged Fitting Repeat 5 # weights: 507 initial value 107.238412 iter 10 value 93.671796 final value 93.671508 converged Fitting Repeat 1 # weights: 103 initial value 104.045735 iter 10 value 94.056960 iter 20 value 94.007280 iter 30 value 93.091004 iter 40 value 89.157834 iter 50 value 88.918579 iter 60 value 84.362051 iter 70 value 84.015923 iter 80 value 83.839842 iter 90 value 83.783908 iter 100 value 83.710979 final value 83.710979 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.342035 iter 10 value 94.052645 iter 20 value 89.864661 iter 30 value 88.129075 iter 40 value 84.737311 iter 50 value 84.197113 iter 60 value 84.030899 iter 70 value 83.989595 iter 80 value 80.883564 iter 90 value 80.708277 iter 100 value 80.698384 final value 80.698384 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 98.599082 iter 10 value 94.060125 iter 20 value 94.010500 iter 30 value 85.483009 iter 40 value 85.341644 iter 50 value 83.162501 iter 60 value 82.608380 iter 70 value 82.342304 iter 80 value 82.260590 iter 90 value 82.206702 final value 82.206700 converged Fitting Repeat 4 # weights: 103 initial value 99.986817 iter 10 value 94.055514 iter 20 value 93.279002 iter 30 value 87.598089 iter 40 value 84.716509 iter 50 value 84.509508 iter 60 value 83.534379 iter 70 value 83.057769 iter 80 value 82.994464 iter 90 value 82.972550 iter 100 value 82.948934 final value 82.948934 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.140571 iter 10 value 92.117210 iter 20 value 86.424076 iter 30 value 85.700566 iter 40 value 85.466090 iter 50 value 84.844971 iter 60 value 84.622957 final value 84.622909 converged Fitting Repeat 1 # weights: 305 initial value 100.821987 iter 10 value 94.420770 iter 20 value 94.069246 iter 30 value 92.947026 iter 40 value 86.410978 iter 50 value 85.130009 iter 60 value 82.959848 iter 70 value 81.090076 iter 80 value 80.698950 iter 90 value 80.633831 iter 100 value 80.531789 final value 80.531789 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.717447 iter 10 value 94.039167 iter 20 value 92.685700 iter 30 value 90.497168 iter 40 value 87.771812 iter 50 value 84.641180 iter 60 value 82.152886 iter 70 value 80.868334 iter 80 value 80.344826 iter 90 value 80.110671 iter 100 value 79.917465 final value 79.917465 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.956167 iter 10 value 94.048715 iter 20 value 92.778098 iter 30 value 88.448815 iter 40 value 85.745048 iter 50 value 85.495927 iter 60 value 83.386091 iter 70 value 82.593600 iter 80 value 82.086782 iter 90 value 81.974416 iter 100 value 81.090610 final value 81.090610 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.520627 iter 10 value 94.005504 iter 20 value 88.791058 iter 30 value 85.736378 iter 40 value 83.852139 iter 50 value 82.114158 iter 60 value 81.053578 iter 70 value 80.835123 iter 80 value 80.188622 iter 90 value 79.814454 iter 100 value 79.523812 final value 79.523812 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 108.512728 iter 10 value 94.031194 iter 20 value 92.606009 iter 30 value 86.361164 iter 40 value 84.286256 iter 50 value 82.702966 iter 60 value 80.656967 iter 70 value 80.135462 iter 80 value 79.697078 iter 90 value 79.600677 iter 100 value 79.517729 final value 79.517729 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.951644 iter 10 value 93.958712 iter 20 value 85.072630 iter 30 value 83.670447 iter 40 value 80.922150 iter 50 value 80.359033 iter 60 value 79.559922 iter 70 value 79.260709 iter 80 value 79.042650 iter 90 value 78.832781 iter 100 value 78.775724 final value 78.775724 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 128.839511 iter 10 value 93.832229 iter 20 value 84.167635 iter 30 value 83.578525 iter 40 value 82.714846 iter 50 value 80.903676 iter 60 value 80.554239 iter 70 value 80.163500 iter 80 value 79.789778 iter 90 value 79.659051 iter 100 value 79.609924 final value 79.609924 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.238220 iter 10 value 92.453709 iter 20 value 85.482796 iter 30 value 82.204271 iter 40 value 81.188512 iter 50 value 80.752407 iter 60 value 80.312344 iter 70 value 79.655221 iter 80 value 79.398167 iter 90 value 79.128625 iter 100 value 79.038365 final value 79.038365 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.337779 iter 10 value 94.024688 iter 20 value 90.136745 iter 30 value 86.487030 iter 40 value 84.847726 iter 50 value 83.001708 iter 60 value 80.605681 iter 70 value 80.179484 iter 80 value 79.345691 iter 90 value 79.104209 iter 100 value 78.991706 final value 78.991706 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.436361 iter 10 value 94.014845 iter 20 value 87.262911 iter 30 value 84.931025 iter 40 value 84.679598 iter 50 value 83.638462 iter 60 value 80.961750 iter 70 value 79.661853 iter 80 value 79.339825 iter 90 value 79.322563 iter 100 value 79.253158 final value 79.253158 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 106.605438 final value 94.034307 converged Fitting Repeat 2 # weights: 103 initial value 95.184862 final value 94.054663 converged Fitting Repeat 3 # weights: 103 initial value 114.858484 iter 10 value 94.054455 iter 20 value 93.724243 iter 30 value 92.170126 iter 40 value 91.956180 iter 50 value 91.931238 final value 91.931210 converged Fitting Repeat 4 # weights: 103 initial value 98.812820 final value 94.054335 converged Fitting Repeat 5 # weights: 103 initial value 115.916561 final value 94.054941 converged Fitting Repeat 1 # weights: 305 initial value 120.709029 iter 10 value 94.058229 final value 94.052942 converged Fitting Repeat 2 # weights: 305 initial value 110.154846 iter 10 value 94.058131 iter 20 value 92.764094 iter 30 value 85.769178 final value 85.763809 converged Fitting Repeat 3 # weights: 305 initial value 96.863704 iter 10 value 83.991702 iter 20 value 83.787360 iter 30 value 83.750306 iter 40 value 83.538678 iter 50 value 83.536445 iter 60 value 83.533450 iter 70 value 83.499932 iter 80 value 83.477428 iter 90 value 83.477040 final value 83.477014 converged Fitting Repeat 4 # weights: 305 initial value 107.580848 iter 10 value 94.057931 iter 20 value 94.052579 iter 30 value 91.174993 iter 40 value 87.085115 iter 50 value 86.819761 iter 60 value 85.963867 iter 70 value 85.957527 iter 80 value 85.956795 iter 90 value 85.955963 final value 85.955932 converged Fitting Repeat 5 # weights: 305 initial value 96.058917 iter 10 value 94.057182 iter 20 value 93.914403 iter 30 value 89.781735 iter 40 value 88.627685 iter 50 value 85.636990 iter 60 value 85.332529 iter 70 value 85.317065 iter 80 value 84.964657 iter 90 value 81.959367 iter 100 value 81.943081 final value 81.943081 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.262915 iter 10 value 94.040872 iter 20 value 93.936671 iter 30 value 84.320790 final value 84.225026 converged Fitting Repeat 2 # weights: 507 initial value 105.034654 iter 10 value 94.061290 iter 20 value 94.049826 iter 30 value 93.889812 iter 40 value 93.869428 iter 50 value 93.867711 final value 93.865343 converged Fitting Repeat 3 # weights: 507 initial value 101.359430 iter 10 value 93.679907 iter 20 value 93.671287 iter 30 value 91.797286 iter 40 value 87.924677 iter 50 value 86.884728 iter 60 value 83.176285 iter 70 value 83.037761 iter 80 value 82.301184 iter 90 value 79.653565 iter 100 value 77.819307 final value 77.819307 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.594262 iter 10 value 94.061053 iter 20 value 93.989091 iter 30 value 84.996376 final value 84.992810 converged Fitting Repeat 5 # weights: 507 initial value 107.529428 iter 10 value 94.030854 iter 20 value 93.631590 iter 30 value 93.592695 iter 40 value 93.591765 iter 50 value 93.591029 iter 60 value 93.590545 iter 70 value 93.586738 iter 80 value 86.181041 iter 90 value 86.176151 iter 100 value 85.313764 final value 85.313764 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 165.052354 iter 10 value 117.932547 iter 20 value 117.616116 iter 30 value 117.613160 iter 40 value 117.490908 iter 50 value 109.411479 iter 60 value 107.522616 iter 70 value 104.029955 iter 80 value 103.534889 iter 90 value 103.356106 iter 100 value 101.858718 final value 101.858718 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 129.696806 iter 10 value 117.897985 iter 20 value 117.273109 iter 30 value 115.616927 final value 115.616775 converged Fitting Repeat 3 # weights: 507 initial value 120.452789 iter 10 value 117.739521 iter 20 value 117.735854 iter 30 value 112.635419 iter 40 value 109.530078 iter 50 value 109.476844 iter 60 value 109.165409 iter 70 value 108.966827 final value 108.966704 converged Fitting Repeat 4 # weights: 507 initial value 119.232469 iter 10 value 117.898413 iter 20 value 117.829786 iter 30 value 117.540479 iter 40 value 116.980451 iter 50 value 113.581615 iter 60 value 107.258133 iter 70 value 107.119823 iter 80 value 106.801321 iter 90 value 106.793016 iter 100 value 106.228539 final value 106.228539 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 139.026978 iter 10 value 117.766808 iter 20 value 117.744362 iter 30 value 116.173699 iter 40 value 107.129694 iter 50 value 106.755561 iter 60 value 106.755072 iter 70 value 106.754603 iter 80 value 106.752569 final value 106.751967 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Tue Apr 22 10:07:36 2025 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 56.814 1.306 154.536
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 36.533 | 0.272 | 36.905 | |
FreqInteractors | 0.288 | 0.004 | 0.292 | |
calculateAAC | 0.042 | 0.004 | 0.045 | |
calculateAutocor | 0.700 | 0.004 | 0.706 | |
calculateCTDC | 0.091 | 0.000 | 0.091 | |
calculateCTDD | 0.717 | 0.000 | 0.718 | |
calculateCTDT | 0.256 | 0.004 | 0.261 | |
calculateCTriad | 0.463 | 0.004 | 0.467 | |
calculateDC | 0.131 | 0.000 | 0.131 | |
calculateF | 0.436 | 0.000 | 0.437 | |
calculateKSAAP | 0.139 | 0.004 | 0.142 | |
calculateQD_Sm | 2.326 | 0.024 | 2.354 | |
calculateTC | 2.397 | 0.032 | 2.433 | |
calculateTC_Sm | 0.317 | 0.004 | 0.322 | |
corr_plot | 36.835 | 0.259 | 37.140 | |
enrichfindP | 0.509 | 0.016 | 18.923 | |
enrichfind_hp | 0.077 | 0.008 | 1.400 | |
enrichplot | 0.493 | 0.000 | 0.494 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.073 | 0.004 | 5.522 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.000 | 0.002 | |
plotPPI | 0.089 | 0.008 | 0.098 | |
pred_ensembel | 17.698 | 0.407 | 16.939 | |
var_imp | 38.529 | 0.347 | 38.930 | |