Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2024-12-23 11:43 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4754 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4472 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4426 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4381 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4372 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 893/2274 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
graper 1.23.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: graper |
Version: 1.23.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper |
StartedAt: 2024-12-22 15:14:06 -0500 (Sun, 22 Dec 2024) |
EndedAt: 2024-12-22 15:14:25 -0500 (Sun, 22 Dec 2024) |
EllapsedTime: 18.4 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘graper’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -DR_NO_REMAP -c fit_graper.cpp -o fit_graper.o In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:16: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:28:6: warning: "Boost.Math requires C++14" [-W#warnings] # warning "Boost.Math requires C++14" ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:176:12: error: no member named 'is_null_pointer' in namespace 'std'; did you mean 'is_pointer'? using std::is_null_pointer; ~~~~~^~~~~~~~~~~~~~~ is_pointer /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:924:50: note: 'is_pointer' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS is_pointer ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:208:12: error: no member named 'is_final' in namespace 'std' using std::is_final; ~~~~~^ /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:259:12: error: no member named 'remove_cv_t' in namespace 'std'; did you mean 'remove_cv'? using std::remove_cv_t; ~~~~~^~~~~~~~~~~ remove_cv /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:776:50: note: 'remove_cv' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_cv ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:261:12: error: no member named 'remove_const_t' in namespace 'std'; did you mean 'remove_const'? using std::remove_const_t; ~~~~~^~~~~~~~~~~~~~ remove_const /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:734:50: note: 'remove_const' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_const {typedef _Tp type;}; ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:263:12: error: no member named 'remove_volatile_t' in namespace 'std'; did you mean 'remove_volatile'? using std::remove_volatile_t; ~~~~~^~~~~~~~~~~~~~~~~ remove_volatile /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:755:50: note: 'remove_volatile' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_volatile {typedef _Tp type;}; ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:265:12: error: no member named 'add_cv_t' in namespace 'std'; did you mean 'add_cv'? using std::add_cv_t; ~~~~~^~~~~~~~ add_cv /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1347:50: note: 'add_cv' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_cv { ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:267:12: error: no member named 'add_const_t' in namespace 'std'; did you mean 'add_const'? using std::add_const_t; ~~~~~^~~~~~~~~~~ add_const /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1328:50: note: 'add_const' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_const { ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:269:12: error: no member named 'add_volatile_t' in namespace 'std'; did you mean 'add_volatile'? using std::add_volatile_t; ~~~~~^~~~~~~~~~~~~~ add_volatile /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1338:50: note: 'add_volatile' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_volatile { ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:273:12: error: no member named 'remove_reference_t' in namespace 'std'; did you mean 'remove_reference'? using std::remove_reference_t; ~~~~~^~~~~~~~~~~~~~~~~~ remove_reference /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1364:50: note: 'remove_reference' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_reference {typedef _LIBCPP_NODEBUG_TYPE _Tp type;}; ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:275:12: error: no member named 'add_lvalue_reference_t' in namespace 'std'; did you mean 'add_lvalue_reference'? using std::add_lvalue_reference_t; ~~~~~^~~~~~~~~~~~~~~~~~~~~~ add_lvalue_reference /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1379:50: note: 'add_lvalue_reference' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_lvalue_reference ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:277:12: error: no member named 'add_rvalue_reference_t' in namespace 'std'; did you mean 'add_rvalue_reference'? using std::add_rvalue_reference_t; ~~~~~^~~~~~~~~~~~~~~~~~~~~~ add_rvalue_reference /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1389:50: note: 'add_rvalue_reference' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_rvalue_reference ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:281:12: error: no member named 'remove_pointer_t' in namespace 'std'; did you mean 'remove_pointer'? using std::remove_pointer_t; ~~~~~^~~~~~~~~~~~~~~~ remove_pointer /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1446:50: note: 'remove_pointer' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_pointer {typedef _LIBCPP_NODEBUG_TYPE _Tp type;}; ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:283:12: error: no member named 'add_pointer_t' in namespace 'std'; did you mean 'add_pointer'? using std::add_pointer_t; ~~~~~^~~~~~~~~~~~~ add_pointer /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1466:50: note: 'add_pointer' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS add_pointer ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:287:12: error: no member named 'make_signed_t' in namespace 'std'; did you mean 'make_signed'? using std::make_signed_t; ~~~~~^~~~~~~~~~~~~ make_signed /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:2309:29: note: 'make_signed' declared here struct _LIBCPP_TEMPLATE_VIS make_signed ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:289:12: error: no member named 'make_unsigned_t' in namespace 'std'; did you mean 'make_unsigned'? using std::make_unsigned_t; ~~~~~^~~~~~~~~~~~~~~ make_unsigned /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:2342:29: note: 'make_unsigned' declared here struct _LIBCPP_TEMPLATE_VIS make_unsigned ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:293:12: error: no member named 'remove_extent_t' in namespace 'std'; did you mean 'remove_extent'? using std::remove_extent_t; ~~~~~^~~~~~~~~~~~~~~ remove_extent /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1601:50: note: 'remove_extent' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_extent ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:295:12: error: no member named 'remove_all_extents_t' in namespace 'std'; did you mean 'remove_all_extents'? using std::remove_all_extents_t; ~~~~~^~~~~~~~~~~~~~~~~~~~ remove_all_extents /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1614:50: note: 'remove_all_extents' declared here template <class _Tp> struct _LIBCPP_TEMPLATE_VIS remove_all_extents ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:299:12: error: no member named 'decay_t' in namespace 'std'; did you mean 'decay'? using std::decay_t; ~~~~~^~~~~~~ decay /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:1669:29: note: 'decay' declared here struct _LIBCPP_TEMPLATE_VIS decay ^ In file included from fit_graper.cpp:4: In file included from ./graper_linear_dense_ff.h:2: In file included from /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:17: /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/BH/include/boost/math/tools/type_traits.hpp:301:12: error: no member named 'enable_if_t' in namespace 'std'; did you mean 'enable_if'? using std::enable_if_t; ~~~~~^~~~~~~~~~~ enable_if /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/type_traits:538:63: note: 'enable_if' declared here template <bool, class _Tp = void> struct _LIBCPP_TEMPLATE_VIS enable_if {}; ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 1 warning and 20 errors generated. make: *** [fit_graper.o] Error 1 ERROR: compilation failed for package ‘graper’ * removing ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/graper’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/graper’