| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-21 11:32 -0400 (Thu, 21 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4995 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-21 01:04:54 -0400 (Thu, 21 May 2026) |
| EndedAt: 2026-05-21 01:20:19 -0400 (Thu, 21 May 2026) |
| EllapsedTime: 924.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-21 05:04:55 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 33.959 0.548 34.608
corr_plot 33.983 0.474 34.521
var_imp 33.079 0.496 33.583
pred_ensembel 12.739 0.151 11.563
enrichfindP 0.544 0.043 11.299
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 100.652408
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.122525
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.630894
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.222254
final value 94.275362
converged
Fitting Repeat 5
# weights: 103
initial value 94.940365
final value 94.275362
converged
Fitting Repeat 1
# weights: 305
initial value 96.978525
iter 10 value 89.475270
iter 20 value 88.899616
iter 30 value 88.899103
final value 88.899102
converged
Fitting Repeat 2
# weights: 305
initial value 104.437244
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 101.576980
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 120.438362
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.095603
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 100.041231
iter 10 value 92.692946
iter 20 value 86.285826
final value 86.144322
converged
Fitting Repeat 2
# weights: 507
initial value 98.645098
final value 93.903448
converged
Fitting Repeat 3
# weights: 507
initial value 116.941459
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 110.271039
iter 10 value 89.857454
iter 20 value 82.914004
final value 82.502128
converged
Fitting Repeat 5
# weights: 507
initial value 105.278349
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 106.725015
iter 10 value 94.367004
iter 20 value 89.741968
iter 30 value 87.744651
iter 40 value 84.895783
iter 50 value 84.484644
iter 60 value 82.637010
iter 70 value 82.131687
iter 80 value 81.547450
iter 90 value 81.474703
iter 100 value 81.344376
final value 81.344376
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.027602
iter 10 value 94.468652
iter 20 value 90.785601
iter 30 value 90.101562
iter 40 value 87.679504
iter 50 value 87.023731
iter 60 value 84.348388
iter 70 value 84.217812
iter 80 value 83.345884
iter 90 value 83.054560
iter 100 value 82.945756
final value 82.945756
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.828704
iter 10 value 94.335089
iter 20 value 86.356492
iter 30 value 84.128940
iter 40 value 83.793798
iter 50 value 83.709483
iter 60 value 83.702286
iter 70 value 83.701108
final value 83.701107
converged
Fitting Repeat 4
# weights: 103
initial value 109.988192
iter 10 value 94.407380
iter 20 value 87.344848
iter 30 value 86.988177
iter 40 value 84.370622
iter 50 value 83.341038
iter 60 value 83.081320
iter 70 value 82.930847
iter 80 value 82.930347
final value 82.930345
converged
Fitting Repeat 5
# weights: 103
initial value 102.182113
iter 10 value 94.995892
iter 20 value 94.485466
iter 30 value 94.035952
iter 40 value 84.479232
iter 50 value 83.468421
iter 60 value 83.204080
iter 70 value 83.029190
iter 80 value 82.931279
iter 90 value 82.930616
final value 82.930346
converged
Fitting Repeat 1
# weights: 305
initial value 108.282563
iter 10 value 94.775734
iter 20 value 94.361115
iter 30 value 86.932949
iter 40 value 84.870242
iter 50 value 83.801798
iter 60 value 83.380254
iter 70 value 82.833103
iter 80 value 82.689783
iter 90 value 82.638917
iter 100 value 82.500143
final value 82.500143
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 112.745032
iter 10 value 94.198225
iter 20 value 85.342474
iter 30 value 83.780889
iter 40 value 82.807757
iter 50 value 82.209646
iter 60 value 81.155277
iter 70 value 80.546198
iter 80 value 80.206804
iter 90 value 80.082515
iter 100 value 79.955596
final value 79.955596
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.326706
iter 10 value 94.475033
iter 20 value 93.105330
iter 30 value 84.339387
iter 40 value 83.239096
iter 50 value 82.092883
iter 60 value 80.993016
iter 70 value 80.479665
iter 80 value 79.986154
iter 90 value 79.922077
iter 100 value 79.841959
final value 79.841959
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.397481
iter 10 value 94.170962
iter 20 value 88.776889
iter 30 value 84.260246
iter 40 value 82.002769
iter 50 value 80.886258
iter 60 value 80.614388
iter 70 value 80.158397
iter 80 value 80.031001
iter 90 value 79.975172
iter 100 value 79.884761
final value 79.884761
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.329610
iter 10 value 94.375145
iter 20 value 87.057242
iter 30 value 83.732513
iter 40 value 82.250573
iter 50 value 80.905604
iter 60 value 80.787306
iter 70 value 80.682368
iter 80 value 80.502278
iter 90 value 80.278464
iter 100 value 80.147211
final value 80.147211
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.107968
iter 10 value 94.516902
iter 20 value 85.110007
iter 30 value 82.918291
iter 40 value 81.666389
iter 50 value 80.474245
iter 60 value 80.231507
iter 70 value 80.215162
iter 80 value 80.000683
iter 90 value 79.832129
iter 100 value 79.736792
final value 79.736792
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.182901
iter 10 value 94.468530
iter 20 value 85.327372
iter 30 value 84.042036
iter 40 value 83.929523
iter 50 value 83.559022
iter 60 value 82.913659
iter 70 value 82.618089
iter 80 value 82.555101
iter 90 value 82.213106
iter 100 value 81.211346
final value 81.211346
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.677071
iter 10 value 97.542463
iter 20 value 92.979831
iter 30 value 85.841664
iter 40 value 82.908378
iter 50 value 82.202304
iter 60 value 82.046524
iter 70 value 81.298151
iter 80 value 80.429131
iter 90 value 80.209572
iter 100 value 80.127966
final value 80.127966
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.258973
iter 10 value 91.231482
iter 20 value 85.408359
iter 30 value 82.909836
iter 40 value 81.702739
iter 50 value 80.875980
iter 60 value 80.350396
iter 70 value 80.134151
iter 80 value 80.046270
iter 90 value 79.742541
iter 100 value 79.586387
final value 79.586387
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.464867
iter 10 value 94.463574
iter 20 value 92.817969
iter 30 value 89.433779
iter 40 value 83.963184
iter 50 value 83.666421
iter 60 value 83.366327
iter 70 value 82.560443
iter 80 value 81.038554
iter 90 value 80.604882
iter 100 value 80.086451
final value 80.086451
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.770822
final value 94.485741
converged
Fitting Repeat 2
# weights: 103
initial value 103.053092
final value 94.485791
converged
Fitting Repeat 3
# weights: 103
initial value 102.443741
iter 10 value 94.485184
iter 20 value 94.468259
iter 30 value 94.299370
final value 94.276500
converged
Fitting Repeat 4
# weights: 103
initial value 99.519014
iter 10 value 94.485706
final value 94.484216
converged
Fitting Repeat 5
# weights: 103
initial value 95.319669
final value 94.485683
converged
Fitting Repeat 1
# weights: 305
initial value 125.349720
iter 10 value 94.488829
iter 20 value 94.468325
iter 30 value 94.057530
iter 40 value 93.672618
iter 50 value 86.367903
iter 60 value 86.103062
iter 70 value 84.763073
iter 80 value 83.700748
iter 90 value 83.385954
iter 100 value 83.382835
final value 83.382835
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.897845
iter 10 value 94.488733
iter 20 value 94.427246
iter 30 value 88.252977
iter 40 value 86.361781
iter 50 value 86.273850
iter 60 value 86.093131
iter 70 value 83.118553
iter 80 value 82.560847
iter 90 value 82.541749
iter 100 value 81.695666
final value 81.695666
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.081958
iter 10 value 94.489087
iter 20 value 94.385311
final value 93.864586
converged
Fitting Repeat 4
# weights: 305
initial value 99.931999
iter 10 value 94.489210
iter 20 value 94.484343
final value 94.484292
converged
Fitting Repeat 5
# weights: 305
initial value 96.604778
iter 10 value 94.488998
iter 20 value 93.633366
iter 30 value 90.180586
iter 40 value 90.179708
iter 50 value 89.600561
iter 60 value 89.144967
final value 89.144808
converged
Fitting Repeat 1
# weights: 507
initial value 105.037473
iter 10 value 94.491890
iter 20 value 85.342292
final value 83.029068
converged
Fitting Repeat 2
# weights: 507
initial value 100.955137
iter 10 value 93.930272
iter 20 value 93.881520
iter 30 value 93.875261
iter 40 value 92.469319
iter 50 value 85.073405
iter 60 value 80.431389
iter 70 value 79.188948
iter 80 value 78.999070
iter 90 value 78.818183
iter 90 value 78.818183
final value 78.818183
converged
Fitting Repeat 3
# weights: 507
initial value 126.115636
iter 10 value 94.493116
iter 20 value 93.568429
iter 30 value 82.441190
iter 40 value 82.387152
iter 50 value 82.378912
iter 60 value 82.378506
iter 70 value 82.377243
iter 70 value 82.377243
iter 70 value 82.377242
final value 82.377242
converged
Fitting Repeat 4
# weights: 507
initial value 94.776497
iter 10 value 94.491774
iter 20 value 90.002366
iter 30 value 86.909264
iter 40 value 86.649511
iter 50 value 86.646736
iter 60 value 82.594178
iter 70 value 81.425838
iter 80 value 81.352195
iter 90 value 81.006141
iter 100 value 79.237826
final value 79.237826
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.920058
iter 10 value 94.271598
iter 20 value 94.262478
iter 30 value 94.043194
iter 40 value 90.395989
iter 50 value 86.646686
iter 60 value 86.643912
iter 70 value 86.642465
iter 80 value 85.586868
iter 90 value 84.618861
iter 100 value 82.448286
final value 82.448286
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.572560
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.166677
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.504974
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.625821
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.787288
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.835105
iter 10 value 94.498192
iter 20 value 94.484223
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.682917
iter 10 value 93.366429
final value 93.304242
converged
Fitting Repeat 3
# weights: 305
initial value 96.648330
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.224640
iter 10 value 92.867244
iter 20 value 90.487620
final value 90.487501
converged
Fitting Repeat 5
# weights: 305
initial value 97.686692
final value 94.354396
converged
Fitting Repeat 1
# weights: 507
initial value 129.144846
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.764599
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 96.526792
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 109.981547
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.565318
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 104.426276
iter 10 value 94.488566
iter 20 value 93.793495
iter 30 value 93.424790
iter 40 value 93.407459
iter 50 value 93.396526
iter 60 value 93.335584
iter 70 value 91.967817
iter 80 value 85.516367
iter 90 value 84.934638
iter 100 value 82.237376
final value 82.237376
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.665262
iter 10 value 94.450271
iter 20 value 86.770059
iter 30 value 85.965117
iter 40 value 85.872199
iter 50 value 85.721405
iter 60 value 85.089933
iter 70 value 84.888198
iter 80 value 84.882553
final value 84.882542
converged
Fitting Repeat 3
# weights: 103
initial value 98.102053
iter 10 value 94.285450
iter 20 value 90.602283
iter 30 value 88.266868
iter 40 value 87.888060
iter 50 value 87.655886
iter 60 value 83.247174
iter 70 value 82.449077
iter 80 value 81.508896
iter 90 value 81.272017
iter 100 value 81.172625
final value 81.172625
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 104.547500
iter 10 value 94.488862
iter 20 value 94.350288
iter 30 value 93.438970
iter 40 value 87.010291
iter 50 value 86.163533
iter 60 value 85.416778
iter 70 value 85.219143
final value 85.218192
converged
Fitting Repeat 5
# weights: 103
initial value 104.906720
iter 10 value 94.538556
iter 20 value 94.486142
iter 30 value 93.420796
iter 40 value 93.354393
iter 50 value 93.329851
iter 60 value 91.238468
iter 70 value 85.767513
iter 80 value 83.875780
iter 90 value 83.649975
iter 100 value 83.309137
final value 83.309137
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.999043
iter 10 value 94.134204
iter 20 value 86.044208
iter 30 value 85.706243
iter 40 value 84.171631
iter 50 value 83.385541
iter 60 value 82.260603
iter 70 value 81.597668
iter 80 value 81.242085
iter 90 value 81.083010
iter 100 value 80.959218
final value 80.959218
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.836924
iter 10 value 94.182551
iter 20 value 93.518498
iter 30 value 93.374245
iter 40 value 93.301510
iter 50 value 92.545473
iter 60 value 87.453661
iter 70 value 84.141964
iter 80 value 83.272201
iter 90 value 82.888931
iter 100 value 81.450576
final value 81.450576
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.068925
iter 10 value 94.691986
iter 20 value 94.020948
iter 30 value 86.788775
iter 40 value 84.183738
iter 50 value 83.053532
iter 60 value 80.760118
iter 70 value 80.502127
iter 80 value 80.411874
iter 90 value 80.286716
iter 100 value 80.220691
final value 80.220691
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.577363
iter 10 value 93.780771
iter 20 value 85.095000
iter 30 value 82.681279
iter 40 value 82.571365
iter 50 value 81.865726
iter 60 value 81.685250
iter 70 value 80.866882
iter 80 value 80.166925
iter 90 value 80.075669
iter 100 value 80.031931
final value 80.031931
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.444049
iter 10 value 94.502970
iter 20 value 93.566329
iter 30 value 83.987690
iter 40 value 82.736549
iter 50 value 82.069886
iter 60 value 80.661992
iter 70 value 80.316266
iter 80 value 80.166223
iter 90 value 80.146997
iter 100 value 80.142457
final value 80.142457
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.421947
iter 10 value 94.072859
iter 20 value 86.248288
iter 30 value 83.223292
iter 40 value 82.474968
iter 50 value 80.932354
iter 60 value 80.277266
iter 70 value 80.117534
iter 80 value 80.091573
iter 90 value 79.922179
iter 100 value 79.787082
final value 79.787082
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.879257
iter 10 value 92.552114
iter 20 value 86.125084
iter 30 value 85.722238
iter 40 value 83.636399
iter 50 value 81.921833
iter 60 value 80.901149
iter 70 value 80.313261
iter 80 value 80.190548
iter 90 value 80.005812
iter 100 value 79.676545
final value 79.676545
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.723169
iter 10 value 94.170064
iter 20 value 88.878827
iter 30 value 83.431761
iter 40 value 82.683264
iter 50 value 81.291819
iter 60 value 80.870741
iter 70 value 80.285478
iter 80 value 80.140323
iter 90 value 79.884998
iter 100 value 79.835531
final value 79.835531
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.556950
iter 10 value 91.895326
iter 20 value 89.760184
iter 30 value 88.140686
iter 40 value 85.903801
iter 50 value 83.916295
iter 60 value 83.172618
iter 70 value 81.574293
iter 80 value 81.095981
iter 90 value 80.867127
iter 100 value 80.618891
final value 80.618891
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.164966
iter 10 value 94.434448
iter 20 value 92.774701
iter 30 value 83.053140
iter 40 value 82.109648
iter 50 value 81.326231
iter 60 value 81.087841
iter 70 value 80.921518
iter 80 value 80.741417
iter 90 value 80.618817
iter 100 value 80.457507
final value 80.457507
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.866038
final value 94.485542
converged
Fitting Repeat 2
# weights: 103
initial value 106.793884
final value 94.485878
converged
Fitting Repeat 3
# weights: 103
initial value 97.964026
final value 94.485850
converged
Fitting Repeat 4
# weights: 103
initial value 98.985478
iter 10 value 94.526763
iter 20 value 94.520481
iter 30 value 94.497635
final value 94.484216
converged
Fitting Repeat 5
# weights: 103
initial value 106.812897
final value 94.485930
converged
Fitting Repeat 1
# weights: 305
initial value 100.437839
iter 10 value 91.443931
iter 20 value 86.089304
iter 30 value 86.081493
iter 40 value 85.838205
iter 50 value 82.848461
iter 60 value 80.468859
iter 70 value 80.228830
iter 80 value 80.189821
iter 90 value 79.820864
iter 100 value 79.036266
final value 79.036266
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.708564
iter 10 value 94.488747
iter 20 value 94.342391
iter 30 value 92.896256
iter 40 value 92.872661
iter 50 value 92.327590
iter 60 value 89.954987
iter 70 value 89.887127
iter 80 value 89.879073
iter 90 value 89.877673
iter 100 value 89.875770
final value 89.875770
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.401048
iter 10 value 94.488346
iter 20 value 94.484229
iter 30 value 94.005785
iter 40 value 90.145664
iter 50 value 83.314029
iter 60 value 83.254578
iter 70 value 81.796375
iter 80 value 80.941179
iter 90 value 80.875518
iter 100 value 80.845287
final value 80.845287
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.577645
iter 10 value 94.359475
iter 20 value 93.537505
iter 30 value 92.885668
iter 40 value 92.864734
iter 50 value 92.627847
iter 60 value 85.945663
iter 70 value 85.328780
iter 80 value 84.531691
iter 90 value 84.024995
iter 100 value 82.138982
final value 82.138982
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.341719
iter 10 value 94.489186
iter 20 value 94.484353
final value 94.484224
converged
Fitting Repeat 1
# weights: 507
initial value 115.067286
iter 10 value 94.494071
iter 20 value 94.467408
iter 30 value 87.665920
iter 40 value 87.384078
iter 50 value 87.380854
iter 60 value 86.944793
iter 70 value 83.356452
iter 80 value 81.540100
iter 90 value 81.172100
iter 100 value 80.394252
final value 80.394252
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.430261
iter 10 value 94.127293
iter 20 value 93.641895
iter 30 value 93.640249
iter 40 value 93.639663
iter 50 value 93.418188
iter 60 value 90.718449
iter 70 value 90.168450
iter 80 value 90.165637
iter 90 value 90.152445
iter 100 value 88.194045
final value 88.194045
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.920698
iter 10 value 94.061090
iter 20 value 94.055021
iter 30 value 94.054275
iter 40 value 94.053671
iter 50 value 93.369471
iter 60 value 93.305929
iter 70 value 93.301357
final value 93.297455
converged
Fitting Repeat 4
# weights: 507
initial value 114.032264
iter 10 value 94.361996
iter 20 value 93.634458
iter 30 value 82.605613
iter 40 value 82.410049
iter 50 value 82.408378
final value 82.408101
converged
Fitting Repeat 5
# weights: 507
initial value 102.140542
iter 10 value 91.806693
iter 20 value 88.252710
iter 30 value 88.249306
iter 40 value 86.755793
iter 50 value 86.700346
iter 60 value 85.641118
iter 70 value 85.384720
iter 80 value 84.375669
iter 90 value 84.136652
iter 100 value 83.990474
final value 83.990474
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.109548
final value 94.032967
converged
Fitting Repeat 2
# weights: 103
initial value 96.317777
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.844839
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.138434
final value 94.032967
converged
Fitting Repeat 5
# weights: 103
initial value 104.414544
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 128.933524
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 94.605628
iter 10 value 94.032976
final value 94.032967
converged
Fitting Repeat 3
# weights: 305
initial value 100.085340
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 96.778735
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 102.668541
iter 10 value 94.033405
final value 94.032967
converged
Fitting Repeat 1
# weights: 507
initial value 102.932171
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 98.498298
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 105.790585
iter 10 value 92.111119
iter 20 value 91.407909
iter 30 value 91.282399
iter 40 value 91.280006
final value 91.280001
converged
Fitting Repeat 4
# weights: 507
initial value 132.713209
iter 10 value 91.254120
iter 20 value 88.667619
final value 88.219780
converged
Fitting Repeat 5
# weights: 507
initial value 98.600472
final value 94.005042
converged
Fitting Repeat 1
# weights: 103
initial value 98.311526
iter 10 value 94.014064
iter 20 value 87.233448
iter 30 value 83.195030
iter 40 value 82.733996
iter 50 value 82.263148
iter 60 value 82.178561
iter 70 value 81.938848
iter 80 value 81.493614
iter 90 value 81.476313
final value 81.476303
converged
Fitting Repeat 2
# weights: 103
initial value 97.956397
iter 10 value 94.041961
iter 20 value 93.477988
iter 30 value 90.610198
iter 40 value 87.671510
iter 50 value 84.305565
iter 60 value 82.733895
iter 70 value 82.522379
iter 80 value 82.308063
iter 90 value 82.287106
iter 100 value 82.202129
final value 82.202129
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.801347
iter 10 value 93.333448
iter 20 value 85.511511
iter 30 value 84.241395
iter 40 value 83.640314
iter 50 value 83.207537
iter 60 value 83.034438
iter 70 value 82.993165
iter 80 value 82.376357
iter 90 value 81.795910
iter 100 value 81.684758
final value 81.684758
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.793646
iter 10 value 94.057830
iter 20 value 93.967050
iter 30 value 91.002223
iter 40 value 90.561182
iter 50 value 86.886269
iter 60 value 84.727013
iter 70 value 84.300146
iter 80 value 83.627105
iter 90 value 81.111531
iter 100 value 80.363488
final value 80.363488
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.328327
iter 10 value 93.722368
iter 20 value 86.118298
iter 30 value 83.924275
iter 40 value 83.422383
iter 50 value 82.975165
iter 60 value 82.521449
iter 70 value 82.147802
final value 82.142896
converged
Fitting Repeat 1
# weights: 305
initial value 100.274864
iter 10 value 85.201753
iter 20 value 83.669020
iter 30 value 82.527392
iter 40 value 82.242727
iter 50 value 81.971444
iter 60 value 81.750934
iter 70 value 81.507472
iter 80 value 80.636549
iter 90 value 80.190711
iter 100 value 79.462132
final value 79.462132
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.161901
iter 10 value 94.499847
iter 20 value 85.693256
iter 30 value 82.941200
iter 40 value 82.516618
iter 50 value 82.026335
iter 60 value 81.763557
iter 70 value 81.757783
iter 80 value 80.969401
iter 90 value 80.697984
iter 100 value 80.079060
final value 80.079060
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.119273
iter 10 value 94.020525
iter 20 value 92.979740
iter 30 value 92.357675
iter 40 value 86.323849
iter 50 value 85.192590
iter 60 value 83.847703
iter 70 value 80.399585
iter 80 value 80.045858
iter 90 value 79.276378
iter 100 value 78.656767
final value 78.656767
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.918772
iter 10 value 94.025766
iter 20 value 89.658524
iter 30 value 85.545509
iter 40 value 84.737550
iter 50 value 83.743479
iter 60 value 80.664349
iter 70 value 78.695077
iter 80 value 78.457115
iter 90 value 78.351831
iter 100 value 78.329337
final value 78.329337
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.076752
iter 10 value 94.005227
iter 20 value 88.319334
iter 30 value 84.221442
iter 40 value 83.411045
iter 50 value 83.201234
iter 60 value 81.428958
iter 70 value 80.931427
iter 80 value 80.872807
iter 90 value 80.807258
iter 100 value 80.771625
final value 80.771625
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.044082
iter 10 value 94.243902
iter 20 value 87.693539
iter 30 value 83.940332
iter 40 value 81.916437
iter 50 value 81.433957
iter 60 value 80.824595
iter 70 value 80.146769
iter 80 value 78.895314
iter 90 value 78.639217
iter 100 value 78.270496
final value 78.270496
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.363848
iter 10 value 94.092784
iter 20 value 85.116040
iter 30 value 83.836018
iter 40 value 82.641490
iter 50 value 82.407231
iter 60 value 80.614992
iter 70 value 79.283239
iter 80 value 78.447370
iter 90 value 78.025568
iter 100 value 77.912328
final value 77.912328
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.178884
iter 10 value 94.032716
iter 20 value 83.967322
iter 30 value 82.839494
iter 40 value 82.602938
iter 50 value 82.317539
iter 60 value 82.146365
iter 70 value 81.160546
iter 80 value 79.624566
iter 90 value 78.920114
iter 100 value 78.700863
final value 78.700863
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.574782
iter 10 value 92.680814
iter 20 value 84.897754
iter 30 value 83.413422
iter 40 value 81.510290
iter 50 value 81.367015
iter 60 value 80.957687
iter 70 value 80.088007
iter 80 value 79.124631
iter 90 value 78.690651
iter 100 value 78.566489
final value 78.566489
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.953520
iter 10 value 97.633814
iter 20 value 92.615701
iter 30 value 92.134791
iter 40 value 91.774241
iter 50 value 91.084491
iter 60 value 81.513016
iter 70 value 79.932329
iter 80 value 79.573664
iter 90 value 79.244607
iter 100 value 79.099553
final value 79.099553
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.781842
final value 94.055120
converged
Fitting Repeat 2
# weights: 103
initial value 96.728156
final value 94.054508
converged
Fitting Repeat 3
# weights: 103
initial value 95.334278
final value 94.054714
converged
Fitting Repeat 4
# weights: 103
initial value 106.184614
iter 10 value 94.054322
iter 20 value 94.052994
iter 30 value 92.548142
iter 40 value 90.641138
iter 50 value 90.413717
final value 90.410316
converged
Fitting Repeat 5
# weights: 103
initial value 95.266452
final value 94.054544
converged
Fitting Repeat 1
# weights: 305
initial value 102.378432
iter 10 value 94.030453
iter 20 value 93.515713
iter 30 value 92.807682
iter 40 value 92.791833
iter 50 value 92.537604
iter 60 value 92.533215
iter 70 value 92.532868
iter 80 value 92.532369
iter 90 value 92.531359
final value 92.531316
converged
Fitting Repeat 2
# weights: 305
initial value 94.745846
iter 10 value 93.148566
iter 20 value 93.119339
iter 30 value 93.097034
final value 93.097016
converged
Fitting Repeat 3
# weights: 305
initial value 106.919895
iter 10 value 94.054186
iter 20 value 94.031579
iter 30 value 93.259759
iter 40 value 93.100749
iter 50 value 93.100103
final value 93.100083
converged
Fitting Repeat 4
# weights: 305
initial value 105.592733
iter 10 value 94.055437
iter 20 value 94.048706
iter 30 value 94.024616
iter 40 value 84.811469
iter 50 value 82.588996
final value 82.588042
converged
Fitting Repeat 5
# weights: 305
initial value 97.086078
iter 10 value 94.026955
iter 20 value 89.823550
iter 30 value 86.550546
iter 40 value 86.537036
iter 50 value 86.536066
iter 60 value 83.670330
iter 70 value 81.628092
iter 80 value 81.553714
iter 90 value 81.202292
iter 100 value 81.088347
final value 81.088347
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.059873
iter 10 value 94.066432
iter 20 value 94.028963
iter 30 value 89.442320
iter 40 value 85.680474
iter 50 value 84.026199
iter 60 value 84.000986
iter 70 value 83.995562
iter 80 value 83.896457
final value 83.731512
converged
Fitting Repeat 2
# weights: 507
initial value 95.891527
iter 10 value 93.718934
iter 20 value 87.956264
iter 30 value 86.424914
final value 86.424118
converged
Fitting Repeat 3
# weights: 507
initial value 108.800103
iter 10 value 94.042352
iter 20 value 93.755757
iter 30 value 89.536022
iter 40 value 83.919927
iter 50 value 82.054900
iter 60 value 81.611717
iter 70 value 81.601782
iter 80 value 81.466199
iter 90 value 81.416863
final value 81.416839
converged
Fitting Repeat 4
# weights: 507
initial value 107.060749
iter 10 value 93.722535
iter 20 value 93.715061
iter 30 value 85.486086
iter 40 value 83.982203
iter 50 value 83.863562
iter 60 value 83.772114
final value 83.771809
converged
Fitting Repeat 5
# weights: 507
initial value 95.143581
iter 10 value 94.061662
iter 20 value 94.052947
iter 30 value 84.674476
iter 40 value 82.424882
iter 50 value 82.369973
iter 60 value 82.361979
iter 70 value 82.239578
iter 80 value 82.065727
iter 90 value 81.660239
iter 100 value 81.469377
final value 81.469377
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.063908
iter 10 value 84.316178
iter 20 value 84.080000
final value 84.079991
converged
Fitting Repeat 2
# weights: 103
initial value 95.308995
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.874081
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 100.302159
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.707518
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 100.999967
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 109.806646
iter 10 value 93.946240
final value 93.946237
converged
Fitting Repeat 3
# weights: 305
initial value 106.071209
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 99.646262
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 99.209896
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.425345
iter 10 value 93.367030
iter 20 value 92.211247
iter 30 value 92.159106
final value 92.158190
converged
Fitting Repeat 2
# weights: 507
initial value 129.594541
final value 94.032967
converged
Fitting Repeat 3
# weights: 507
initial value 103.909249
final value 92.892737
converged
Fitting Repeat 4
# weights: 507
initial value 114.396686
iter 10 value 86.726734
iter 20 value 82.928871
iter 30 value 82.080764
iter 40 value 81.891366
iter 50 value 81.890806
final value 81.890758
converged
Fitting Repeat 5
# weights: 507
initial value 105.013613
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 109.095284
iter 10 value 94.031025
iter 20 value 91.725314
iter 30 value 86.378880
iter 40 value 85.426851
iter 50 value 83.813881
iter 60 value 83.250780
iter 70 value 83.075840
iter 80 value 83.055389
iter 90 value 83.054998
final value 83.054947
converged
Fitting Repeat 2
# weights: 103
initial value 96.507948
iter 10 value 94.052168
iter 20 value 92.695952
iter 30 value 92.153969
iter 40 value 91.044053
iter 50 value 89.974056
iter 60 value 86.875819
iter 70 value 85.841128
iter 80 value 85.683089
iter 90 value 85.635796
iter 100 value 85.485873
final value 85.485873
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.502599
iter 10 value 94.021512
iter 20 value 92.015646
iter 30 value 89.645344
iter 40 value 84.013335
iter 50 value 83.579861
iter 60 value 83.416780
iter 70 value 83.389736
final value 83.385335
converged
Fitting Repeat 4
# weights: 103
initial value 111.711816
iter 10 value 94.056252
iter 20 value 94.055332
iter 30 value 92.048694
iter 40 value 88.521382
iter 50 value 88.347772
iter 60 value 87.407391
iter 70 value 85.984755
iter 80 value 83.771202
iter 90 value 83.209891
iter 100 value 82.848099
final value 82.848099
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.416893
iter 10 value 92.893750
iter 20 value 90.259619
iter 30 value 83.735526
iter 40 value 83.150123
iter 50 value 83.105340
final value 83.102271
converged
Fitting Repeat 1
# weights: 305
initial value 103.820244
iter 10 value 94.055475
iter 20 value 93.908813
iter 30 value 85.619753
iter 40 value 83.237924
iter 50 value 82.754529
iter 60 value 82.582414
iter 70 value 82.372232
iter 80 value 82.327491
iter 90 value 82.284420
iter 100 value 82.052275
final value 82.052275
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.021586
iter 10 value 95.737181
iter 20 value 84.695904
iter 30 value 83.794717
iter 40 value 83.359562
iter 50 value 83.134913
iter 60 value 83.045350
iter 70 value 82.942326
iter 80 value 82.829775
iter 90 value 82.392160
iter 100 value 80.393021
final value 80.393021
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.113468
iter 10 value 93.886409
iter 20 value 88.732449
iter 30 value 84.659406
iter 40 value 84.011166
iter 50 value 82.580690
iter 60 value 81.755431
iter 70 value 81.214203
iter 80 value 80.757925
iter 90 value 80.031899
iter 100 value 79.915241
final value 79.915241
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.888674
iter 10 value 93.598004
iter 20 value 87.821583
iter 30 value 85.210956
iter 40 value 84.994476
iter 50 value 84.280944
iter 60 value 83.977963
iter 70 value 82.722891
iter 80 value 81.539752
iter 90 value 80.758657
iter 100 value 80.205559
final value 80.205559
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.508789
iter 10 value 94.162188
iter 20 value 94.028830
iter 30 value 85.621737
iter 40 value 83.379096
iter 50 value 83.149097
iter 60 value 83.080081
iter 70 value 83.001063
iter 80 value 82.653924
iter 90 value 81.631219
iter 100 value 80.725002
final value 80.725002
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.494382
iter 10 value 94.152816
iter 20 value 89.884558
iter 30 value 86.280078
iter 40 value 83.926903
iter 50 value 83.335857
iter 60 value 83.147316
iter 70 value 82.997936
iter 80 value 82.102519
iter 90 value 81.179870
iter 100 value 80.080901
final value 80.080901
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.946390
iter 10 value 94.008381
iter 20 value 92.885032
iter 30 value 86.994323
iter 40 value 86.246491
iter 50 value 84.561408
iter 60 value 83.209932
iter 70 value 82.879358
iter 80 value 81.768265
iter 90 value 80.244897
iter 100 value 80.126322
final value 80.126322
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.391446
iter 10 value 94.192547
iter 20 value 93.890630
iter 30 value 86.639791
iter 40 value 85.560260
iter 50 value 83.391177
iter 60 value 83.083480
iter 70 value 82.975949
iter 80 value 82.420074
iter 90 value 81.422745
iter 100 value 80.869407
final value 80.869407
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.273130
iter 10 value 94.216760
iter 20 value 89.251339
iter 30 value 86.062104
iter 40 value 84.763369
iter 50 value 83.811121
iter 60 value 82.963852
iter 70 value 81.187749
iter 80 value 80.774008
iter 90 value 80.681432
iter 100 value 80.395149
final value 80.395149
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.818523
iter 10 value 94.248305
iter 20 value 84.941489
iter 30 value 83.475180
iter 40 value 82.485784
iter 50 value 81.934665
iter 60 value 81.795402
iter 70 value 81.715023
iter 80 value 81.359373
iter 90 value 80.792224
iter 100 value 80.657034
final value 80.657034
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.612148
iter 10 value 93.658097
final value 93.636160
converged
Fitting Repeat 2
# weights: 103
initial value 95.949209
final value 94.054510
converged
Fitting Repeat 3
# weights: 103
initial value 100.134469
iter 10 value 94.054544
iter 20 value 94.052922
iter 30 value 88.986438
final value 88.916412
converged
Fitting Repeat 4
# weights: 103
initial value 95.156043
iter 10 value 93.731742
iter 20 value 93.493027
iter 30 value 93.416224
iter 40 value 93.411584
final value 93.411492
converged
Fitting Repeat 5
# weights: 103
initial value 96.191270
final value 94.054539
converged
Fitting Repeat 1
# weights: 305
initial value 108.871578
iter 10 value 94.054985
iter 20 value 94.042342
iter 30 value 92.961316
iter 40 value 85.460306
iter 50 value 84.454249
iter 60 value 84.347190
iter 70 value 83.856782
iter 80 value 83.605885
iter 90 value 83.602880
final value 83.602782
converged
Fitting Repeat 2
# weights: 305
initial value 95.199131
iter 10 value 94.037785
iter 20 value 93.997357
final value 93.947001
converged
Fitting Repeat 3
# weights: 305
initial value 92.431164
iter 10 value 91.913755
iter 20 value 91.739880
iter 30 value 91.735897
iter 40 value 91.731940
final value 91.730998
converged
Fitting Repeat 4
# weights: 305
initial value 128.920254
iter 10 value 93.993918
iter 20 value 90.452197
iter 30 value 88.626899
iter 40 value 87.507066
iter 50 value 85.467430
final value 85.466825
converged
Fitting Repeat 5
# weights: 305
initial value 99.213985
iter 10 value 94.037799
iter 20 value 93.949873
iter 30 value 93.947208
iter 40 value 84.143411
iter 50 value 83.914914
final value 83.912886
converged
Fitting Repeat 1
# weights: 507
initial value 100.625078
iter 10 value 94.058604
iter 20 value 93.953954
iter 30 value 93.947253
iter 40 value 88.489458
iter 50 value 85.353777
iter 60 value 85.331528
iter 70 value 85.324500
iter 80 value 85.324137
iter 90 value 85.318415
iter 100 value 85.315270
final value 85.315270
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.558525
iter 10 value 94.061094
iter 20 value 94.053216
final value 94.052900
converged
Fitting Repeat 3
# weights: 507
initial value 99.734934
iter 10 value 94.057739
iter 20 value 94.050034
iter 30 value 84.325013
iter 40 value 83.967947
iter 50 value 83.965235
iter 60 value 83.945861
iter 70 value 83.913092
final value 83.913091
converged
Fitting Repeat 4
# weights: 507
initial value 102.977265
iter 10 value 94.059765
iter 20 value 93.818111
iter 30 value 91.584505
iter 40 value 91.580479
iter 50 value 91.029654
iter 60 value 90.756935
iter 70 value 85.488722
iter 80 value 85.340402
iter 90 value 85.330005
iter 100 value 84.984036
final value 84.984036
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 98.090716
iter 10 value 93.954526
iter 20 value 93.948498
iter 30 value 93.943328
iter 40 value 84.110807
iter 50 value 84.009349
iter 60 value 83.367077
iter 70 value 81.981157
iter 80 value 81.831236
iter 90 value 81.223010
iter 100 value 80.266222
final value 80.266222
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.643690
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.553420
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.183098
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 97.801381
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.511947
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.364044
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.517342
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.735208
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.034717
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.620399
iter 10 value 91.905120
iter 20 value 91.030618
final value 88.555221
converged
Fitting Repeat 1
# weights: 507
initial value 108.836905
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 117.029479
iter 10 value 94.442073
iter 10 value 94.442072
iter 10 value 94.442072
final value 94.442072
converged
Fitting Repeat 3
# weights: 507
initial value 144.366004
iter 10 value 94.243664
iter 20 value 94.144345
iter 30 value 94.143760
final value 94.143685
converged
Fitting Repeat 4
# weights: 507
initial value 110.416891
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 98.479772
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 109.623222
iter 10 value 94.496740
iter 20 value 91.694311
iter 30 value 87.156816
iter 40 value 84.578245
iter 50 value 84.089175
iter 60 value 83.764121
iter 70 value 83.529595
iter 80 value 83.448458
iter 90 value 83.386154
final value 83.383561
converged
Fitting Repeat 2
# weights: 103
initial value 96.505779
iter 10 value 94.456262
iter 20 value 89.459803
iter 30 value 88.279831
iter 40 value 87.656044
iter 50 value 87.588702
iter 60 value 86.234342
iter 70 value 86.038291
iter 80 value 85.972995
final value 85.972152
converged
Fitting Repeat 3
# weights: 103
initial value 104.557797
iter 10 value 94.542022
iter 20 value 94.482656
iter 30 value 87.225404
iter 40 value 86.546773
iter 50 value 86.383847
iter 60 value 85.911143
iter 70 value 85.457562
iter 80 value 85.358293
final value 85.357404
converged
Fitting Repeat 4
# weights: 103
initial value 101.140734
iter 10 value 94.480614
iter 20 value 88.250312
iter 30 value 87.448321
iter 40 value 86.127222
iter 50 value 85.999465
iter 60 value 85.930391
iter 70 value 85.603231
final value 85.552770
converged
Fitting Repeat 5
# weights: 103
initial value 112.042645
iter 10 value 94.487582
iter 20 value 94.424955
iter 30 value 92.649818
iter 40 value 89.377704
iter 50 value 88.298018
iter 60 value 87.757333
iter 70 value 86.964611
iter 80 value 86.476833
iter 90 value 86.019769
iter 100 value 85.972411
final value 85.972411
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.803839
iter 10 value 96.892121
iter 20 value 94.217973
iter 30 value 88.587708
iter 40 value 85.078882
iter 50 value 84.420657
iter 60 value 83.772294
iter 70 value 83.494784
iter 80 value 83.406335
iter 90 value 83.202343
iter 100 value 82.763374
final value 82.763374
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.500240
iter 10 value 94.580053
iter 20 value 93.224644
iter 30 value 87.810755
iter 40 value 85.810800
iter 50 value 84.135027
iter 60 value 82.649468
iter 70 value 82.521102
iter 80 value 82.444735
iter 90 value 82.189775
iter 100 value 82.049393
final value 82.049393
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.137528
iter 10 value 93.732126
iter 20 value 90.076495
iter 30 value 87.055542
iter 40 value 86.714210
iter 50 value 86.437916
iter 60 value 86.287338
iter 70 value 86.058509
iter 80 value 85.465353
iter 90 value 85.272188
iter 100 value 84.521101
final value 84.521101
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.687684
iter 10 value 94.413307
iter 20 value 91.491495
iter 30 value 87.117828
iter 40 value 86.600394
iter 50 value 83.653113
iter 60 value 83.054937
iter 70 value 82.803326
iter 80 value 82.447779
iter 90 value 82.288060
iter 100 value 82.149981
final value 82.149981
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.709932
iter 10 value 94.663113
iter 20 value 94.500626
iter 30 value 92.620253
iter 40 value 87.074841
iter 50 value 84.967622
iter 60 value 84.121364
iter 70 value 83.454104
iter 80 value 82.924950
iter 90 value 82.878772
iter 100 value 82.803036
final value 82.803036
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.247410
iter 10 value 94.699304
iter 20 value 89.688553
iter 30 value 87.055611
iter 40 value 86.519490
iter 50 value 85.932514
iter 60 value 84.747321
iter 70 value 83.618268
iter 80 value 83.554182
iter 90 value 83.419641
iter 100 value 83.363715
final value 83.363715
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.570321
iter 10 value 94.889015
iter 20 value 88.698240
iter 30 value 87.240019
iter 40 value 86.990283
iter 50 value 85.295991
iter 60 value 84.090625
iter 70 value 83.111149
iter 80 value 82.945851
iter 90 value 82.633694
iter 100 value 82.425993
final value 82.425993
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.074920
iter 10 value 94.681775
iter 20 value 94.306800
iter 30 value 93.987314
iter 40 value 87.307179
iter 50 value 86.699569
iter 60 value 84.477472
iter 70 value 82.851857
iter 80 value 82.530711
iter 90 value 82.070233
iter 100 value 81.804474
final value 81.804474
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.884721
iter 10 value 94.517183
iter 20 value 93.232790
iter 30 value 91.758862
iter 40 value 88.648202
iter 50 value 87.062869
iter 60 value 84.824832
iter 70 value 84.039363
iter 80 value 83.054741
iter 90 value 82.206016
iter 100 value 81.996135
final value 81.996135
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.842312
iter 10 value 94.918264
iter 20 value 94.406943
iter 30 value 94.064426
iter 40 value 91.426887
iter 50 value 88.701755
iter 60 value 86.963611
iter 70 value 86.147751
iter 80 value 85.286684
iter 90 value 83.968295
iter 100 value 82.767958
final value 82.767958
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.417515
final value 94.485850
converged
Fitting Repeat 2
# weights: 103
initial value 95.506187
final value 94.485729
converged
Fitting Repeat 3
# weights: 103
initial value 97.025227
final value 94.485787
converged
Fitting Repeat 4
# weights: 103
initial value 100.375459
final value 94.486071
converged
Fitting Repeat 5
# weights: 103
initial value 95.326035
final value 94.485589
converged
Fitting Repeat 1
# weights: 305
initial value 97.309566
iter 10 value 94.488782
iter 20 value 94.472041
iter 30 value 94.147681
iter 40 value 94.145934
iter 50 value 94.134117
iter 50 value 94.134116
iter 50 value 94.134116
final value 94.134116
converged
Fitting Repeat 2
# weights: 305
initial value 107.101544
iter 10 value 94.488406
iter 20 value 94.424505
iter 30 value 90.708190
iter 40 value 88.609596
iter 50 value 87.174552
iter 60 value 87.173964
final value 87.173951
converged
Fitting Repeat 3
# weights: 305
initial value 95.597537
iter 10 value 94.488417
iter 20 value 94.237481
iter 30 value 87.706922
iter 40 value 87.680707
iter 50 value 84.333567
iter 60 value 82.563072
iter 70 value 82.541355
iter 80 value 82.465689
iter 90 value 82.293519
iter 100 value 82.163324
final value 82.163324
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.977369
iter 10 value 94.359283
iter 20 value 94.357054
iter 30 value 94.356861
iter 40 value 94.354552
iter 50 value 94.287396
iter 60 value 93.305118
iter 70 value 91.591825
iter 80 value 85.107511
final value 85.080668
converged
Fitting Repeat 5
# weights: 305
initial value 98.363960
iter 10 value 93.736473
iter 20 value 93.671471
iter 30 value 93.670844
final value 93.669965
converged
Fitting Repeat 1
# weights: 507
initial value 97.753355
iter 10 value 94.492655
iter 20 value 94.484649
iter 30 value 94.368545
iter 40 value 93.801030
iter 50 value 88.855413
iter 60 value 88.575972
iter 70 value 86.466979
iter 80 value 82.319477
iter 90 value 81.535117
iter 100 value 81.348599
final value 81.348599
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.264438
iter 10 value 94.492868
iter 20 value 94.478106
iter 30 value 94.145293
final value 94.144544
converged
Fitting Repeat 3
# weights: 507
initial value 108.166739
iter 10 value 93.739986
iter 20 value 93.732783
iter 30 value 93.030524
iter 40 value 92.567118
iter 50 value 90.619647
iter 60 value 90.524889
iter 70 value 90.522204
iter 80 value 90.507192
iter 90 value 90.444577
iter 100 value 90.392443
final value 90.392443
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.900573
iter 10 value 94.491404
iter 20 value 89.067992
iter 30 value 86.517715
final value 86.517514
converged
Fitting Repeat 5
# weights: 507
initial value 108.000733
iter 10 value 94.492341
iter 20 value 94.469356
iter 30 value 90.254997
iter 40 value 87.897595
iter 50 value 87.863973
iter 60 value 87.718656
iter 70 value 87.709524
final value 87.709002
converged
Fitting Repeat 1
# weights: 305
initial value 125.747487
iter 10 value 117.895149
iter 20 value 117.784223
final value 111.877295
converged
Fitting Repeat 2
# weights: 305
initial value 127.276004
iter 10 value 117.895075
iter 20 value 117.816322
iter 30 value 116.756522
iter 40 value 108.383250
iter 50 value 108.302973
iter 60 value 108.271582
iter 70 value 108.244276
iter 80 value 108.232295
iter 90 value 107.099455
iter 100 value 106.122167
final value 106.122167
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 142.993325
iter 10 value 116.220683
iter 20 value 116.145825
iter 30 value 115.469924
iter 40 value 115.242847
iter 50 value 115.242687
iter 60 value 115.242418
iter 70 value 114.647314
final value 114.642957
converged
Fitting Repeat 4
# weights: 305
initial value 140.834171
iter 10 value 117.892730
iter 20 value 117.607098
iter 30 value 117.513894
iter 40 value 117.511356
iter 50 value 113.021549
iter 60 value 110.437494
iter 70 value 110.436449
final value 110.435695
converged
Fitting Repeat 5
# weights: 305
initial value 129.500780
iter 10 value 117.743879
iter 20 value 115.079528
iter 30 value 115.040285
iter 40 value 114.946332
iter 50 value 114.943951
iter 60 value 114.432152
iter 70 value 113.721414
final value 113.719875
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu May 21 01:10:22 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.775 1.291 103.642
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.959 | 0.548 | 34.608 | |
| FreqInteractors | 0.412 | 0.036 | 0.448 | |
| calculateAAC | 0.032 | 0.001 | 0.033 | |
| calculateAutocor | 0.264 | 0.015 | 0.279 | |
| calculateCTDC | 0.073 | 0.000 | 0.074 | |
| calculateCTDD | 0.468 | 0.001 | 0.469 | |
| calculateCTDT | 0.126 | 0.001 | 0.127 | |
| calculateCTriad | 0.397 | 0.005 | 0.402 | |
| calculateDC | 0.081 | 0.008 | 0.090 | |
| calculateF | 0.297 | 0.000 | 0.297 | |
| calculateKSAAP | 0.088 | 0.009 | 0.097 | |
| calculateQD_Sm | 1.820 | 0.027 | 1.847 | |
| calculateTC | 1.491 | 0.157 | 1.647 | |
| calculateTC_Sm | 0.286 | 0.023 | 0.309 | |
| corr_plot | 33.983 | 0.474 | 34.521 | |
| enrichfindP | 0.544 | 0.043 | 11.299 | |
| enrichfind_hp | 0.068 | 0.004 | 1.128 | |
| enrichplot | 0.492 | 0.003 | 0.497 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.397 | 0.005 | 4.229 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.002 | 0.001 | 0.002 | |
| plotPPI | 0.081 | 0.000 | 0.082 | |
| pred_ensembel | 12.739 | 0.151 | 11.563 | |
| var_imp | 33.079 | 0.496 | 33.583 | |