| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-01 11:35 -0400 (Fri, 01 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4718 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-01 01:02:23 -0400 (Fri, 01 May 2026) |
| EndedAt: 2026-05-01 01:17:32 -0400 (Fri, 01 May 2026) |
| EllapsedTime: 908.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-01 05:02:24 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 36.562 0.397 36.973
FSmethod 33.715 0.516 34.236
var_imp 33.087 0.493 33.581
pred_ensembel 12.609 0.125 11.430
enrichfindP 0.533 0.038 11.776
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 98.101740
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.144332
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.835812
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.745035
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 114.683729
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.840395
final value 94.466823
converged
Fitting Repeat 2
# weights: 305
initial value 100.025961
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 113.777317
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 111.840753
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.324741
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 102.366509
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 111.518978
iter 10 value 94.223210
iter 20 value 94.212697
final value 94.212644
converged
Fitting Repeat 3
# weights: 507
initial value 103.255945
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.321839
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 100.385901
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 97.498048
iter 10 value 94.489288
iter 20 value 94.488524
iter 30 value 94.349964
iter 40 value 85.472916
iter 50 value 84.565647
iter 60 value 84.022332
iter 70 value 82.980983
iter 80 value 82.451483
iter 90 value 82.425535
final value 82.425432
converged
Fitting Repeat 2
# weights: 103
initial value 99.331892
iter 10 value 94.457280
iter 20 value 85.794872
iter 30 value 84.074240
iter 40 value 83.423845
iter 50 value 82.881282
final value 82.877170
converged
Fitting Repeat 3
# weights: 103
initial value 97.419711
iter 10 value 94.278723
iter 20 value 85.438760
iter 30 value 84.796765
iter 40 value 84.718127
iter 50 value 83.560015
iter 60 value 82.677259
iter 70 value 82.297338
iter 80 value 81.132625
iter 90 value 80.749189
iter 100 value 80.694937
final value 80.694937
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 100.129442
iter 10 value 94.489094
iter 20 value 85.880206
iter 30 value 83.793183
iter 40 value 82.511280
iter 50 value 82.427213
final value 82.425432
converged
Fitting Repeat 5
# weights: 103
initial value 98.745045
iter 10 value 94.643873
iter 20 value 94.341371
iter 30 value 85.182082
iter 40 value 84.200767
iter 50 value 83.666855
iter 60 value 82.939267
iter 70 value 82.877175
final value 82.877172
converged
Fitting Repeat 1
# weights: 305
initial value 104.574889
iter 10 value 94.435913
iter 20 value 91.122055
iter 30 value 90.869836
iter 40 value 90.829857
iter 50 value 90.532360
iter 60 value 85.015524
iter 70 value 82.491790
iter 80 value 81.402552
iter 90 value 80.334101
iter 100 value 79.914716
final value 79.914716
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.260375
iter 10 value 94.471054
iter 20 value 86.992508
iter 30 value 83.938060
iter 40 value 83.453882
iter 50 value 83.186186
iter 60 value 82.375966
iter 70 value 81.142795
iter 80 value 80.881560
iter 90 value 79.719286
iter 100 value 79.526598
final value 79.526598
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.454205
iter 10 value 94.522758
iter 20 value 94.169626
iter 30 value 88.703058
iter 40 value 86.568326
iter 50 value 85.066033
iter 60 value 84.356901
iter 70 value 82.938138
iter 80 value 81.165890
iter 90 value 80.443416
iter 100 value 79.625410
final value 79.625410
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.367136
iter 10 value 94.527837
iter 20 value 93.439401
iter 30 value 91.910428
iter 40 value 91.315645
iter 50 value 90.161797
iter 60 value 88.599275
iter 70 value 85.778620
iter 80 value 84.440195
iter 90 value 83.711176
iter 100 value 83.143922
final value 83.143922
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.276512
iter 10 value 94.632065
iter 20 value 86.943705
iter 30 value 84.187145
iter 40 value 83.459613
iter 50 value 83.305436
iter 60 value 82.661178
iter 70 value 80.992377
iter 80 value 80.229699
iter 90 value 80.099769
iter 100 value 79.763846
final value 79.763846
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.760008
iter 10 value 92.892883
iter 20 value 90.778381
iter 30 value 89.829191
iter 40 value 87.546488
iter 50 value 82.531737
iter 60 value 80.965510
iter 70 value 80.301207
iter 80 value 80.053213
iter 90 value 79.943528
iter 100 value 79.850338
final value 79.850338
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.160716
iter 10 value 94.688560
iter 20 value 84.433878
iter 30 value 82.871148
iter 40 value 80.644381
iter 50 value 79.869533
iter 60 value 79.795286
iter 70 value 79.762722
iter 80 value 79.638832
iter 90 value 79.451222
iter 100 value 79.207260
final value 79.207260
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.824223
iter 10 value 95.491625
iter 20 value 87.093837
iter 30 value 83.766244
iter 40 value 83.082966
iter 50 value 80.433286
iter 60 value 79.329857
iter 70 value 79.193853
iter 80 value 79.065467
iter 90 value 78.945145
iter 100 value 78.905175
final value 78.905175
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.038914
iter 10 value 94.655008
iter 20 value 94.475092
iter 30 value 93.845659
iter 40 value 82.376004
iter 50 value 81.960915
iter 60 value 80.925212
iter 70 value 79.796205
iter 80 value 79.663916
iter 90 value 79.642477
iter 100 value 79.540443
final value 79.540443
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.812705
iter 10 value 96.220624
iter 20 value 85.913060
iter 30 value 82.083282
iter 40 value 81.906355
iter 50 value 81.494816
iter 60 value 81.029531
iter 70 value 80.409185
iter 80 value 79.982757
iter 90 value 79.473260
iter 100 value 79.222645
final value 79.222645
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.869159
final value 94.485775
converged
Fitting Repeat 2
# weights: 103
initial value 96.976485
iter 10 value 94.468701
iter 20 value 94.466984
final value 94.466913
converged
Fitting Repeat 3
# weights: 103
initial value 102.626918
iter 10 value 94.485768
iter 10 value 94.485767
iter 10 value 94.485767
final value 94.485767
converged
Fitting Repeat 4
# weights: 103
initial value 97.102998
final value 94.485811
converged
Fitting Repeat 5
# weights: 103
initial value 95.065620
final value 94.485944
converged
Fitting Repeat 1
# weights: 305
initial value 100.529893
iter 10 value 94.488887
iter 20 value 94.461288
iter 30 value 91.978472
iter 40 value 91.978039
iter 40 value 91.978038
iter 50 value 91.977884
iter 60 value 91.966644
iter 70 value 91.941693
final value 91.941492
converged
Fitting Repeat 2
# weights: 305
initial value 98.958518
iter 10 value 94.471570
iter 20 value 90.277151
iter 30 value 83.463450
iter 40 value 82.823783
iter 50 value 82.322798
final value 82.041586
converged
Fitting Repeat 3
# weights: 305
initial value 96.114703
iter 10 value 91.126667
iter 20 value 91.078585
iter 30 value 90.998089
iter 40 value 82.991033
iter 50 value 81.524073
iter 60 value 81.520781
iter 70 value 81.196456
iter 80 value 80.873611
iter 90 value 80.516654
iter 100 value 80.312814
final value 80.312814
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.648266
iter 10 value 93.882835
iter 20 value 93.584048
iter 30 value 89.159543
iter 40 value 88.773885
iter 50 value 88.765251
iter 60 value 88.764551
iter 70 value 84.925379
iter 80 value 83.799116
iter 90 value 83.392715
iter 100 value 83.375368
final value 83.375368
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.483695
iter 10 value 91.552933
iter 20 value 84.235846
iter 30 value 83.871503
iter 40 value 83.279458
iter 50 value 83.245337
iter 60 value 81.426895
iter 70 value 81.089570
iter 80 value 81.089050
iter 90 value 81.060802
iter 100 value 81.009718
final value 81.009718
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.059242
iter 10 value 94.491937
iter 20 value 94.469724
iter 30 value 86.703636
iter 40 value 86.657064
iter 50 value 86.625185
final value 86.624973
converged
Fitting Repeat 2
# weights: 507
initial value 139.120216
iter 10 value 94.492577
iter 20 value 94.484519
iter 30 value 94.394432
iter 40 value 89.925781
iter 50 value 86.699321
iter 60 value 86.694846
final value 86.694747
converged
Fitting Repeat 3
# weights: 507
initial value 112.014242
iter 10 value 94.492734
iter 20 value 94.421884
iter 30 value 93.402005
iter 40 value 84.596860
iter 50 value 83.002722
iter 60 value 82.784573
iter 70 value 79.946623
iter 80 value 79.421655
iter 90 value 78.991855
iter 100 value 78.384077
final value 78.384077
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.180985
iter 10 value 94.334517
iter 20 value 91.820166
iter 30 value 90.609021
final value 90.608983
converged
Fitting Repeat 5
# weights: 507
initial value 95.984003
iter 10 value 87.046111
iter 20 value 83.783732
iter 30 value 82.174585
iter 40 value 82.163576
iter 50 value 82.162845
iter 60 value 82.024089
iter 70 value 80.493252
iter 80 value 80.488204
iter 90 value 80.484735
iter 100 value 80.484439
final value 80.484439
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.979677
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.138613
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 98.015036
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 97.372053
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 114.076553
final value 93.604520
converged
Fitting Repeat 1
# weights: 305
initial value 94.961340
iter 10 value 93.657386
iter 10 value 93.657386
iter 10 value 93.657386
final value 93.657386
converged
Fitting Repeat 2
# weights: 305
initial value 103.588391
iter 10 value 92.263416
iter 20 value 91.171864
iter 30 value 90.872012
iter 40 value 90.827752
iter 50 value 90.827220
iter 50 value 90.827220
iter 50 value 90.827220
final value 90.827220
converged
Fitting Repeat 3
# weights: 305
initial value 113.017742
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 107.247927
iter 10 value 94.052911
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.048612
final value 94.032967
converged
Fitting Repeat 1
# weights: 507
initial value 102.930561
iter 10 value 93.988117
final value 93.988096
converged
Fitting Repeat 2
# weights: 507
initial value 94.991325
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 101.749590
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 105.206368
final value 93.604520
converged
Fitting Repeat 5
# weights: 507
initial value 96.255700
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 100.515794
iter 10 value 93.822305
iter 20 value 93.699783
iter 30 value 90.622773
iter 40 value 89.663512
iter 50 value 86.846644
iter 60 value 85.828659
iter 70 value 84.104419
iter 80 value 84.041875
iter 90 value 82.796711
iter 100 value 82.473870
final value 82.473870
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.761618
iter 10 value 94.056673
iter 20 value 94.049944
iter 30 value 93.698602
iter 40 value 93.510262
iter 50 value 93.392805
iter 60 value 86.311119
iter 70 value 86.184517
iter 80 value 84.094891
iter 90 value 83.379050
iter 100 value 82.654138
final value 82.654138
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.346216
iter 10 value 94.005874
iter 20 value 86.033248
iter 30 value 85.145935
iter 40 value 84.591040
iter 50 value 83.100807
iter 60 value 82.984564
iter 70 value 82.946074
iter 80 value 82.944842
final value 82.944828
converged
Fitting Repeat 4
# weights: 103
initial value 98.021368
iter 10 value 93.988928
iter 20 value 89.949329
iter 30 value 86.589446
iter 40 value 86.341538
iter 50 value 84.586829
iter 60 value 83.258804
iter 70 value 82.581105
iter 80 value 82.496515
final value 82.491117
converged
Fitting Repeat 5
# weights: 103
initial value 109.925561
iter 10 value 97.192612
iter 20 value 94.060918
iter 30 value 89.693432
iter 40 value 87.378510
iter 50 value 83.577202
iter 60 value 83.220481
iter 70 value 82.877587
iter 80 value 82.769411
iter 90 value 82.767732
iter 90 value 82.767732
iter 90 value 82.767732
final value 82.767732
converged
Fitting Repeat 1
# weights: 305
initial value 105.890061
iter 10 value 94.013635
iter 20 value 93.179989
iter 30 value 89.354610
iter 40 value 88.845364
iter 50 value 83.861889
iter 60 value 82.383403
iter 70 value 81.644459
iter 80 value 79.636737
iter 90 value 78.826323
iter 100 value 78.748634
final value 78.748634
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.437940
iter 10 value 94.054716
iter 20 value 91.495703
iter 30 value 89.896844
iter 40 value 84.671470
iter 50 value 82.270240
iter 60 value 81.886801
iter 70 value 81.363566
iter 80 value 80.260699
iter 90 value 79.746374
iter 100 value 79.372885
final value 79.372885
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 124.436927
iter 10 value 93.962171
iter 20 value 84.947856
iter 30 value 83.228092
iter 40 value 82.613694
iter 50 value 81.415308
iter 60 value 81.144559
iter 70 value 80.705093
iter 80 value 80.661517
iter 90 value 79.445297
iter 100 value 78.861726
final value 78.861726
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.112040
iter 10 value 93.514767
iter 20 value 86.004051
iter 30 value 84.947789
iter 40 value 83.355596
iter 50 value 82.888336
iter 60 value 82.648762
iter 70 value 82.629846
iter 80 value 82.177258
iter 90 value 80.515246
iter 100 value 79.574786
final value 79.574786
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.895277
iter 10 value 94.030265
iter 20 value 93.457294
iter 30 value 89.759891
iter 40 value 87.089654
iter 50 value 82.447069
iter 60 value 80.263851
iter 70 value 79.169186
iter 80 value 79.055087
iter 90 value 78.790428
iter 100 value 78.533848
final value 78.533848
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.095036
iter 10 value 94.152903
iter 20 value 92.715948
iter 30 value 89.381397
iter 40 value 85.213740
iter 50 value 83.441036
iter 60 value 80.114560
iter 70 value 79.349418
iter 80 value 79.115688
iter 90 value 78.857886
iter 100 value 78.619754
final value 78.619754
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.475251
iter 10 value 93.880328
iter 20 value 85.162355
iter 30 value 84.274993
iter 40 value 83.312958
iter 50 value 82.798177
iter 60 value 82.459264
iter 70 value 81.877859
iter 80 value 81.050492
iter 90 value 80.890110
iter 100 value 80.628288
final value 80.628288
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.784363
iter 10 value 94.222822
iter 20 value 85.591365
iter 30 value 84.196246
iter 40 value 81.561970
iter 50 value 79.870340
iter 60 value 79.573025
iter 70 value 79.289150
iter 80 value 79.055425
iter 90 value 78.910512
iter 100 value 78.778467
final value 78.778467
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.634861
iter 10 value 94.080368
iter 20 value 86.901960
iter 30 value 84.069563
iter 40 value 83.787790
iter 50 value 82.654152
iter 60 value 82.515167
iter 70 value 81.406395
iter 80 value 80.275836
iter 90 value 79.662876
iter 100 value 79.304406
final value 79.304406
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.113119
iter 10 value 94.235787
iter 20 value 93.827819
iter 30 value 92.704879
iter 40 value 91.375465
iter 50 value 85.721341
iter 60 value 83.230763
iter 70 value 82.697943
iter 80 value 79.528158
iter 90 value 79.074163
iter 100 value 78.636104
final value 78.636104
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.769013
final value 94.055074
converged
Fitting Repeat 2
# weights: 103
initial value 95.642089
final value 94.054526
converged
Fitting Repeat 3
# weights: 103
initial value 110.986079
iter 10 value 93.356504
iter 20 value 93.326347
iter 30 value 91.280827
iter 40 value 83.977649
iter 50 value 83.977519
iter 60 value 83.976438
final value 83.976312
converged
Fitting Repeat 4
# weights: 103
initial value 116.490830
final value 94.054654
converged
Fitting Repeat 5
# weights: 103
initial value 99.115079
final value 94.054357
converged
Fitting Repeat 1
# weights: 305
initial value 102.839062
iter 10 value 94.057973
iter 20 value 94.025687
iter 30 value 84.584321
iter 40 value 83.976999
final value 83.976424
converged
Fitting Repeat 2
# weights: 305
initial value 106.745391
iter 10 value 94.044296
iter 20 value 91.425115
iter 30 value 91.175814
iter 40 value 91.169683
iter 50 value 91.128092
iter 60 value 91.048527
iter 70 value 91.045656
final value 91.044572
converged
Fitting Repeat 3
# weights: 305
initial value 109.324605
iter 10 value 94.037858
iter 20 value 92.785211
iter 30 value 83.758130
iter 40 value 82.492106
iter 50 value 82.490655
iter 60 value 82.487979
final value 82.487832
converged
Fitting Repeat 4
# weights: 305
initial value 98.251532
iter 10 value 93.993357
iter 20 value 93.988135
iter 30 value 82.998723
iter 40 value 82.740072
iter 50 value 82.739240
iter 60 value 82.163217
iter 70 value 82.160764
iter 80 value 82.156559
iter 90 value 82.155901
final value 82.155417
converged
Fitting Repeat 5
# weights: 305
initial value 100.823054
iter 10 value 89.344562
iter 20 value 82.560069
iter 30 value 82.451196
iter 40 value 82.370260
iter 50 value 82.364873
iter 60 value 82.364012
iter 70 value 82.334758
iter 80 value 82.302142
iter 90 value 81.942617
iter 100 value 81.645280
final value 81.645280
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 94.241861
iter 10 value 94.060020
iter 20 value 93.960857
iter 30 value 89.931793
iter 40 value 89.865933
iter 50 value 89.860917
iter 60 value 89.860768
iter 70 value 88.107882
iter 80 value 83.969021
iter 90 value 83.165967
iter 100 value 83.165082
final value 83.165082
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.356424
iter 10 value 94.041698
iter 20 value 94.004810
iter 30 value 93.524309
iter 40 value 91.502403
iter 50 value 82.534559
iter 60 value 81.819330
final value 81.787192
converged
Fitting Repeat 3
# weights: 507
initial value 106.010115
iter 10 value 94.061359
iter 20 value 94.039013
iter 30 value 93.761837
iter 40 value 88.867802
iter 50 value 84.319876
iter 60 value 82.152015
iter 70 value 81.841532
iter 80 value 81.640169
iter 90 value 81.636938
iter 100 value 80.271899
final value 80.271899
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.296479
iter 10 value 89.939415
iter 20 value 85.957105
iter 30 value 85.868962
final value 85.868388
converged
Fitting Repeat 5
# weights: 507
initial value 102.327277
iter 10 value 94.061324
iter 20 value 94.013647
iter 30 value 87.282035
iter 40 value 82.204980
iter 50 value 81.985491
final value 81.936039
converged
Fitting Repeat 1
# weights: 103
initial value 95.910581
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.417458
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 105.631749
final value 94.484137
converged
Fitting Repeat 4
# weights: 103
initial value 98.644483
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 109.620045
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.013463
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 105.663409
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 99.355476
final value 94.088889
converged
Fitting Repeat 4
# weights: 305
initial value 100.733258
final value 94.291892
converged
Fitting Repeat 5
# weights: 305
initial value 111.186634
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 108.418665
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.015109
iter 10 value 94.182692
final value 94.147059
converged
Fitting Repeat 3
# weights: 507
initial value 102.352888
iter 10 value 94.465275
iter 20 value 94.076840
iter 30 value 94.055847
final value 94.055814
converged
Fitting Repeat 4
# weights: 507
initial value 132.180433
final value 94.291892
converged
Fitting Repeat 5
# weights: 507
initial value 96.946678
final value 94.472272
converged
Fitting Repeat 1
# weights: 103
initial value 108.681421
iter 10 value 94.437228
iter 20 value 87.276619
iter 30 value 86.011537
iter 40 value 85.600934
iter 50 value 85.381548
iter 60 value 85.220572
final value 85.219707
converged
Fitting Repeat 2
# weights: 103
initial value 99.154409
iter 10 value 94.488636
iter 20 value 89.415180
iter 30 value 87.307135
iter 40 value 86.570463
iter 50 value 86.285696
iter 60 value 85.978389
iter 70 value 85.901455
final value 85.901412
converged
Fitting Repeat 3
# weights: 103
initial value 100.764762
iter 10 value 94.489692
iter 20 value 92.867472
iter 30 value 87.546276
iter 40 value 86.277232
iter 50 value 86.160003
iter 60 value 85.141662
iter 70 value 85.050322
iter 80 value 85.045523
iter 90 value 85.033139
final value 85.032718
converged
Fitting Repeat 4
# weights: 103
initial value 96.778338
iter 10 value 94.586652
iter 20 value 94.485032
iter 30 value 93.993829
iter 40 value 91.136636
iter 50 value 89.376240
iter 60 value 86.979216
iter 70 value 85.810032
iter 80 value 84.717998
iter 90 value 84.272175
iter 100 value 83.819684
final value 83.819684
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.502745
iter 10 value 94.501787
iter 20 value 93.014248
iter 30 value 87.090139
iter 40 value 86.125009
iter 50 value 85.840842
iter 60 value 85.351053
iter 70 value 84.534629
iter 80 value 84.062589
iter 90 value 84.059020
iter 100 value 83.917774
final value 83.917774
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.086666
iter 10 value 94.380826
iter 20 value 88.984758
iter 30 value 87.260979
iter 40 value 86.653288
iter 50 value 86.613532
iter 60 value 85.473034
iter 70 value 85.324621
iter 80 value 85.065598
iter 90 value 84.543307
iter 100 value 82.843321
final value 82.843321
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.130723
iter 10 value 94.818489
iter 20 value 94.446694
iter 30 value 91.823280
iter 40 value 87.937485
iter 50 value 86.058327
iter 60 value 85.923550
iter 70 value 84.837223
iter 80 value 83.554261
iter 90 value 82.648489
iter 100 value 82.457999
final value 82.457999
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 115.562289
iter 10 value 94.622656
iter 20 value 90.780393
iter 30 value 88.633696
iter 40 value 85.687842
iter 50 value 84.289692
iter 60 value 83.429815
iter 70 value 83.346072
iter 80 value 83.202667
iter 90 value 83.067098
iter 100 value 82.914986
final value 82.914986
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 116.986922
iter 10 value 93.952964
iter 20 value 89.321581
iter 30 value 85.684112
iter 40 value 83.794084
iter 50 value 83.043045
iter 60 value 82.927604
iter 70 value 82.799181
iter 80 value 82.643241
iter 90 value 82.566667
iter 100 value 82.560369
final value 82.560369
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 118.672078
iter 10 value 96.421681
iter 20 value 89.587067
iter 30 value 86.369251
iter 40 value 86.222725
iter 50 value 86.111728
iter 60 value 85.891010
iter 70 value 85.351202
iter 80 value 85.071318
iter 90 value 84.829802
iter 100 value 83.771551
final value 83.771551
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.013216
iter 10 value 95.841714
iter 20 value 89.455827
iter 30 value 87.957694
iter 40 value 87.745858
iter 50 value 86.170620
iter 60 value 85.635554
iter 70 value 85.212847
iter 80 value 84.794096
iter 90 value 83.380213
iter 100 value 82.625578
final value 82.625578
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.976806
iter 10 value 94.659581
iter 20 value 94.244889
iter 30 value 94.027317
iter 40 value 93.226481
iter 50 value 91.008255
iter 60 value 86.220086
iter 70 value 84.562760
iter 80 value 83.484912
iter 90 value 83.412227
iter 100 value 83.028512
final value 83.028512
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 146.074121
iter 10 value 94.013298
iter 20 value 87.477051
iter 30 value 86.644139
iter 40 value 85.879368
iter 50 value 84.971016
iter 60 value 83.757002
iter 70 value 83.473411
iter 80 value 83.431592
iter 90 value 83.238362
iter 100 value 82.701452
final value 82.701452
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.921624
iter 10 value 95.059556
iter 20 value 93.785892
iter 30 value 87.276829
iter 40 value 86.289680
iter 50 value 85.068782
iter 60 value 84.283843
iter 70 value 84.059026
iter 80 value 83.410744
iter 90 value 82.499340
iter 100 value 82.152008
final value 82.152008
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.563259
iter 10 value 94.341080
iter 20 value 90.417849
iter 30 value 89.069108
iter 40 value 86.186473
iter 50 value 83.443361
iter 60 value 83.014427
iter 70 value 82.151509
iter 80 value 81.873841
iter 90 value 81.731173
iter 100 value 81.584323
final value 81.584323
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.993188
final value 94.485877
converged
Fitting Repeat 2
# weights: 103
initial value 97.777053
final value 94.485870
converged
Fitting Repeat 3
# weights: 103
initial value 102.559389
final value 94.293455
converged
Fitting Repeat 4
# weights: 103
initial value 105.343437
final value 94.485777
converged
Fitting Repeat 5
# weights: 103
initial value 97.372141
final value 94.485961
converged
Fitting Repeat 1
# weights: 305
initial value 108.823657
iter 10 value 94.440274
iter 20 value 93.469767
iter 30 value 92.474097
iter 40 value 92.433560
iter 50 value 92.352595
iter 60 value 92.347181
iter 70 value 92.309326
iter 80 value 92.307479
iter 90 value 90.176758
iter 100 value 86.935853
final value 86.935853
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.930081
iter 10 value 94.488300
iter 20 value 89.448034
iter 30 value 88.385897
iter 40 value 88.328449
iter 50 value 88.327353
iter 60 value 87.850752
iter 70 value 85.216186
iter 80 value 83.375694
iter 90 value 83.209107
iter 100 value 82.550456
final value 82.550456
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.937500
iter 10 value 94.488979
iter 20 value 88.656994
iter 30 value 86.940904
iter 40 value 86.938855
iter 50 value 86.906611
iter 60 value 86.904444
iter 70 value 86.902504
final value 86.901904
converged
Fitting Repeat 4
# weights: 305
initial value 99.278978
iter 10 value 94.488579
iter 20 value 91.411943
iter 30 value 88.338219
iter 40 value 88.331199
iter 50 value 88.327603
iter 60 value 88.327128
iter 70 value 87.711177
iter 80 value 86.690696
iter 90 value 86.649924
iter 100 value 86.398209
final value 86.398209
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 96.255817
iter 10 value 94.486533
iter 20 value 93.253204
iter 30 value 93.148609
iter 40 value 89.294454
iter 50 value 86.989950
iter 50 value 86.989950
iter 50 value 86.989950
final value 86.989950
converged
Fitting Repeat 1
# weights: 507
initial value 96.865037
iter 10 value 94.451568
iter 20 value 94.448547
iter 30 value 86.355011
iter 40 value 85.630103
iter 50 value 85.548957
iter 60 value 82.720128
iter 70 value 82.561994
iter 80 value 81.867606
iter 90 value 81.706805
iter 100 value 81.705496
final value 81.705496
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.981295
iter 10 value 94.299851
iter 20 value 91.876047
iter 30 value 90.955873
iter 40 value 90.921735
iter 50 value 85.669458
iter 60 value 84.651581
iter 70 value 83.976960
iter 80 value 83.723871
iter 90 value 83.723609
iter 100 value 83.722500
final value 83.722500
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.792156
iter 10 value 94.491966
final value 94.484665
converged
Fitting Repeat 4
# weights: 507
initial value 97.271407
iter 10 value 94.488601
iter 20 value 94.445214
iter 30 value 92.369105
iter 40 value 90.942586
iter 50 value 90.937377
iter 60 value 90.928190
iter 70 value 90.870517
iter 80 value 90.686734
iter 90 value 88.349093
iter 100 value 87.557492
final value 87.557492
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.055442
iter 10 value 94.300322
iter 20 value 93.809228
iter 30 value 91.360457
iter 40 value 86.259771
iter 50 value 85.261209
iter 60 value 85.102414
iter 70 value 84.952971
iter 80 value 84.863161
iter 90 value 84.862979
iter 100 value 84.862857
final value 84.862857
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.630015
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.406673
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.401547
final value 92.892737
converged
Fitting Repeat 4
# weights: 103
initial value 95.181571
iter 10 value 92.945357
iter 10 value 92.945356
iter 10 value 92.945356
final value 92.945356
converged
Fitting Repeat 5
# weights: 103
initial value 104.213464
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 124.672238
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.658591
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 100.960396
iter 10 value 93.822984
iter 20 value 93.108754
iter 30 value 92.856799
iter 40 value 92.730408
iter 50 value 92.726194
final value 92.726191
converged
Fitting Repeat 4
# weights: 305
initial value 106.826969
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.947690
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 96.770302
iter 10 value 93.735442
final value 93.735438
converged
Fitting Repeat 2
# weights: 507
initial value 110.030868
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 104.495853
iter 10 value 92.945358
final value 92.945355
converged
Fitting Repeat 4
# weights: 507
initial value 109.698360
iter 10 value 94.055652
iter 20 value 93.496115
final value 93.377029
converged
Fitting Repeat 5
# weights: 507
initial value 96.914539
final value 92.945355
converged
Fitting Repeat 1
# weights: 103
initial value 102.824968
iter 10 value 92.956266
iter 20 value 87.538504
iter 30 value 85.476044
iter 40 value 84.707335
iter 50 value 84.469325
iter 60 value 84.332887
iter 70 value 84.238848
final value 84.238845
converged
Fitting Repeat 2
# weights: 103
initial value 106.429045
iter 10 value 94.019441
iter 10 value 94.019440
iter 20 value 88.351132
iter 30 value 85.734953
iter 40 value 82.900591
iter 50 value 81.879951
iter 60 value 81.555595
iter 70 value 81.248693
iter 80 value 80.759638
iter 90 value 80.640578
iter 100 value 80.526036
final value 80.526036
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.995453
iter 10 value 92.012826
iter 20 value 83.731703
iter 30 value 83.285215
iter 40 value 83.020594
iter 50 value 82.999105
final value 82.998556
converged
Fitting Repeat 4
# weights: 103
initial value 97.685380
iter 10 value 93.478621
iter 20 value 89.811001
iter 30 value 83.620877
iter 40 value 83.444348
iter 50 value 82.217798
iter 60 value 81.219927
iter 70 value 80.862912
iter 80 value 80.571946
iter 90 value 80.517470
iter 100 value 80.499954
final value 80.499954
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.141841
iter 10 value 93.668912
iter 20 value 93.080475
iter 30 value 93.020619
iter 40 value 92.625643
iter 50 value 84.025661
iter 60 value 82.196067
iter 70 value 81.544148
iter 80 value 81.494467
iter 90 value 81.312212
iter 100 value 81.112149
final value 81.112149
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 106.680866
iter 10 value 93.997951
iter 20 value 93.508138
iter 30 value 90.055908
iter 40 value 82.973878
iter 50 value 81.735354
iter 60 value 79.775699
iter 70 value 79.261691
iter 80 value 79.191465
iter 90 value 78.801452
iter 100 value 78.688446
final value 78.688446
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.224653
iter 10 value 93.797681
iter 20 value 86.653270
iter 30 value 85.853886
iter 40 value 84.098028
iter 50 value 83.378583
iter 60 value 83.229503
iter 70 value 82.552952
iter 80 value 80.594199
iter 90 value 79.990257
iter 100 value 79.741454
final value 79.741454
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.890040
iter 10 value 93.616304
iter 20 value 93.270171
iter 30 value 93.126691
iter 40 value 92.514799
iter 50 value 90.573251
iter 60 value 90.135584
iter 70 value 89.866400
iter 80 value 89.696921
iter 90 value 87.261901
iter 100 value 86.173650
final value 86.173650
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.293987
iter 10 value 92.473097
iter 20 value 88.076501
iter 30 value 82.586740
iter 40 value 82.017629
iter 50 value 81.524014
iter 60 value 81.306050
iter 70 value 80.726438
iter 80 value 79.704574
iter 90 value 79.027643
iter 100 value 78.716712
final value 78.716712
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.084716
iter 10 value 94.164636
iter 20 value 94.018156
iter 30 value 93.393616
iter 40 value 92.783565
iter 50 value 88.787742
iter 60 value 83.709484
iter 70 value 83.043548
iter 80 value 82.486083
iter 90 value 81.820974
iter 100 value 81.441922
final value 81.441922
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.913827
iter 10 value 96.756321
iter 20 value 94.159250
iter 30 value 93.911082
iter 40 value 87.304317
iter 50 value 84.636283
iter 60 value 82.433768
iter 70 value 81.198725
iter 80 value 80.473981
iter 90 value 79.635756
iter 100 value 79.378475
final value 79.378475
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 133.723263
iter 10 value 94.577453
iter 20 value 93.423770
iter 30 value 92.907453
iter 40 value 91.856721
iter 50 value 86.811925
iter 60 value 85.256906
iter 70 value 82.064385
iter 80 value 80.317690
iter 90 value 79.821590
iter 100 value 79.707240
final value 79.707240
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 136.468564
iter 10 value 93.995473
iter 20 value 91.239513
iter 30 value 86.034924
iter 40 value 83.661457
iter 50 value 82.578249
iter 60 value 81.495595
iter 70 value 81.047611
iter 80 value 80.083445
iter 90 value 79.527623
iter 100 value 79.450344
final value 79.450344
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.691237
iter 10 value 94.389593
iter 20 value 93.631964
iter 30 value 89.816910
iter 40 value 88.966164
iter 50 value 87.730333
iter 60 value 85.529446
iter 70 value 82.654487
iter 80 value 81.487420
iter 90 value 80.224683
iter 100 value 79.327564
final value 79.327564
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.885988
iter 10 value 94.557333
iter 20 value 86.315232
iter 30 value 84.742184
iter 40 value 80.787965
iter 50 value 80.108448
iter 60 value 80.022499
iter 70 value 79.500586
iter 80 value 79.009448
iter 90 value 78.626415
iter 100 value 78.369833
final value 78.369833
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.571900
final value 93.227771
converged
Fitting Repeat 2
# weights: 103
initial value 98.103173
final value 94.054486
converged
Fitting Repeat 3
# weights: 103
initial value 96.739201
final value 94.054328
converged
Fitting Repeat 4
# weights: 103
initial value 98.060430
final value 93.228033
converged
Fitting Repeat 5
# weights: 103
initial value 97.300755
final value 94.054547
converged
Fitting Repeat 1
# weights: 305
initial value 98.010443
iter 10 value 94.057018
iter 20 value 93.592194
iter 30 value 84.891270
iter 40 value 84.400501
iter 50 value 84.201709
final value 84.199113
converged
Fitting Repeat 2
# weights: 305
initial value 99.199477
iter 10 value 94.057746
iter 20 value 93.862834
iter 30 value 88.911444
iter 40 value 88.836488
iter 50 value 88.011431
iter 60 value 83.949229
iter 70 value 83.141933
iter 80 value 83.129724
iter 90 value 83.128660
final value 83.128553
converged
Fitting Repeat 3
# weights: 305
initial value 114.078805
iter 10 value 94.057328
iter 20 value 94.031096
iter 30 value 92.481252
iter 40 value 82.927264
iter 50 value 82.080086
iter 60 value 82.004342
iter 70 value 81.957844
iter 80 value 81.427378
iter 90 value 81.365817
iter 100 value 81.351909
final value 81.351909
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.829373
iter 10 value 93.739872
iter 20 value 93.052606
iter 30 value 83.413180
iter 40 value 81.619703
iter 50 value 80.574472
final value 80.557600
converged
Fitting Repeat 5
# weights: 305
initial value 103.132762
iter 10 value 94.057283
iter 20 value 93.866456
iter 30 value 84.915930
iter 40 value 84.841650
iter 50 value 84.841377
iter 60 value 84.383263
iter 70 value 84.382435
iter 80 value 84.011061
iter 90 value 83.554692
iter 100 value 82.633055
final value 82.633055
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.132363
iter 10 value 92.937947
iter 20 value 92.734728
iter 30 value 92.495813
iter 40 value 88.609428
iter 50 value 88.516921
iter 60 value 87.791878
iter 70 value 87.761870
iter 80 value 87.761293
iter 90 value 86.926775
iter 100 value 86.742775
final value 86.742775
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.135218
iter 10 value 90.900998
iter 20 value 90.667714
iter 30 value 87.697820
iter 40 value 86.753571
iter 50 value 86.749548
iter 60 value 86.748212
iter 70 value 86.547147
iter 80 value 83.413474
iter 90 value 82.490780
iter 100 value 80.374176
final value 80.374176
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.483207
iter 10 value 94.060363
iter 20 value 93.875811
iter 30 value 86.977057
iter 40 value 82.822516
iter 50 value 82.529256
iter 60 value 82.207415
iter 70 value 81.600373
iter 80 value 81.595908
iter 90 value 81.443486
iter 100 value 80.700367
final value 80.700367
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 94.301830
iter 10 value 92.475430
iter 20 value 92.461905
iter 30 value 92.457813
final value 92.456381
converged
Fitting Repeat 5
# weights: 507
initial value 99.775518
iter 10 value 92.865974
iter 20 value 92.864240
iter 30 value 92.748954
iter 40 value 92.728908
iter 50 value 92.681184
iter 60 value 85.405590
iter 70 value 84.635635
iter 80 value 84.516749
iter 90 value 84.473035
final value 84.472824
converged
Fitting Repeat 1
# weights: 103
initial value 104.709328
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.366362
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.374067
final value 94.026542
converged
Fitting Repeat 4
# weights: 103
initial value 103.323030
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.329840
iter 10 value 87.871349
iter 20 value 81.835972
iter 30 value 81.686682
iter 40 value 81.653783
iter 50 value 81.652702
final value 81.652697
converged
Fitting Repeat 1
# weights: 305
initial value 99.473338
final value 94.026542
converged
Fitting Repeat 2
# weights: 305
initial value 108.576366
final value 94.467391
converged
Fitting Repeat 3
# weights: 305
initial value 99.778565
final value 94.026542
converged
Fitting Repeat 4
# weights: 305
initial value 112.695576
final value 94.484209
converged
Fitting Repeat 5
# weights: 305
initial value 99.731043
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.620646
final value 94.484137
converged
Fitting Repeat 2
# weights: 507
initial value 109.451984
iter 10 value 90.338874
iter 20 value 86.441912
final value 86.439002
converged
Fitting Repeat 3
# weights: 507
initial value 103.926947
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 112.314634
iter 10 value 94.026542
iter 10 value 94.026542
iter 10 value 94.026542
final value 94.026542
converged
Fitting Repeat 5
# weights: 507
initial value 122.835841
iter 10 value 94.433551
final value 94.433544
converged
Fitting Repeat 1
# weights: 103
initial value 99.645878
iter 10 value 94.488059
iter 20 value 94.131414
iter 30 value 94.127450
iter 40 value 94.126744
iter 50 value 93.446994
iter 60 value 88.949663
iter 70 value 87.584201
iter 80 value 85.261040
iter 90 value 83.793562
iter 100 value 82.873046
final value 82.873046
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 107.202135
iter 10 value 94.329861
iter 20 value 85.561739
iter 30 value 84.715625
iter 40 value 83.628937
iter 50 value 82.923710
iter 60 value 82.656627
iter 70 value 82.511081
iter 80 value 82.464156
final value 82.455053
converged
Fitting Repeat 3
# weights: 103
initial value 98.305707
iter 10 value 94.494715
iter 20 value 94.145344
iter 30 value 94.118184
iter 40 value 93.776075
iter 50 value 93.755813
iter 60 value 93.749882
iter 70 value 93.749235
iter 80 value 93.690530
iter 90 value 90.350276
iter 100 value 88.172518
final value 88.172518
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.881824
iter 10 value 94.482043
iter 20 value 91.105695
iter 30 value 87.117720
iter 40 value 85.525465
iter 50 value 84.766667
iter 60 value 84.449916
iter 70 value 82.912917
iter 80 value 82.192910
iter 90 value 82.022757
final value 82.017287
converged
Fitting Repeat 5
# weights: 103
initial value 120.370067
iter 10 value 94.218592
iter 20 value 93.656477
iter 30 value 86.029082
iter 40 value 84.953467
iter 50 value 84.624652
iter 60 value 84.293836
iter 70 value 84.274110
final value 84.274076
converged
Fitting Repeat 1
# weights: 305
initial value 105.276791
iter 10 value 94.146270
iter 20 value 93.721997
iter 30 value 93.011347
iter 40 value 88.800007
iter 50 value 86.108235
iter 60 value 85.049182
iter 70 value 83.881364
iter 80 value 83.747560
iter 90 value 83.113744
iter 100 value 82.341832
final value 82.341832
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.973413
iter 10 value 93.748471
iter 20 value 90.161738
iter 30 value 89.606604
iter 40 value 89.481373
iter 50 value 85.033251
iter 60 value 83.343745
iter 70 value 82.816022
iter 80 value 82.508028
iter 90 value 82.335517
iter 100 value 82.311142
final value 82.311142
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.244569
iter 10 value 94.502238
iter 20 value 93.159045
iter 30 value 86.042882
iter 40 value 84.859642
iter 50 value 84.458982
iter 60 value 84.027795
iter 70 value 83.909240
iter 80 value 83.473943
iter 90 value 82.364567
iter 100 value 81.890710
final value 81.890710
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.979931
iter 10 value 94.419122
iter 20 value 93.928413
iter 30 value 93.629107
iter 40 value 87.209433
iter 50 value 86.478134
iter 60 value 85.011573
iter 70 value 83.737432
iter 80 value 83.468351
iter 90 value 83.393411
iter 100 value 83.286886
final value 83.286886
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.077094
iter 10 value 94.090586
iter 20 value 88.438694
iter 30 value 84.326374
iter 40 value 83.623999
iter 50 value 83.005823
iter 60 value 82.320963
iter 70 value 82.049475
iter 80 value 81.652938
iter 90 value 81.439657
iter 100 value 81.272427
final value 81.272427
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.816743
iter 10 value 90.023670
iter 20 value 86.506535
iter 30 value 85.010996
iter 40 value 82.504406
iter 50 value 81.844557
iter 60 value 81.376510
iter 70 value 81.048911
iter 80 value 80.961489
iter 90 value 80.932031
iter 100 value 80.821500
final value 80.821500
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.404476
iter 10 value 95.071700
iter 20 value 88.925301
iter 30 value 88.098850
iter 40 value 85.440704
iter 50 value 83.316823
iter 60 value 82.768114
iter 70 value 82.648438
iter 80 value 82.474814
iter 90 value 81.873242
iter 100 value 81.598884
final value 81.598884
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.328456
iter 10 value 95.997748
iter 20 value 93.912313
iter 30 value 90.796325
iter 40 value 88.468785
iter 50 value 85.832350
iter 60 value 85.469581
iter 70 value 84.016099
iter 80 value 83.313884
iter 90 value 82.072284
iter 100 value 81.450408
final value 81.450408
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.416630
iter 10 value 98.446594
iter 20 value 93.765851
iter 30 value 90.735216
iter 40 value 86.776852
iter 50 value 86.390876
iter 60 value 86.255786
iter 70 value 86.157105
iter 80 value 85.626504
iter 90 value 83.901093
iter 100 value 83.310116
final value 83.310116
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.688334
iter 10 value 94.503964
iter 20 value 93.735893
iter 30 value 92.680336
iter 40 value 91.597022
iter 50 value 90.953767
iter 60 value 90.519901
iter 70 value 89.682667
iter 80 value 84.878737
iter 90 value 84.030282
iter 100 value 82.875522
final value 82.875522
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.658552
iter 10 value 94.485913
iter 20 value 94.369602
iter 30 value 92.162883
iter 40 value 91.990712
iter 50 value 91.987965
final value 91.987964
converged
Fitting Repeat 2
# weights: 103
initial value 106.881034
final value 94.028606
converged
Fitting Repeat 3
# weights: 103
initial value 95.590945
final value 94.485867
converged
Fitting Repeat 4
# weights: 103
initial value 102.141755
final value 94.486028
converged
Fitting Repeat 5
# weights: 103
initial value 98.546195
final value 94.485879
converged
Fitting Repeat 1
# weights: 305
initial value 98.289374
iter 10 value 93.664888
iter 20 value 93.646169
iter 30 value 91.018918
iter 40 value 82.731149
iter 50 value 82.692392
iter 60 value 82.692132
final value 82.692044
converged
Fitting Repeat 2
# weights: 305
initial value 103.137665
iter 10 value 94.492879
iter 20 value 87.289602
iter 30 value 84.728952
iter 40 value 84.728624
iter 50 value 84.722865
iter 60 value 83.978419
iter 70 value 83.726289
iter 80 value 82.095874
iter 90 value 81.286509
iter 100 value 80.912282
final value 80.912282
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.686084
iter 10 value 93.749145
iter 20 value 93.692953
iter 30 value 93.627944
iter 40 value 93.624266
final value 93.624177
converged
Fitting Repeat 4
# weights: 305
initial value 97.108918
iter 10 value 93.022602
iter 20 value 87.254032
iter 30 value 83.969027
iter 40 value 81.795939
iter 50 value 81.746375
iter 60 value 81.722362
iter 70 value 81.579027
iter 80 value 80.582115
iter 90 value 80.452196
iter 100 value 80.447012
final value 80.447012
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.466345
iter 10 value 94.488162
iter 20 value 93.734849
iter 30 value 93.581335
final value 93.576262
converged
Fitting Repeat 1
# weights: 507
initial value 97.605353
iter 10 value 94.492021
iter 20 value 94.471412
final value 94.026752
converged
Fitting Repeat 2
# weights: 507
initial value 125.044721
iter 10 value 93.637661
iter 20 value 93.629942
iter 30 value 93.577815
iter 40 value 93.577515
iter 50 value 93.509849
iter 60 value 93.508521
iter 70 value 85.965774
iter 80 value 85.034391
iter 90 value 85.017757
iter 100 value 85.017398
final value 85.017398
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.445044
iter 10 value 94.034921
iter 20 value 93.676815
iter 30 value 86.138263
iter 40 value 85.442701
iter 50 value 84.013928
iter 60 value 83.868732
iter 70 value 83.867276
iter 70 value 83.867275
iter 70 value 83.867275
final value 83.867275
converged
Fitting Repeat 4
# weights: 507
initial value 95.817305
iter 10 value 93.110270
iter 20 value 91.247331
iter 30 value 90.150949
iter 40 value 84.386802
iter 50 value 84.253338
final value 84.252280
converged
Fitting Repeat 5
# weights: 507
initial value 99.701419
iter 10 value 94.035054
iter 20 value 94.028497
final value 94.027169
converged
Fitting Repeat 1
# weights: 305
initial value 143.613293
iter 10 value 118.097980
iter 20 value 114.234670
iter 30 value 109.736891
iter 40 value 106.094813
iter 50 value 105.394926
iter 60 value 105.372985
iter 70 value 105.253499
iter 80 value 105.009682
iter 90 value 104.273965
iter 100 value 102.551249
final value 102.551249
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 130.301740
iter 10 value 112.721505
iter 20 value 106.819515
iter 30 value 105.454891
iter 40 value 103.769362
iter 50 value 103.711089
iter 60 value 103.404076
iter 70 value 103.193132
iter 80 value 102.623536
iter 90 value 101.554366
iter 100 value 101.351535
final value 101.351535
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 136.506180
iter 10 value 117.683028
iter 20 value 112.366676
iter 30 value 110.498098
iter 40 value 108.441610
iter 50 value 106.071129
iter 60 value 103.803585
iter 70 value 101.924800
iter 80 value 101.040446
iter 90 value 100.794499
iter 100 value 100.734046
final value 100.734046
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 126.886718
iter 10 value 118.277846
iter 20 value 115.453672
iter 30 value 109.703190
iter 40 value 106.330485
iter 50 value 105.843796
iter 60 value 105.604599
iter 70 value 105.272219
iter 80 value 104.812364
iter 90 value 102.533749
iter 100 value 102.359516
final value 102.359516
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 130.453099
iter 10 value 117.638297
iter 20 value 113.393412
iter 30 value 109.139407
iter 40 value 106.625617
iter 50 value 104.587026
iter 60 value 103.322264
iter 70 value 103.085065
iter 80 value 102.714778
iter 90 value 102.525031
iter 100 value 102.387680
final value 102.387680
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri May 1 01:07:38 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
39.729 1.182 89.653
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.715 | 0.516 | 34.236 | |
| FreqInteractors | 0.428 | 0.024 | 0.451 | |
| calculateAAC | 0.034 | 0.000 | 0.033 | |
| calculateAutocor | 0.273 | 0.016 | 0.289 | |
| calculateCTDC | 0.082 | 0.000 | 0.082 | |
| calculateCTDD | 0.473 | 0.001 | 0.474 | |
| calculateCTDT | 0.129 | 0.001 | 0.130 | |
| calculateCTriad | 0.386 | 0.007 | 0.394 | |
| calculateDC | 0.083 | 0.006 | 0.090 | |
| calculateF | 0.296 | 0.001 | 0.298 | |
| calculateKSAAP | 0.090 | 0.008 | 0.098 | |
| calculateQD_Sm | 1.814 | 0.022 | 1.836 | |
| calculateTC | 1.454 | 0.161 | 1.615 | |
| calculateTC_Sm | 0.269 | 0.004 | 0.273 | |
| corr_plot | 36.562 | 0.397 | 36.973 | |
| enrichfindP | 0.533 | 0.038 | 11.776 | |
| enrichfind_hp | 0.079 | 0.001 | 1.918 | |
| enrichplot | 0.487 | 0.001 | 0.487 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.470 | 0.012 | 3.454 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.001 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.000 | 0.002 | |
| plotPPI | 0.076 | 0.002 | 0.077 | |
| pred_ensembel | 12.609 | 0.125 | 11.430 | |
| var_imp | 33.087 | 0.493 | 33.581 | |